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1.
Nature ; 582(7813): 539-544, 2020 06.
Article in English | MEDLINE | ID: mdl-32555461

ABSTRACT

Coordinated skills such as speech or dance involve sequences of actions that follow syntactic rules in which transitions between elements depend on the identities and order of past actions. Canary songs consist of repeated syllables called phrases, and the ordering of these phrases follows long-range rules1 in which the choice of what to sing depends on the song structure many seconds prior. The neural substrates that support these long-range correlations are unknown. Here, using miniature head-mounted microscopes and cell-type-specific genetic tools, we observed neural activity in the premotor nucleus HVC2-4 as canaries explored various phrase sequences in their repertoire. We identified neurons that encode past transitions, extending over four phrases and spanning up to four seconds and forty syllables. These neurons preferentially encode past actions rather than future actions, can reflect more than one song history, and are active mostly during the rare phrases that involve history-dependent transitions in song. These findings demonstrate that the dynamics of HVC include 'hidden states' that are not reflected in ongoing behaviour but rather carry information about prior actions. These states provide a possible substrate for the control of syntax transitions governed by long-range rules.


Subject(s)
Canaries/physiology , Neurons/physiology , Singing/physiology , Vocalization, Animal/physiology , Animals , Brain/anatomy & histology , Brain/cytology , Brain/physiology , Canaries/anatomy & histology , Canaries/genetics , Male , Models, Neurological , Psycholinguistics , Time Factors
2.
Bull Entomol Res ; 112(5): 604-612, 2022 Oct.
Article in English | MEDLINE | ID: mdl-35199633

ABSTRACT

The highest natural mortality rate of larval Lepidoptera in field populations occurs in the first instar, but it is highly variable. The pattern and degree of survival is not easily predicted but depends on their ability to establish on host plants. Lepidopteran larval dispersal behaviour, known as 'drop-off', happens when the host is unsuitable for larvae to settle and begin feeding. Understanding drop-off behaviour of Helicoverpa armigera (Hübner) with and without physiological resistance to Bt toxins on Bt and non-Bt cotton plants is an important component for resistance management strategies for this insect. We examined the drop-off behaviour of H. armigera to determine: (1) whether they move the same way or differently in response to Bt and non-Bt, and (2) could H. armigera larvae detect Bt toxin levels in cotton plants or did they move independently of toxin levels? In this study, we assessed the drop-off behaviour of Bt-resistant and Bt-susceptible H. armigera neonates on artificial diets and cotton plants with and without Bt toxin during the first 12 h after hatching. Bt-resistant and Bt-susceptible H. armigera neonates behaved differently on Bt and non-Bt substrates. The percentages of Bt-resistant larvae that dropped off Bt and non-Bt cotton plants were not significantly different. In contrast, significantly more Bt-susceptible larvae dropped off Bt cotton than non-Bt cotton plants over time. Although Bt-susceptible larvae could not detect Bt toxin, they showed preference on non-Bt toxin substrates and were more likely to drop off substrates with Bt toxin.


Subject(s)
Hemolysin Proteins , Moths , Animals , Larva/physiology , Hemolysin Proteins/pharmacology , Hemolysin Proteins/genetics , Endotoxins/pharmacology , Gossypium , Bacterial Proteins/pharmacology , Bacterial Proteins/genetics , Bacillus thuringiensis Toxins , Moths/physiology , Plants, Genetically Modified , Insecticide Resistance
3.
J Dairy Sci ; 103(7): 6114-6134, 2020 Jul.
Article in English | MEDLINE | ID: mdl-32418699

