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1.
Mar Drugs ; 22(2)2024 Feb 10.
Article in English | MEDLINE | ID: mdl-38393054

ABSTRACT

PLK1 is found to be highly expressed in various types of cancers, but the development of inhibitors for it has been slow. Most inhibitors are still in clinical stages, and many lack the necessary selectivity and anti-tumor effects. This study aimed to create new inhibitors for the PLK1-PBD by focusing on the PBD binding domain, which has the potential for greater selectivity. A 3D QSAR model was developed using a dataset of 112 compounds to evaluate 500 molecules. ADMET prediction was then used to select three molecules with strong drug-like characteristics. Scaffold hopping was employed to reconstruct 98 new compounds with improved drug-like properties and increased activity. Molecular docking was used to compare the efficient compound abbapolin, confirming the high-activity status of [(14S)-14-hydroxy-14-(pyridin-2-yl)tetradecyl]ammonium,[(14S)-15-(2-furyl)-14-hydroxypentadecyl]ammonium and [(14S)-14-hydroxy-14-phenyltetradecyl]ammonium. Molecular dynamics simulations and MMPBSA were conducted to evaluate the stability of the compounds in the presence of proteins. An in-depth analysis of [(14S)-15-(2-furyl)-14-hydroxypentadecyl]ammonium and [(14S)-14-hydroxy-14-phenyltetradecyl]ammonium identified them as potential candidates for PLK1 inhibitors.


Subject(s)
Ammonium Compounds , Biological Products , Molecular Docking Simulation , Molecular Dynamics Simulation , Quantitative Structure-Activity Relationship , Pharmacophore , Biological Products/pharmacology
2.
World J Microbiol Biotechnol ; 40(3): 91, 2024 Feb 12.
Article in English | MEDLINE | ID: mdl-38345638

ABSTRACT

α-Galactosidase is an important exoglycosidase belonging to the hydrolase class of enzymes, which has therapeutic and industrial potential. It plays a crucial role in hydrolyzing α-1,6 linked terminal galacto-oligosaccharide residues such as melibiose, raffinose, and branched polysaccharides such as galacto-glucomannans and galactomannans. In this study, Actinoplanes utahensis B1 was explored for α-galactosidase production, yield improvement, and activity enhancement by purification. Initially, nine media components were screened using the Plackett-Burman design (PBD). Among these components, sucrose, soya bean flour, and sodium glutamate were identified as the best-supporting nutrients for the highest enzyme secretion by A. Utahensis B1. Later, the Central Composite Design (CCD) was implemented to fine-tune the optimization of these components. Based on sequential statistical optimization methodologies, a significant, 3.64-fold increase in α-galactosidase production, from 16 to 58.37 U/mL was achieved. The enzyme was purified by ultrafiltration-I followed by multimode chromatography and ultrafiltration-II. The purity of the enzyme was confirmed by Sodium Dodecyl Sulphate-Polyacrylamide Agarose Gel Electrophoresis (SDS-PAGE) which revealed a single distinctive band with a molecular weight of approximately 72 kDa. Additionally, it was determined that this process resulted in a 2.03-fold increase in purity. The purified α-galactosidase showed an activity of 2304 U/mL with a specific activity of 288 U/mg. This study demonstrates the isolation of Actinoplanes utahensis B1 and optimization of the process for the α-galactosidase production as well as single-step purification.


Subject(s)
Actinoplanes , Oligosaccharides , alpha-Galactosidase , alpha-Galactosidase/chemistry , Molecular Weight , Hydrogen-Ion Concentration
3.
Eur Biophys J ; 52(3): 145-151, 2023 Apr.
Article in English | MEDLINE | ID: mdl-37249617

ABSTRACT

Due to misincorporation during gene replication, the accuracy of the gene expression is often compromised. This results in a mismatch or defective pair in the DNA molecule (James et al. 2016). Here, we present our study of the stability of DNA with defects in the thermal and force ensembles. We consider DNA with a different number of defects from 2to16 and study how the denaturation process differs in both ensembles. Using a statistical model, we calculate the melting point of the DNA chain in both the ensemble. Our findings display different manifestations of DNA denaturation in thermal and force ensembles. While the DNA with defects denatures at a lower temperature than the intact DNA, the point from which the DNA is pulled is important in force ensemble.


