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1.
Curr Issues Mol Biol ; 43(2): 529-542, 2021 Jun 30.
Article in English | MEDLINE | ID: mdl-34208944

ABSTRACT

Disconnected (disco)-interacting protein 2 homolog B (Dip2B) is a member of the Dip2 superfamily and plays an essential role in axonal outgrowth during embryogenesis. In adults, Dip2B is highly expressed in different brain regions, as shown by in situ analysis, and may have a role in axon guidance. However, the expression and biological role of Dip2B in other somatic tissues remain unknown. To better visualize Dip2B expression and to provide insight into the roles of Dip2B during postnatal development, we used a Dip2btm1a(wtsi)komp knock-in mouse model, in which a LacZ-Neo fusion protein is expressed under Dip2b promoter and allowed Dip2B expression to be analyzed by X-gal staining. qPCR analyses showed that Dip2b mRNA was expressed in a variety of somatic tissues, including lung and kidney, in addition to brain. LacZ staining indicated that Dip2B is broadly expressed in neuronal, reproductive, and vascular tissues as well as in the kidneys, heart, liver, and lungs. Moreover, neurons and epithelial cells showed rich staining. The broad and intense patterns of Dip2B expression in adult mice provide evidence of the distribution of Dip2B in multiple locations and, thereby, its implication in numerous physiological roles.


Subject(s)
Gene Expression , Genes, Reporter , Lac Operon , Nerve Tissue Proteins/genetics , Animals , Biomarkers , Female , Genotyping Techniques , Immunohistochemistry , Male , Mice , Mice, Knockout , Mice, Transgenic , Nerve Tissue Proteins/metabolism , Organ Specificity
2.
J Pineal Res ; 69(3): e12681, 2020 Oct.
Article in English | MEDLINE | ID: mdl-32640090

ABSTRACT

A physiologically based model of arousal dynamics is improved to incorporate the effects of the light spectrum on circadian phase resetting, melatonin suppression, and subjective sleepiness. To account for these nonvisual effects of light, melanopic irradiance replaces photopic illuminance that was used previously in the model. The dynamic circadian oscillator is revised according to the melanopic irradiance definition and tested against experimental circadian phase resetting dose-response and phase response data. Melatonin suppression function is recalibrated against melatonin dose-response data for monochromatic and polychromatic light sources. A new light-dependent term is introduced into the homeostatic weight component of subjective sleepiness to represent the direct alerting effect of light; the new term responds to light change in a time-dependent manner and is calibrated against experimental data. The model predictions are compared to a total of 14 experimental studies containing 26 data sets for 14 different spectral light profiles. The revised melanopic model shows on average 1.4 times lower prediction error for circadian phase resetting compared to the photopic-based model, 3.2 times lower error for melatonin suppression, and 2.1 times lower error for subjective sleepiness. Overall, incorporating melanopic irradiance allowed simulation of wavelength-dependent responses to light and could explain the majority of the observations. Moving forward, models of circadian phase resetting and the direct effects of light on alertness and sleep need to use nonvisual photoreception-based measures of light, for example, melanopic irradiance, instead of the traditionally used illuminance based on the visual system.


Subject(s)
Circadian Rhythm , Melatonin/metabolism , Models, Neurological , Rod Opsins/metabolism , Sleep/physiology , Sleepiness , Wakefulness/physiology , Humans
3.
Biol Cybern ; 112(5): 465-482, 2018 10.
Article in English | MEDLINE | ID: mdl-30019237

ABSTRACT

Evoked response potentials (ERPs) and other transients are modeled as impulse responses using physiology-based neural field theory (NFT) of the corticothalamic system of neural activity in the human brain that incorporates synaptic and dendritic dynamics, firing response, axonal propagation, and corticocortical and corticothalamic pathways. The properties of model-predicted ERPs are explored throughout the stability zone of the corticothalamic system, and predicted time series and wavelet spectra are also analyzed. This provides a unified treatment of predicted ERPs for both normal and abnormal states within the brain's stability zone, including likely parameters to represent abnormal states of reduced arousal.