ABSTRACT

Our objectives were to evaluate technical lignins for their antifungal properties against 3 molds and 1 yeast causing hay spoilage, and their ability to preserve ground high-moisture alfalfa hay nutritive value in vitro. In experiment 1, 8 technical lignins and propionic acid (PRP; positive control) were tested at a dose of 40 mg/mL. The experiment had a randomized complete block design (RCBD, 4 runs) and a factorial arrangement of 3 molds × 10 additives (ADV). The effects of the ADV on yeast were evaluated separately with a RCBD. Sodium lignosulfonate (NaL) and PRP were the only treatments with 100 ± 2.8% inhibition of fungi. In experiment 2, the minimum inhibitory concentration (MIC) for selected lignins and PRP were determined. At pH 4, NaL had the lowest MIC across the molds (20-33.3 mg/mL) and magnesium lignosulfonate (MgL) for the yeast (26.7) among the lignins. However, PRP had MIC values that were several-fold lower across all fungi (1.25-3.33). In experiment 3, a RCBD (5 blocks) with a 3 (ADV; NaL, MgL, and PRP) × 4 (doses: 0, 0.5, 1, and 3% wt/wt fresh basis) factorial arrangement of treatments was used to evaluate the preservative effects of ADV in ground high-moisture alfalfa hay inoculated with a mixture of the fungi previously tested and incubated under aerobic conditions in vitro. After 15 d, relative to untreated hay (14.9), dry matter (DM) losses were lessened by doses as low as 1% for NaL (3.39) and 0.5% for PRP (0.81 ± 0.77%). The mold count was reduced in both NaL at 3% (3.92) and PRP as low as 0.5% (3.94) relative to untreated hay (7.76 ± 0.55 log cfu/fresh g). Consequently, sugars were best preserved by NaL at 3% (10.1) and PRP as low as 0.5% (10.5) versus untreated (7.99 ± 0.283% DM), while keeping neutral detergent fiber values lower in NaL (45.9) and PRP-treated (45.1) hays at the same doses, respectively, relative to untreated (49.7 ± 0.66% DM). Hay DM digestibility was increased by doses as low as 3% for NaL (67.5), 1% MgL (67.0), and 0.5% PRP (68.5) versus untreated hay (61.8 ± 0.77%). The lowest doses increasing neutral detergent fiber digestibility relative to untreated hay (23.3) were 0.5% for MgL and PRP (30.5 and 30.1, respectively) and 1% for NaL (30.7 ± 1.09% DM). Across technical lignins, NaL showed the most promise as a potential hay preservative. However, its effects were limited compared with PRP at equivalent doses. Despite not having an effect on preservation, MgL improved DM digestibility by stimulating neutral detergent fiber digestibility. This study warrants further development of NaL under field conditions.


Subject(s)
Animal Feed/microbiology , Food Preservatives/chemistry , Fungi/drug effects , Lignin/analogs & derivatives , Lignin/chemistry , Medicago sativa , Animals , Food Microbiology , Food Preservation
4.
J Chem Ecol ; 43(6): 608-616, 2017 Jun.
Article in English | MEDLINE | ID: mdl-28585091

ABSTRACT

Plants of the Brassicaceae are defended from feeding by generalist insects by constitutively-expressed and herbivory-induced glucosinolates (GS). We induced Arabidopsis plants 1, 16 and 24 h prior to allowing neonate larvae of the generalist Helicoverpa armigera to feed on whole plants for 72 h. These plants were subsequently retested with another group of neonates for a further 72 h. We used wild-type A. thaliana Col-0, and mutant lines lacking indolic GS, aliphatic GS or all GS. We hypothesized that larvae would not grow well on defended plants (WT) compared to those lacking GS, and would not grow well if plants had been primed or fed on for longer, due to the expected induced GS. There was survivorship on all lines suggesting H. armigera is a suitable generalist for these experiments. Larvae performed less well on wild-type and no indolic lines than on no aliphatic and no GS lines. Larvae distributed feeding damage extensively in all lines, more so on wild type and no-indolic lines. Contrary to expectations, larvae grew better on plants that had been induced for 1 to 16 h than on un-induced plants suggesting they moved to and selected less toxic plant parts within a heterogeneously defended plant. Performance declined on all lines if plants had been induced for 24 h, or had been fed upon for a further 72 h. However, contrary to expectation, individual and total GS did not increase after these two treatments. This suggests that Arabidopsis plants induce additional (not GS) defenses after longer induction periods.