Subject(s)
DNA , Base Pairing , Nucleic Acid Conformation , DNA/genetics , Nucleic Acid Denaturation , Temperature
4.
Plant Dis ; 107(5): 1299-1309, 2023 May.
Article in English | MEDLINE | ID: mdl-36410020

ABSTRACT

Pokkah boeng disease (PBD), a sugarcane foliar disease, is caused by various Fusarium spp. within the Fusarium fujikuroi species complex (FFSC). In the current study, we investigated the diversity of Fusarium spp. associated with PBD in China. In total, 320 leaf samples displaying PBD symptoms were collected over 10 consecutive years (2012 to 2021), during winter and summer, from six various sugarcane-growing regions (Guangxi, Yunnan, Guangdong, Zhejiang, Hainan, and Fujian) in China. Phylogenetic analysis of Fusarium spp. was reconstructed using translation elongation factor 1-α, and DNA-directed RNA polymerase II largest subunit and second-largest subunit multigene sequences. Evolutionary studies of these regions categorized the isolates into four FFSC species (F. sacchari, F. proliferatum, F. verticillioides, and F. andiyazi). The identified isolates, which developed irregular necrotic patches and rotting symptoms on the sugarcane plant after approximately 30 days were tested for their pathogenicity. Symptoms that appeared during pathogenicity testing were consistent with those observed under field conditions. Each strain of the pathogenic Fusarium spp. belonged to different vegetative compatibility groups (VCGs), and there was no affinity between VCGs. Our results contribute to understanding FFSC and accurately identifying Fusarium spp. associated with the sugarcane crop.


Subject(s)
Fusarium , Saccharum , Phylogeny , Virulence/genetics , China , Edible Grain , Genetic Variation
5.
Sensors (Basel) ; 23(23)2023 Dec 03.
Article in English | MEDLINE | ID: mdl-38067962

ABSTRACT

The traditional vehicular ad hoc network (VANET), which is evolving into the internet of vehicles (IoV), has drawn great attention for its enormous potential in road safety improvement, traffic management, infotainment service support, and even autonomous driving. IEEE 802.11p, as the vital standard for wireless access in vehicular environments, has been released for more than one decade and its evolution, IEEE 802.11bd, has also been released for a few months. Since the analytical models for the IEEE 802.11p/bd medium access control (MAC) play important roles in terms of performance evaluation and MAC protocol optimization, a lot of analytical models have been proposed. However, the existing analytical models are still not accurate as a result of ignoring some important factors of the MAC itself and real communication scenarios. Motivated by this, a novel analytical model is proposed, based on a novel two-dimensional (2-D) Markov chain model. In contrast to the existing studies, all the important factors are considered in this proposed model, such as the backoff freezing mechanism, retry limit, post-backoff states, differentiated packet arrival probabilities for empty buffer queue, and queue model of packets in the buffer. In addition, the influence of the capture effect under a Nakagami-m fading channel has also been considered. Then, the expressions of successful transmission, collided transmission, normalized unsaturated throughput, and average packet delay are all meticulously derived, respectively. At last, the accuracy of the proposed analytical model is verified via the simulation results, which show that it is more accurate than the existing analytical models.

