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1.
J Org Chem ; 89(10): 7339-7346, 2024 May 17.
Article in English | MEDLINE | ID: mdl-38662477

ABSTRACT

NHC-catalyzed [4+2] annulation of 2H-azirine-2-carbaldehydes with ketimines and isocyanates has been developed, providing straightforward synthetic protocols for constructing structurally intriguing pyrimido[1,2-a]indolediones and pyrimidinediones under mild conditions with excellent yields. This protocol can be used to synthesize the core skeleton of pharmaceutically important drugs and pyrimido[1,2-a]indoledione-containing natural products, making it potentially valuable for creating biologically active derivatives.

2.
J Org Chem ; 87(15): 9593-9606, 2022 Aug 05.
Article in English | MEDLINE | ID: mdl-35833878

ABSTRACT

Asymmetric α-regioselective annulation of MBH carbonates with 4-arylmethylisoxazol-5-ones has been developed to afford spirocyclic oxindole derivatives containing three contiguous stereogenic centers and vicinal all-carbon quaternary chiral centers. This reaction exhibits a broad substrate scope and excellent functional group tolerance. Excellent yields with high diastereo- and enantioselectivities were obtained in this efficient organocatalytic reaction.

3.
J Nat Prod ; 82(7): 2009-2012, 2019 07 26.
Article in English | MEDLINE | ID: mdl-31244148

ABSTRACT

As part of an ongoing program to identify sex attractant pheromone components that mediate sexual communication in yellowjacket wasps, a novel sesquiterpene was isolated from body surface extracts of virgin bald-faced hornet queens, Dolichovespula maculata. The gross structure of this sesquiterpene was proposed through microscale spectroscopic analyses, and the configuration of the central olefin was subsequently confirmed by total synthesis. This new natural product (termed here dolichovespulide) represents an important addition to the relatively small number of terpenoids reported from the taxonomic insect family Vespidae.


Subject(s)
Wasps/chemistry , Animals , Chromatography, High Pressure Liquid , Molecular Structure , Spectrum Analysis/methods
4.
Angew Chem Int Ed Engl ; 57(36): 11618-11622, 2018 09 03.
Article in English | MEDLINE | ID: mdl-29890016

ABSTRACT

Yellowjackets in the genera Vespula and Dolichovespula are prevalent eusocial insects of great ecological and economic significance, but the chemical signals of their sexual communication systems have defied structural elucidation. Herein, we report the identification of sex attractant pheromone components of virgin bald-faced hornet queens (Dolichovespula maculata). We analyzed body surface extracts of queens by coupled gas chromatographic-electroantennographic detection (GC-EAD), isolated the compounds that elicited responses from male antennae by high-performance liquid chromatography (HPLC), and identified these components by GC mass spectrometry (MS), HPLC-MS, and NMR spectroscopy. In laboratory olfactometer experiments, synthetic (2Z,7E)-3,7-dimethyldeca-2,7-diendioic acid (termed here maculatic acid A) and (2Z,7E)-10-methoxy-3,7-dimethyldeca-10-oxo-deca-2,7-dienoic acid (termed here maculatic acid C) in binary combination significantly attracted bald-faced hornet males. These are the first sex attractant pheromone components identified in yellowjackets.


Subject(s)
Pheromones/metabolism , Sex Attractants/metabolism , Wasps/metabolism , Animals , Chromatography, High Pressure Liquid , Female , Gas Chromatography-Mass Spectrometry , Magnetic Resonance Spectroscopy , Male , Pheromones/analysis , Sex Attractants/analysis , Wasps/chemistry
5.
Angew Chem Int Ed Engl ; 55(10): 3500-3, 2016 Mar 01.
Article in English | MEDLINE | ID: mdl-26845231

ABSTRACT

The total synthesis of strictamine has been achieved in nine steps from a known enol triflate. Characteristic features of our approach included: a) creation of a C7 all-carbon quaternary stereocenter at an early synthetic stage; b) use of an N,N-dimethyl tertiary amine as a surrogate of the primary amine for the rapid build-up of a functionalized 2-azabicyclo[3,3,1]nonan-9-one skeleton (achieved by using a reaction sequence of α-bromination of the ketone, followed by a stereoconvergent intramolecular nucleophilic substitution reaction); and c) a late-stage construction of the indolenine unit.