Subject(s)
Arabidopsis/chemistry , Glucosinolates/chemistry , Herbivory , Moths/physiology , Animals , Arabidopsis/metabolism , Chromatography, High Pressure Liquid , Feeding Behavior , Glucosinolates/metabolism , Larva/chemistry , Larva/metabolism , Plant Leaves/chemistry , Plant Leaves/metabolism
5.
Med Vet Entomol ; 30(2): 241-5, 2016 06.
Article in English | MEDLINE | ID: mdl-26669823

ABSTRACT

The bag-shelter moth, Ochrogaster lunifer Herrich-Schaffer (Lepidoptera: Notodontidae), is associated with a condition called equine amnionitis and fetal loss (EAFL) on horse farms in Australia. Setal fragments from O. lunifer larvae have been identified in the placentas of experimentally aborted fetuses and their dams, and in clinical abortions. The gregarious larvae build silken nests in which large numbers cohabit over spring, summer and autumn. The final instars disperse to pupation sites in the ground where they overwinter. Field-collected O. lunifer larvae, their nests and nearby soil were examined using light and electron microscopy to identify setae likely to cause EAFL and to determine where and how many were present. Microtrichia, barbed hairs and true setae were found on the exoskeletons of the larvae. True setae matching the majority of setal fragments described from equine tissue were found on third to eighth instar larvae or exuviae. The number of true setae increased with the age of the larva; eighth instars carried around 2.0-2.5 million true setae. The exuvia of the pre-pupal instar was incorporated into the pupal chamber. The major sources of setae are likely to be nests, dispersing pre-pupal larvae and their exuviae, and pupal chambers.


Subject(s)
Chorioamnionitis/veterinary , Horse Diseases/etiology , Moths/anatomy & histology , Moths/physiology , Animals , Chorioamnionitis/etiology , Female , Horses , Larva/anatomy & histology , Larva/growth & development , Larva/physiology , Moths/growth & development , New South Wales , Pregnancy , Pupa/anatomy & histology , Pupa/growth & development , Pupa/physiology , Queensland , Sensilla/physiology , Victoria
6.
Bull Entomol Res ; 106(6): 710-717, 2016 Dec.
Article in English | MEDLINE | ID: mdl-27378652

ABSTRACT

In Australia Bt cotton has been planted since 1996, and has greatly improved the control of its key target Helicoverpa armigera (Hübner). There is no strong evidence that genetically modified cotton has been selected for significant physiological resistance to Bt toxin in field populations. There are many possible explanations for the lack of apparent selection that range from high compliance with the resistance management strategy for this technology to a lack of behavioral preference in key traits such as oviposition that could favor survival. To date most experiments that test oviposition of H. armigera on Bt cotton vs. conventional cotton have been done with susceptible moths. We determine the oviposition preference of a field isolated Bt resistant line of H. armigera and a susceptible counterpart when given a choice of non-Bt cotton and Bt-cotton with the same genetic background, and test whether there is any relationship between oviposition site selection (different plant structures) and the survival of the first instar larvae. Within cotton plants, our experiments consistently showed that both resistant and susceptible moths did not choose plants or plant parts that were less toxic in terms of Bt toxin on which to lay eggs. There was one exception in that susceptible moths were more likely to lay eggs on squares of Bt cotton plants than squares of non-Bt cotton. As expected, the mortality of susceptible H. armigera neonates was significantly higher on structures of Bt cotton plants than on those structures of conventional cotton, and survival was greater on flowers than on other structures of Bt cotton. This confirms opportunities for selection for resistance, and demonstrates no advantage in this respect to carrying resistance genes that might overcome the Bt toxins.


Subject(s)
Moths/physiology , Oviposition , Plants, Genetically Modified , Animals , Bacillus thuringiensis Toxins , Bacterial Proteins/genetics , Behavior, Animal , Endotoxins/genetics , Female , Gossypium/genetics , Hemolysin Proteins/genetics , Insecticide Resistance , Larva/physiology , Pest Control, Biological
7.
Am J Bot ; 101(1): 45-55, 2014 Jan.
Article in English | MEDLINE | ID: mdl-24368754