Subject(s)
Brain/physiology , Evoked Potentials/physiology , Models, Neurological , Neural Pathways/physiology , Cerebral Cortex/physiology , Electroencephalography , Humans , Spectrum Analysis , Thalamus/physiology
4.
Biol Cybern ; 111(2): 149-164, 2017 04.
Article in English | MEDLINE | ID: mdl-28251306

ABSTRACT

To interrelate K-complexes, spindles, evoked response potentials (ERPs), and spontaneous electroencephalography (EEG) using neural field theory (NFT), physiology-based NFT of the corticothalamic system is used to model cortical excitatory and inhibitory populations and thalamic relay and reticular nuclei. The impulse response function of the model is used to predict the responses to impulses, which are compared with transient waveforms in sleep studies. Fits to empirical data then allow underlying brain physiology to be inferred and compared with other waves. Spontaneous K-complexes, spindles, and other transient waveforms can be reproduced using NFT by treating them as evoked responses to impulsive stimuli with brain parameters appropriate to spontaneous EEG in sleep stage 2. Using this approach, spontaneous K-complexes and sleep spindles can be analyzed using the same single theory as previously been used to account for waking ERPs and other EEG phenomena. As a result, NFT can explain a wide variety of transient waveforms that have only been phenomenologically classified to date. This enables noninvasive fitting to be used to infer underlying physiological parameters. This physiology-based model reproduces the time series of different transient EEG waveforms; it has previously reproduced experimental EEG spectra, and waking ERPs, and many other observations, thereby unifying transient sleep waveforms with these phenomena.


Subject(s)
Evoked Potentials , Models, Neurological , Sleep , Cerebral Cortex , Electroencephalography , Humans , Thalamus
5.
ArXiv ; 2024 Apr 22.
Article in English | MEDLINE | ID: mdl-38711435

ABSTRACT

Recently discovered constituents of the brain waves-the oscillons-provide high-resolution representation of the extracellular field dynamics. Here we study the most robust, highest-amplitude oscillons that manifest in actively behaving rats and generally correspond to the traditional θ-waves. We show that the resemblances between θ-oscillons and the conventional θ-waves apply to the ballpark characteristics-mean frequencies, amplitudes, and bandwidths. In addition, both hippocampal and cortical oscillons exhibit a number of intricate, behavior-attuned, transient properties that suggest a new vantage point for understanding the θ-rhythms' structure, origins and functions. We demonstrate that oscillons are frequency-modulated waves, with speed-controlled parameters, embedded into a noise background. We also use a basic model of neuronal synchronization to contextualize and to interpret the observed phenomena. In particular, we argue that the synchronicity level in physiological networks is fairly weak and modulated by the animal's locomotion.

6.
bioRxiv ; 2024 Apr 25.
Article in English | MEDLINE | ID: mdl-38712230

ABSTRACT

Recently discovered constituents of the brain waves-the oscillons-provide high-resolution representation of the extracellular field dynamics. Here we study the most robust, highest-amplitude oscillons that manifest in actively behaving rats and generally correspond to the traditional θ-waves. We show that the resemblances between θ-oscillons and the conventional θ-waves apply to the ballpark characteristics-mean frequencies, amplitudes, and bandwidths. In addition, both hippocampal and cortical oscillons exhibit a number of intricate, behavior-attuned, transient properties that suggest a new vantage point for understanding the θ-rhythms' structure, origins and functions. We demonstrate that oscillons are frequency-modulated waves, with speed-controlled parameters, embedded into a noise background. We also use a basic model of neuronal synchronization to contextualize and to interpret the observed phenomena. In particular, we argue that the synchronicity level in physiological networks is fairly weak and modulated by the animal's locomotion.

7.
Res Sq ; 2024 Sep 02.
Article in English | MEDLINE | ID: mdl-39281864

ABSTRACT

Background: In individuals with chronic stroke and hemiparesis, noninvasive brain stimulation (NIBS) may be used as an adjunct to therapy for improving motor recovery. Specific states of movement during motor recovery are more responsive to brain stimulation than others, thus a system that could auto-detect movement state would be useful in correctly identifying the most effective stimulation periods. The aim of this study was to compare the performance of different machine learning models in classifying movement periods during EEG recordings of hemiparetic individuals receiving noninvasive brain stimulation. We hypothesized that transcranial direct current stimulation, a form of NIBS, would modulate brain recordings correlating with movement state and improve classification accuracies above those receiving sham stimulation. Methods: Electroencephalogram data were obtained from 10 participants with chronic stroke and 11 healthy individuals performing a motor task while undergoing transcranial direct current stimulation. Eight traditional machine learning algorithms and five ensemble methods were used to classify two movement states (a hold posture and an arm reaching movement) before, during and after stimulation. To minimize compute times, preprocessing and feature extraction were limited to z-score normalization and power binning into five frequency bands (delta through gamma). Results: Classification of disease state produced significantly higher accuracies in the stimulation (versus sham) group at 78.9% (versus 55.6%, p < 0.000002). We observed significantly higher accuracies when classifying stimulation state in the chronic stroke group (77.6%) relative to healthy controls (64.1%, p < 0.0095). In the chronic stroke cohort, classification of hold versus reach was highest during the stimulation period (75.2%) as opposed to the pre- and post-stimulation periods. Linear discriminant analysis, logistic regression, and decision tree algorithms classified movement state most accurately in participants with chronic stroke during the stimulation period (76.1%). For the ensemble methods, the highest classification accuracy for hold versus reach was achieved using low gamma frequency (30-50 Hz) as a feature (74.5%), although this result did not achieve statistical significance. Conclusions: Machine learning algorithms demonstrated sufficiently high movement state classification accuracy in participants with chronic stroke performing functional tasks during noninvasive brain stimulation. tDCS improved disease state and movement state classification in participants with chronic stroke.