6.
Angew Chem Int Ed Engl ; 53(7): 1818-21, 2014 Feb 10.
Article in English | MEDLINE | ID: mdl-24452861

ABSTRACT

A total synthesis of aspidophylline A, a pentacyclic akuammiline-type monoterpene indole alkaloid, is described. The synthesis features: 1) rapid access to a fully functionalized dihydrocarbazole through the desymmetrization of readily available 2-allyl-2-(o-nitrophenyl)cyclohexane-1,3-dione; 2) an intramolecular azidoalkoxylation of an enecarbamate to install both the furoindoline ring and the azido functionality; and 3) an intramolecular Michael addition for the construction of the 2-azabicyclo[3.3.1]nonane ring system.


Subject(s)
Heterocyclic Compounds, 4 or More Rings/chemical synthesis , Heterocyclic Compounds, 4 or More Rings/chemistry , Stereoisomerism
7.
Org Lett ; 26(9): 1770-1774, 2024 Mar 08.
Article in English | MEDLINE | ID: mdl-38353481

ABSTRACT

General and efficient strategies for highly diastereoselective synthesis of divergent heterocyclic scaffolds through desymmetric [3+3] cycloaddition of p-quinamines with 1,3-dipole surrogates hydroximoyl halides and α-halohydroxamates have been developed. This synthetic protocol provided a variety of heterocyclic architectures containing 1,2,4-oxadiazine and hydroquinoxaline skeletons in good yields with a wide substrate scope.

8.
Opt Lett ; 38(10): 1727-9, 2013 May 15.
Article in English | MEDLINE | ID: mdl-23938925

ABSTRACT

This Letter proposes a rapid method for automatic salient object detection inspired by the idea that an image consists of redundant information and novelty fluctuations. We believe object detection can be achieved by removing the nonsalient parts and focusing on the salient object. Considering the relation between the composition of the image and the aim of object detection, we constructed what we believe is a more reliable saliency map to evaluate the image composition. The local energy feature is combined with a simple biologically inspired model (color, intensity, orientation) to strengthen the integrity of the object in the saliency map. We estimated the entropy of the object via the maximum entropy method. Then, we removed pixels of minimal intensity from the original image and compute the entropy of the resulting images, correlating this entropy with the object entropy. Our experimental results show that the algorithm outperforms the state-of-the-art methods and is more suitable in real-time applications.

9.
Angew Chem Int Ed Engl ; 51(28): 6984-8, 2012 Jul 09.
Article in English | MEDLINE | ID: mdl-22674838

ABSTRACT

Let's swap: a scalable, atom-economic, enantio-, and diastereoselective synthetic route to trisubstituted γ-butyrolactones based on a Wagner-Meerwein-type dyotropic rearrangement of cis-ß-lactones is described. This methodology was applied in efficient and protecting-group-free formal syntheses and total syntheses of various xanthanolide natural products.


Subject(s)
4-Butyrolactone/chemistry , Biological Products/chemical synthesis , Lactones/chemistry , Sesquiterpenes/chemical synthesis , Xanthium/chemistry , Molecular Structure , Stereoisomerism
10.
Org Lett ; 24(42): 7727-7731, 2022 Oct 28.
Article in English | MEDLINE | ID: mdl-36250632

ABSTRACT

The asymmetric catalytic [4 + 2] cycloannulation of ortho-aminophenyl p-QMs with different types of alkenes for the construction of tetrahydroquinolines containing three contiguous stereogenic centers was developed. This is the first example of catalytic asymmetric cycloannulation of ortho-aminophenyl p-QMs. This reaction exhibits excellent functional group tolerance. Excellent yields, exclusive diastereoselectivities, and high enantioselectivities were obtained in this efficient organocatalytic reaction.


Subject(s)
Indolequinones , Quinolines , Molecular Structure
11.
Commun Biol ; 5(1): 1156, 2022 10 30.
Article in English | MEDLINE | ID: mdl-36310293

ABSTRACT

Female web-building spiders disseminate pheromone from their webs that attracts mate-seeking males and deposit contact pheromone on their webs that induces courtship by males upon arrival. The source of contact and mate attractant pheromone components, and the potential ability of females to adjust their web's attractiveness, have remained elusive. Here, we report three new contact pheromone components produced by female false black widow spiders, Steatoda grossa: N-4-methylvaleroyl-O-butyroyl-L-serine, N-4-methylvaleroyl-O-isobutyroyl-L-serine and N-4-methylvaleroyl-O-hexanoyl-L-serine. The compounds originate from the posterior aggregate silk gland, induce courtship by males, and web pH-dependently hydrolyse at the carboxylic-ester bond, giving rise to three corresponding carboxylic acids that attract males. A carboxyl ester hydrolase (CEH) is present on webs and likely mediates the functional transition of contact sex pheromone components to the carboxylic acid mate attractant pheromone components. As CEH activity is pH-dependent, and female spiders can manipulate their silk's pH, they might also actively adjust their webs' attractiveness.