ABSTRACT

PREMISE OF THE STUDY: Seedling success is determined by evolved strategies of intrinsic genetic programming and plasticity that are regulated by extrinsic pathways. We tested the relative importance of these mechanisms in red spruce (Picea rubens Sarg.) and balsam fir (Abies balsamea Lin.), which share understory regeneration niches in northeastern North America. Although its reproductive effort is adequate, spruce has decreased in abundance, in relation to fir, in seedling and sapling populations, even in forests that have a predominance of spruce in the overstory. METHODS: To understand the factors that regulate this phenomenon and their implications for tree populations, we compared intrinsic and plastic regulation of first- and second-year seedlings under steady understory irradiance levels and in response to increases in light environment. KEY RESULTS: Both species exhibited interactions of ontogenetic patterns and plasticity in first- and second-year seedlings. Physiologically, spruce had higher photosynthetic capacity, allocation to photoprotective xanthophylls, and greater plasticity in response to light treatments. Although both species demonstrated an inability to plastically increase photosynthetic capacity in the short term, spruce benefited from greater allocation to foliage under increased irradiance. Fir showed a conservative strategy in root-shoot allocation that may better equip seedlings to withstand drought adaptations and attributes associated with greater shade tolerance. CONCLUSIONS: These attributes likely contribute to the relative success of fir seedlings in the current climate. By contrast, they indicate that spruce would be a superior competitor in cooler, moister climates, which suggests that future forest composition will be largely determined by an interaction of disturbance and moisture regimes.


Subject(s)
Abies/physiology , Adaptation, Physiological , Ecosystem , Picea/physiology , Seedlings/growth & development , Abies/anatomy & histology , Abies/radiation effects , Adaptation, Physiological/radiation effects , Biomass , Chlorophyll/metabolism , Fluorescence , Gases/metabolism , Light , Photosynthesis/radiation effects , Picea/anatomy & histology , Picea/radiation effects , Plant Leaves/anatomy & histology , Plant Leaves/physiology , Plant Leaves/radiation effects , Seedlings/radiation effects , Xanthophylls/metabolism
8.
Phys Ther ; 104(3)2024 Mar 01.
Article in English | MEDLINE | ID: mdl-38112119

ABSTRACT

OBJECTIVE: The aim of this study was to explore associations between the utilization of active, passive, and manual therapy interventions for low back pain (LBP) with 1-year escalation-of-care events, including opioid prescriptions, spinal injections, specialty care visits, and hospitalizations. METHODS: This was a retrospective cohort study of 4827 patients identified via the Military Health System Data Repository who received physical therapist care for LBP in 4 outpatient clinics between January 1, 2015 and January 1, 2018. One-year escalation-of-care events were evaluated based on type of physical therapist interventions (ie, active, passive, or manual therapy) received using adjusted odds ratios. RESULTS: Most patients (89.9%) received active interventions. Patients with 10% higher proportion of visits that included at least 1 passive intervention had a 3% to 6% higher likelihood of 1-year escalation-of-care events. Similarly, with 10% higher proportion of passive to active interventions used during the course of care, there was a 5% to 11% higher likelihood of 1-year escalation-of-care events. When compared to patients who received active interventions only, the likelihood of incurring 1-year escalation-of-care events was 50% to 220% higher for those who received mechanical traction and 2 or more different passive interventions, but lower by 50% for patients who received manual therapy. CONCLUSION: Greater use of passive interventions for LBP was associated with elevated odds of 1-year escalation-of-care events. In addition, the use of specific passive interventions such as mechanical traction in conjunction with active interventions resulted in suboptimal escalation-of-care events, while the use of manual therapy was associated with more favorable downstream health care outcomes. IMPACT: Physical therapists should be judicious in the use of passive interventions for the management of LBP as they are associated with greater likelihood of receiving opioid prescriptions, spinal injections, and specialty care visits.


Subject(s)
Low Back Pain , Musculoskeletal Manipulations , Humans , Low Back Pain/therapy , Analgesics, Opioid/therapeutic use , Retrospective Studies , Health Care Costs , Physical Therapy Modalities , Patient Acceptance of Health Care , Prescriptions
9.
Rev Sci Instrum ; 95(9)2024 Sep 01.
Article in English | MEDLINE | ID: mdl-39345168