8.
Front Comput Neurosci ; 16: 880742, 2022.
Article in English | MEDLINE | ID: mdl-35757231

ABSTRACT

Neurons in the brain are submerged into oscillating extracellular potential produced by synchronized synaptic currents. The dynamics of these oscillations is one of the principal characteristics of neurophysiological activity, broadly studied in basic neuroscience and used in applications. However, our interpretation of the brain waves' structure and hence our understanding of their functions depend on the mathematical and computational approaches used for data analysis. The oscillatory nature of the wave dynamics favors Fourier methods, which have dominated the field for several decades and currently constitute the only systematic approach to brain rhythms. In the following study, we outline an alternative framework for analyzing waves of local field potentials (LFPs) and discuss a set of new structures that it uncovers: a discrete set of frequency-modulated oscillatory processes-the brain wave oscillons and their transient spectral dynamics.

9.
Sci Rep ; 11(1): 16190, 2021 Aug 10.
Article in English | MEDLINE | ID: mdl-34376713

ABSTRACT

Manganese ferrite spinel has been synthesized by using low grade manganese ore and ferric oxide as sources of manganese oxide and iron oxide through solid state reaction route by taking manganese and iron mole ratio of 1:2 respectively. The impact of sintering temperature on phase composition and particle size is investigated. Similarly, the impact of frequency on dielectric constant, dielectric loss, AC (alternating current) conductivity and tangent losses is also investigated. The results shows the presence of spinel structure manganese ferrite (MnFe2O4) as the major phase for the sample sintered at 1200 °C. It has been established that the crystallite size increase with rise in sintering temperature. The surface morphology of the sample sintered at 1200 °C show pyramidal and triangular shape grains. The dielectric constant (ε') and dielectric losses (ε'') were observed to decrease with increasing the sintering temperature and frequency. Furthermore, the AC (alternating current) conductivity was found to rise with rise in applied frequency. On the other hand, the tangent losses falls considerably with rise in applied frequency.

10.
Sci Rep ; 11(1): 19239, 2021 09 28.
Article in English | MEDLINE | ID: mdl-34584109

ABSTRACT

This study presents a novel application of soft-computing through intelligent, neural networks backpropagated by Levenberg-Marquardt scheme (NNs-BLMS) to solve the mathematical model of unsteady thin film flow of magnetized Maxwell fluid with thermo-diffusion effects and chemical reaction (TFFMFTDECR) over a horizontal rotating disk. The expression for thermophoretic velocity is accounted. Energy expression is deliberated with the addition of non-uniform heat source. The PDEs of mathematical model of TFFMFTDECR are transformed to ODEs by the application of similarity transformations. A dataset is generated through Adams method for the proposed NNs-BLMS in case of various scenarios of TFFMFTDECR model by variation of rotation parameter, magnetic parameter, space dependent heat sink/source parameter, temperature dependent heat sink/source parameter and chemical reaction controlling parameter. The designed computational solver NNs-BLMS is implemented by performing training, testing and validation for the solution of TFFMFTDECR system for different variants. Variation of various physical parameters are designed via plots and explain in details. It is depicted that thin film thickness increases for higher values of disk rotation parameter, while it diminishes for higher magnetic parameter. Furthermore, higher values of Dufour number and the corresponding diminishing values of Soret number causes enhancement in fluid temperature profile. Further the effectiveness of NNs-BLMS is validated by comparing the results of the proposed solver and the standard solution of TFFMFTDECR model through error analyses, histogram representations and regression analyses.

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