Subject(s)
Sex Attractants , Spiders , Animals , Male , Female , Sex Attractants/pharmacology , Serine , Silk/chemistry , Esters
12.
Comput Intell Neurosci ; 2021: 5557184, 2021.
Article in English | MEDLINE | ID: mdl-34135950

ABSTRACT

Relation classification is an important semantic processing task in the field of natural language processing (NLP). Data sources generally adopt remote monitoring strategies to automatically generate large-scale training data, which inevitably causes label noise problems. At the same time, another challenge is that important information can appear at any place in the sentence. This paper presents a sentence-level joint relation classification model. The model has two modules: a reinforcement learning (RL) agent and a joint network model. In particular, we combine bidirectional long short-term memory (Bi-LSTM) and attention mechanism as a joint model to process the text features of sentences and classify the relation between two entities. At the same time, we introduce an attention mechanism to discover hidden information in sentences. The joint training of the two modules solves the noise problem in relation extraction, sentence-level information extraction, and relation classification. Experimental results demonstrate that the model can effectively deal with data noise and achieve better relation classification performance at the sentence level.


Subject(s)
Language , Natural Language Processing , Information Storage and Retrieval , Reinforcement, Psychology , Semantics
13.
Commun Chem ; 4(1): 96, 2021 Jun 24.
Article in English | MEDLINE | ID: mdl-36697548

ABSTRACT

Glycomimetics are structural mimics of naturally occurring carbohydrates and represent important therapeutic leads in several disease treatments. However, the structural and stereochemical complexity inherent to glycomimetics often challenges medicinal chemistry efforts and is incompatible with diversity-oriented synthesis approaches. Here, we describe a one-pot proline-catalyzed aldehyde α-functionalization/aldol reaction that produces an array of stereochemically well-defined glycomimetic building blocks containing fluoro, chloro, bromo, trifluoromethylthio and azodicarboxylate functional groups. Using density functional theory calculations, we demonstrate both steric and electrostatic interactions play key diastereodiscriminating roles in the dynamic kinetic resolution. The utility of this simple process for generating large and diverse libraries of glycomimetics is demonstrated in the rapid production of iminosugars, nucleoside analogues, carbasugars and carbohydrates from common intermediates.

14.
Chem Sci ; 11(38): 10488-10495, 2020 Sep 16.
Article in English | MEDLINE | ID: mdl-34094307

ABSTRACT

Carbasugars are structural mimics of naturally occurring carbohydrates that can interact with and inhibit enzymes involved in carbohydrate processing. In particular, carbasugars have attracted attention as inhibitors of glycoside hydrolases (GHs) and as therapeutic leads in several disease areas. However, it is unclear how the carbasugars are recognized and processed by GHs. Here, we report the synthesis of three carbasugar isotopologues and provide a detailed transition state (TS) analysis for the formation of the initial GH-carbasugar covalent intermediate, as well as for hydrolysis of this intermediate, using a combination of experimentally measured kinetic isotope effects and hybrid QM/MM calculations. We find that the α-galactosidase from Thermotoga maritima effectively stabilizes TS charge development on a remote C5-allylic center acting in concert with the reacting carbasugar, and catalysis proceeds via an exploded, or loose, SN2 transition state with no discrete enzyme-bound cationic intermediate. We conclude that, in complement to what we know about the TS structures of enzyme-natural substrate complexes, knowledge of the TS structures of enzymes reacting with non-natural carbasugar substrates shows that GHs can stabilize a wider range of positively charged TS structures than previously thought. Furthermore, this enhanced understanding will enable the design of new carbasugar GH transition state analogues to be used as, for example, chemical biology tools and pharmaceutical lead compounds.

15.
Org Lett ; 10(4): 665-8, 2008 Feb 21.
Article in English | MEDLINE | ID: mdl-18215052

ABSTRACT

The 7-8 bicyclic ring system of micrandilactone A (1) with the required stereochemistry and functional groups was constructed by a Bu3Al-promoted Claisen rearrangement. Computational studies indicated that the exocyclic vinyl ether undergoes a [3,3] sigmatropic process via a chairlike transition state to afford exclusively the Z-double bond in the newly generated 8-membered ring with a high level of chirality transfer.