ABSTRACT

X-ray sources for a range of wavelengths are being considered for in situ calibration of X-ray Imaging Crystal Spectrometers (XICSs) and for monitoring line shifts due to changes in the crystal temperature, which can vary during experimental operation over a day [A. Ince-Cushman et al., Rev. Sci. Instrum. 79, 10E302 (2008), L. Delgado-Aparicio et al., Plasma Phys. Control. Fusion 55, 125011 (2013)]. Such crystal temperature dependent shifts, if not accounted for, could be erroneously interpreted as Doppler shifts leading to errors in plasma flow-velocity measurements. The x-ray sources encompass characteristic x-ray lines falling within the wavelength range of 0.9-4.0 Å, relevant for the XICSs on present and future fusion devices. Several technological challenges associated with the development of x-ray sources for in situ calibration are identified and are being addressed in the design of multiple x-ray tubes, which will be installed inside the spectrometer housing of the XICS for the JT-60SA tokamak. These x-ray sources will be especially useful for in situ calibration between plasma discharges. In this paper, laboratory experiments are described that were conducted with a Cu x-ray source, a heated quartz (102) crystal, and a pixelated Pilatus detector to measure the temperature dependent shifts of the Cu Kα1 and Kα2 lines at 1.5405 and 1.5443 Å, respectively, and to evaluate the 2d-lattice constant for the Bragg reflecting crystal planes as a function of temperature, which, in the case of in situ wavelength calibration, would have to be used for numerical analysis of the x-ray spectra from the plasma.

10.
J Food Sci ; 86(2): 334-342, 2021 Feb.
Article in English | MEDLINE | ID: mdl-33483957

ABSTRACT

Consumption of nutrient-rich seaweeds and fermented nondairy foods represent fast growing trends among health-minded consumers. Assessment of lacto-fermented seaweed was performed to address these trends, and to offer shelf-life extension and product diversification for fresh kelps. The objectives were to evaluate the effects of kelp species and inclusion level on fermentation kinetics, physicochemical quality, safety, shelf-life, and consumer acceptability of a seaweed sauerkraut-style product. Six formulations with different inclusion levels (25, 50, and 75%) of shredded kelp (sugar kelp, SK or winged kelp, WK) were mixed with cabbage, 2% salt, and inoculated with Lactobacillus plantarum (approximately 106 CFU/g) and Leuconostoc mesenteroides (approximately 101 CFU/g). Products were processed in triplicate, fermented until a target pH of ≤4.6 was achieved, and sampled periodically for 60 days. Kelp species and inclusion level significantly affected most variables tested. The most rapid fermentation (3 days), as evidenced by pH decrease, lactic acid bacteria counts, and lactic acid levels, was noted in WK formulations. Some SK formulations took up to 14 days to achieve the target pH, and coliforms persisted to a greater extent in the SK formulations. Higher levels of kelp decreased the fermentation rate and concentration of fermentable sugars in the brine, but increased the total phenolic content and antioxidant activity of the sauerkrauts. Despite differences in instrumental color (L* a* b* ) and texture (shear force) among formulations, overall liking as rated by a consumer panel was not significantly affected by species or inclusion level. Results support the use of lacto-fermentation in the production of refrigeration-stable seaweed sauerkraut-style product. PRACTICAL APPLICATION: Health-conscious consumers are becoming increasingly interested in plant-based diets and fermented foods, and the development of novel seaweed sauerkraut-style products can help to meet these needs. This study demonstrated the successful production of a sauerkraut-style product formulated with up to 50% farm-raised kelp. Physical, chemical, microbiological, and consumer acceptability testing established lactic acid fermentation as a viable method for shelf life extension and value addition of fresh kelps. These results provide science-based information on an alternative processing method for cultivated seaweeds and can assist the industry in product diversification efforts.


Subject(s)
Brassica/microbiology , Fermentation , Kelp/microbiology , Lactic Acid/metabolism , Sensation , Antioxidants , Brassica/chemistry , Chemical Phenomena , Consumer Behavior , Fermented Foods/analysis , Fermented Foods/microbiology , Food Microbiology , Humans , Hydrogen-Ion Concentration , Kelp/chemistry , Lactobacillus plantarum/metabolism , Leuconostoc mesenteroides/metabolism , Salts
11.
Vet Pathol ; 47(1): 58-76, 2010 Jan.
Article in English | MEDLINE | ID: mdl-20080486

ABSTRACT

Coronary arterial disease (CAD) is the leading cause of death in the United States, the European Union, and Canada. Percutaneous coronary intervention (PCI) has revolutionized the treatment of CAD, and it is the advent of drug-eluting stent (DES) systems that has effectively allayed much of the challenge of restenosis that has plagued the success of PCI through its 30-year history. However, DES systems have not been a panacea: There yet remain the challenges associated with interventions involving bare metallic stents as well as newly arisen concerns related to the application of DES systems. To effectively address these novel and ongoing issues, animal models are relied on both to project the safety and efficacy of endovascular devices and to provide insight into the pathophysiology underlying the vascular response to injury and mechanisms of restenosis. In this review, preclinical models of restenosis are presented, and their application and limitation in the evaluation of device-based interventional technologies for the treatment of CAD are discussed.


Subject(s)
Coronary Restenosis/therapy , Disease Models, Animal , Drug-Eluting Stents , Animals , Coronary Disease/therapy , Coronary Restenosis/prevention & control , Dogs , Drug-Eluting Stents/adverse effects , Mice , Primates , Rabbits , Rats , Sheep , Swine
12.
Bull Entomol Res ; 100(5): 591-8, 2010 Oct.
Article in English | MEDLINE | ID: mdl-20504381

ABSTRACT

The distribution and movement of 1st instar Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae) larvae on whole garden pea (Pisum sativum L.) plants were determined in glasshouse trials. This economically-important herbivore attacks a wide variety of agricultural, horticultural and indigenous plants. To investigate the mechanisms underlying larval intra-plant movement, we used early-flowering and wild-type plant genotypes and placed eggs at different vertical heights within the plants, one egg per plant. Leaf water and nitrogen content and cuticle hardness were measured at the different plant heights. Of 92 individual larvae, 41% did not move from the node of eclosion, 49% moved upwards and 10% moved downwards with the distance moved being between zero and ten plant nodes. Larvae from eggs placed on the lower third of the plant left the natal leaf more often and moved further than larvae from eggs placed in the middle or upper thirds. The low nutritive value of leaves was the most likely explanation for more movement away from lower plant regions. Although larvae on flowering plants did not move further up or down than larvae on non-flowering plants, they more often departed the leaflet (within a leaf) where they eclosed. The final distribution of larvae was affected by plant genotype, with larvae on flowering plants found less often on leaflets and more often on stipules, tendrils and reproductive structures. Understanding intra-plant movement by herbivorous insects under natural conditions is important because such movement determines the value of economic loss to host crops. Knowing the behaviour underlying the spatial distribution of herbivores on plants will assist us to interpret field data and should lead to better informed pest management decisions.


Subject(s)
Moths/growth & development , Pisum sativum/growth & development , Animals , Feeding Behavior , Flowers/growth & development , Genotype , Larva/physiology , Moths/physiology , Oviposition , Pisum sativum/anatomy & histology , Pisum sativum/genetics , Population Density
13.
J Econ Entomol ; 113(3): 1221-1226, 2020 06 06.
Article in English | MEDLINE | ID: mdl-32206805

ABSTRACT

Black soldier fly larvae, Hermetia illucens (L.), are used to convert organic waste streams into insect-based animal feeds. We tested their ability to retain alpha-linolenic acid (ALA), eicosapentaenoic acid (EPA), and docosahexaenoic acid (DHA) from feeding substrates, which has important implications for their use in aquaculture. When supplementing a chicken feed diet with increasing concentrations of salmon oil (0-42%) over an increasing number of days (0-8), the concentrations of the three omega-3 acids in larvae increased significantly. Larval survival and biomass accumulation were not affected. Supplementing a chicken feed diet with increasing concentrations (0-14%) of Tetraselmis chui Butcher (Chlorodendrales: Chlorodendraceae) microalgae paste also significantly increased ALA and EPA contents of the harvested larvae. However, microalgae also decreased survival, harvested biomass, and individual growth of larvae feeding on the diet with the highest supplement concentration (14%). DHA was not detected in any microalgae diet or subsequent larval tissue samples. All three omega-3 polyunsaturated fatty acids tested in this study were accumulated in dose-dependent manner, with quadratic, and occasionally linear, equations providing the best description of the observed relationships. There were significant negative correlations between several fatty acids, indicating that they may replace one another in living larvae. Our findings confirm that black soldier fly larvae can retain ingested fatty acids and change fatty acid profiles in their tissues accordingly. However, optimizing nutrient content of harvestable larvae is likely to be more complicated than simply enriching their diets with omega-3 fatty acids.