Subject(s)
Lactones/chemical synthesis , Plants, Medicinal/chemistry , Schisandra/chemistry , Triterpenes/chemical synthesis , Catalysis , Cyclization , Lactones/chemistry , Lactones/isolation & purification , Molecular Structure , Stereoisomerism , Triterpenes/chemistry , Triterpenes/isolation & purification
16.
Nat Commun ; 9(1): 3700, 2018 09 07.
Article in English | MEDLINE | ID: mdl-30194298

ABSTRACT

In the originally published version of this Article, the affiliation details for Tracey M. Gloster were incorrectly given as 'Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada'. The correct affiliation is 'Biomedical Sciences Research Complex, University of St Andrews, North Haugh, St Andrews, Fife, KY16 9ST, UK'. This has now been corrected in both the PDF and HTML versions of the Article.

17.
Nat Commun ; 9(1): 3243, 2018 08 13.
Article in English | MEDLINE | ID: mdl-30104598

ABSTRACT

Mechanism-based glycoside hydrolase inhibitors are carbohydrate analogs that mimic the natural substrate's structure. Their covalent bond formation with the glycoside hydrolase makes these compounds excellent tools for chemical biology and potential drug candidates. Here we report the synthesis of cyclohexene-based α-galactopyranoside mimics and the kinetic and structural characterization of their inhibitory activity toward an α-galactosidase from Thermotoga maritima (TmGalA). By solving the structures of several enzyme-bound species during mechanism-based covalent inhibition of TmGalA, we show that the Michaelis complexes for intact inhibitor and product have half-chair (2H3) conformations for the cyclohexene fragment, while the covalently linked intermediate adopts a flattened half-chair (2H3) conformation. Hybrid QM/MM calculations confirm the structural and electronic properties of the enzyme-bound species and provide insight into key interactions in the enzyme-active site. These insights should stimulate the design of mechanism-based glycoside hydrolase inhibitors with tailored chemical properties.


Subject(s)
Carbasugars/pharmacology , Enzyme Inhibitors/pharmacology , Glycoside Hydrolases/antagonists & inhibitors , Biocatalysis , Carbasugars/chemical synthesis , Carbasugars/chemistry , Catalytic Domain , Cyclohexenes/chemical synthesis , Cyclohexenes/chemistry , Enzyme Inhibitors/chemical synthesis , Enzyme Inhibitors/chemistry , Galactose/analogs & derivatives , Glycoside Hydrolases/chemistry , Kinetics , Molecular Dynamics Simulation , Quantum Theory , Thermotoga maritima/enzymology
19.
Chem Asian J ; 7(10): 2321-33, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22761005

ABSTRACT

First-generation synthetic strategies for the diastereoselective total synthesis of schindilactone A (1) are presented and methods for the synthesis of the ABC, FGH, and CDEF moieties are explored. We have established a method for the synthesis of the ABC moiety, which included both a Diels-Alder reaction and a ring-closing metathesis as the key steps. We have also developed a method for the synthesis of the FGH moiety, which involved the use of a Pauson-Khand reaction and a carbonylative annulation reaction as the key steps. Furthermore, we have achieved the construction of the central 7-8 bicyclic ring system by using a [3,3]-rearrangement as the key step. However, unfortunately, when this rearrangement reaction was applied to the construction of the more advanced CDEF moiety, the anticipated annulation reaction did not occur and the development of an alternative synthetic strategy would be required for the construction of this central core.


Subject(s)
Triterpenes/chemical synthesis , Crystallography, X-Ray , Cycloaddition Reaction , Molecular Conformation , Stereoisomerism , Triterpenes/chemistry
20.
Chem Asian J ; 7(10): 2334-40, 2012 Oct.
Article in English | MEDLINE | ID: mdl-22761018

ABSTRACT

The successful synthesis of the highly complex model compound (2) of the CEFGH ring system of schindilactone A (1) is described. Several synthetic methodologies were developed and applied to achieve this goal, including ring-closing metathesis (RCM) and Co-thiourea-catalyzed Pauson-Khand reactions. Furthermore, two independent approaches were developed for the construction of the GH ring of model compound 2, the key steps of which included Pd-thiourea-catalyzed carbonylative annulation, methylation, and sequential RCM/oxa-Michael-addition reactions. The chemistry developed herein has provided a greater understanding of the synthesis of schindilactone A (1) and its analogous compounds of the same family.


Subject(s)
Triterpenes/chemical synthesis , Catalysis , Crystallography, X-Ray , Cyclization , Lactones/chemistry , Methylation , Molecular Conformation , Palladium/chemistry , Stereoisomerism , Thiourea/chemistry , Triterpenes/chemistry
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