Subject(s)
Diptera , Fatty Acids, Omega-3 , Simuliidae , Animal Feed , Animals , Diet , Larva
14.
Nat Commun ; 11(1): 2785, 2020 06 05.
Article in English | MEDLINE | ID: mdl-32503997

ABSTRACT

While current technology permits inference of dynamic brain networks over long time periods at high temporal resolution, the detailed structure of dynamic network communities during human seizures remains poorly understood. We introduce a new methodology that addresses critical aspects unique to the analysis of dynamic functional networks inferred from noisy data. We propose a dynamic plex percolation method (DPPM) that is robust to edge noise, and yields well-defined spatiotemporal communities that span forward and backwards in time. We show in simulation that DPPM outperforms existing methods in accurately capturing certain stereotypical dynamic community behaviors in noisy situations. We then illustrate the ability of this method to track dynamic community organization during human seizures, using invasive brain voltage recordings at seizure onset. We conjecture that application of this method will yield new targets for surgical treatment of epilepsy, and more generally could provide new insights in other network neuroscience applications.


Subject(s)
Brain/physiopathology , Nerve Net/physiopathology , Adult , Algorithms , Computer Simulation , Electrodes , Humans , Male , Seizures/physiopathology , Time Factors
15.
Am J Primatol ; 71(8): 680-6, 2009 Aug.
Article in English | MEDLINE | ID: mdl-19434629

ABSTRACT

For managers of captive populations it is important to know whether their management provides a species with the physical and social environment that maximizes its survivorship. To determine this, survivorship comparisons with wild populations and long-term evaluations of captive populations are important. Here we provide both for orangutans. We show that survivorship has increased during the past 60 years for captive orangutan populations in zoos. In addition, we show that survivorship of captive orangutans in the past used to be lower than for wild orangutans, but that for recently born (1986-2005) orangutans survivorship is not significantly different from the wild. This indicates that captive management in the past was suboptimal for orangutan survivorship, but that modern management of captive orangutans has increased their survivorship. We discuss the possible factors of modern management that could have influenced this.


Subject(s)
Environment , Longevity , Pongo pygmaeus/physiology , Animals , Animals, Wild , Animals, Zoo , Borneo , Female , Indonesia , Male , Mortality , Sex Characteristics , Survival Rate
16.
Sci Adv ; 5(10): eaaw5461, 2019 10.
Article in English | MEDLINE | ID: mdl-31681837

ABSTRACT

Since the inauguration of Donald Trump, there has been substantial and ongoing protest against the Administration. Street demonstrations are some of the most visible forms of opposition to the Administration and its policies. This article reviews the two most central methods for studying street protest on a large scale: building comprehensive event databases and conducting field surveys of participants at demonstrations. After discussing the broader development of these methods, this article provides a detailed assessment of recent and ongoing projects studying the current wave of contention. Recommendations are offered to meet major challenges, including making data publicly available in near real time, increasing the validity and reliability of event data, expanding the scope of crowd surveys, and integrating ongoing projects in a meaningful way by building new research infrastructure.

17.
Dev Neurosci ; 30(1-3): 211-20, 2008.
Article in English | MEDLINE | ID: mdl-18075267

ABSTRACT

The subplate is a transient structure essential for normal development of the cortex. We used magnetic resonance imaging of the fetal brain to assess cortical subplate evolution between 20 and 35 weeks gestation. Two-dimensional measures of diameter were obtained for the cortex, subplate and fetal white matter. The subplate was originally seen as a continuous band at early gestations measuring up to 4.5 mm. It became magnetic resonance invisible from approximately 28 weeks initially from the depths of the sulci and then from the tops of the gyri. The disappearance of the subplate was regional, involuting most rapidly in the parietal lobe and remaining prominent in the anterior temporal lobe up to 35 weeks. x


Subject(s)
Cell Movement/physiology , Cerebral Cortex/embryology , Fetus/embryology , Magnetic Resonance Imaging/methods , Neurons/physiology , Stem Cells/physiology , Brain Mapping/methods , Cell Differentiation/physiology , Cerebral Cortex/physiology , Cerebral Ventricles/embryology , Cerebral Ventricles/physiology , Female , Fetal Development/physiology , Fetus/physiology , Gestational Age , Humans , Image Processing, Computer-Assisted/methods , Neural Pathways/embryology , Neural Pathways/physiology , Neurons/cytology , Parietal Lobe/embryology , Parietal Lobe/physiology , Pregnancy , Stem Cells/cytology , Telencephalon/embryology , Telencephalon/physiology , Temporal Lobe/embryology , Temporal Lobe/physiology , Time Factors
18.
J Neural Eng ; 15(6): 066002, 2018 12.
Article in English | MEDLINE | ID: mdl-30127101

ABSTRACT

OBJECTIVE: Optical techniques for recording and manipulating neural activity have traditionally been constrained to superficial brain regions due to light scattering. New techniques are needed to extend optical access to large 3D volumes in deep brain areas, while retaining local connectivity. APPROACH: We have developed a method to implant bundles of hundreds or thousands of optical microfibers, each with a diameter of 8 µm. During insertion, each fiber moves independently, following a path of least resistance. The fibers achieve near total internal reflection, enabling optically interfacing with the tissue near each fiber aperture. MAIN RESULTS: At a depth of 3 mm, histology shows fibers consistently splay over 1 mm in diameter throughout the target region. Immunohistochemical staining after chronic implants reveals neurons in close proximity to the fiber tips. Models of photon fluence indicate that fibers can be used as a stimulation light source to precisely activate distinct patterns of neurons by illuminating a subset of fibers in the bundle. By recording fluorescent beads diffusing in water, we demonstrate the recording capability of the fibers. SIGNIFICANCE: Our histology, modeling and fluorescent bead recordings suggest that the optical microfibers may provide a minimally invasive, stable, bidirectional interface for recording or stimulating genetic probes in deep brain regions-a hyper-localized form of fiber photometry.


Subject(s)
Brain/physiology , Fiber Optic Technology , Finches/physiology , Optogenetics/instrumentation , Photic Stimulation/instrumentation , Animals , Fluorescent Dyes , Immunohistochemistry , Neurons/physiology , Optogenetics/methods , Photic Stimulation/methods , Photons , Prostheses and Implants
19.
Neurophotonics ; 5(4): 045009, 2018 Oct.
Article in English | MEDLINE | ID: mdl-30627593

ABSTRACT

Previously introduced bundles of hundreds or thousands of microfibers have the potential to extend optical access to deep brain regions, sampling fluorescence activity throughout a three-dimensional volume. Each fiber has a small diameter ( 8 µ m ) and follows a path of least resistance, splaying during insertion. By superimposing the fiber sensitivity profile for each fiber, we model the interface properties for a simulated neural population. Our modeling results suggest that for small ( < 200 ) bundles of fibers, each fiber will collect fluorescence from a small number of nonoverlapping neurons near the fiber apertures. As the number of fibers increases, the bundle delivers more uniform excitation power to the region, moving to a regime where fibers collect fluorescence from more neurons and there is greater overlap between neighboring fibers. Under these conditions, it becomes feasible to apply source separation to extract individual neural contributions. In addition, we demonstrate a source separation technique particularly suited to the interface. Our modeling helps establish performance expectations for this interface and provides a framework for estimating neural contributions under a range of conditions.

20.
Mol Cell Biol ; 10(6): 3232-8, 1990 Jun.
Article in English | MEDLINE | ID: mdl-2111451

ABSTRACT

The Drosophila heat shock cognate gene 4 (hsc4), a member of the hsp70 gene family, encodes an abundant protein, hsc70, that is more similar to the constitutively expressed human protein than the Drosophila heat-inducible hsp70. Developmental expression revealed that hsc4 transcripts are enriched in cells active in endocytosis and those undergoing rapid growth and changes in shape.


Subject(s)
Drosophila melanogaster/genetics , Heat-Shock Proteins/genetics , Amino Acid Sequence , Animals , Base Sequence , Drosophila melanogaster/embryology , Embryo, Nonmammalian/physiology , Exons , Genes , Humans , Molecular Sequence Data , Multigene Family , Restriction Mapping , Sequence Homology, Nucleic Acid , Transcription, Genetic
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