6.
Int J Mol Sci ; 24(10)2023 May 10.
Article in English | MEDLINE | ID: mdl-37239892

ABSTRACT

Ethylene Insensitive 2 (EIN2) is an integral membrane protein that regulates ethylene signaling towards plant development and immunity by release of its carboxy-terminal functional portion (EIN2C) into the nucleus. The present study elucidates that the nuclear trafficking of EIN2C is induced by importin ß1, which triggers the phloem-based defense (PBD) against aphid infestations in Arabidopsis. In plants, IMPß1 interacts with EIN2C to facilitate EIN2C trafficking into the nucleus, either by ethylene treatment or by green peach aphid infestation, to confer EIN2-dependent PBD responses, which, in turn, impede the phloem-feeding activity and massive infestation by the aphid. In Arabidopsis, moreover, constitutively expressed EIN2C can complement the impß1 mutant regarding EIN2C localization to the plant nucleus and the subsequent PBD development in the concomitant presence of IMPß1 and ethylene. As a result, the phloem-feeding activity and massive infestation by green peach aphid were highly inhibited, indicating the potential value of EIN2C in protecting plants from insect attacks.


Subject(s)
Aphids , Arabidopsis Proteins , Arabidopsis , Animals , Arabidopsis/metabolism , Arabidopsis Proteins/genetics , Arabidopsis Proteins/metabolism , Aphids/physiology , Phloem/metabolism , Ethylenes/metabolism , Gene Expression Regulation, Plant
7.
BMC Biotechnol ; 22(1): 1, 2022 01 03.
Article in English | MEDLINE | ID: mdl-34980082

ABSTRACT

BACKGROUND: SHuffle is a suitable Escherichia coli (E. coli) strain for high yield cytoplasmic soluble expression of disulfide-bonded proteins such as Insulin due to its oxidative cytoplasmic condition and the ability to correct the arrangement of disulfide bonds. Lispro is an Insulin analog that is conventionally produced in E. coli as inclusion bodies (IBs) with prolonged production time and low recovery. Here in this study, we aimed to optimize cultivation media composition for high cell density fermentation of SHuffle T7 E. coli expressing soluble Lispro proinsulin fused to SUMO tag (SU-INS construct) to obtain high cell density fermentation. RESULTS: Factors including carbon and nitrogen sources, salts, metal ions, and pH were screened via Plackett-Burman design for their effectiveness on cell dry weight (CDW) as a measure of cell growth. The most significant variables of the screening experiment were Yeast extract and MgCl2 concentration, as well as pH. Succeedingly, The Central Composite Design was utilized to further evaluate and optimize the level of significant variables. The Optimized media (OM-I) enhanced biomass by 2.3 fold in the shake flask (2.5 g/L CDW) that reached 6.45 g/L (2.6 fold increase) when applied in batch culture fermentation. The efficacy of OM-I media for soluble expression was confirmed in both shake flask and fermentor. CONCLUSION: The proposed media was suitable for high cell density fermentation of E. coli SHuffle T7 and was applicable for high yield soluble expression of Lispro proinsulin.


Subject(s)
Escherichia coli , Proinsulin , Culture Media/chemistry , Disulfides , Escherichia coli/genetics , Escherichia coli/metabolism , Fermentation , Insulin Lispro/metabolism , Proinsulin/genetics
8.
Bioorg Med Chem Lett ; 72: 128876, 2022 09 15.
Article in English | MEDLINE | ID: mdl-35788036

ABSTRACT

Pyrrolobenzodiazepine (PBD) dimers are well-known highly potent antibody drug conjugate (ADC) payloads. The corresponding PBD monomers, in contrast, have received much less attention from the ADC community. We prepared several novel polyamide-linked PBD monomers and evaluated their utility as ADC payloads. The unconjugated polyamide-PBD hybrids exhibited potent antiproliferative activity (IC50 range: 10-11-10-8 M) against a variety of HER2-expressing cancer cell lines. Several peptide-linked variants of the lead compound were prepared and conjugated to trastuzumab to afford ADCs with drug-to-antibody (DAR) ratios ranging from 3 to 5. The ADCs exhibited antigen-dependent cytotoxicity in vitro and potently suppressed tumor xenograft growth in vivo in a target-dependent manner. Moreover, the ADCs were well-tolerated in both mouse and rat. This work demonstrates for the first time that PBD polyamide hybrids can serve as effective ADC payloads.


Subject(s)
Antineoplastic Agents , Immunoconjugates , Animals , Antineoplastic Agents/pharmacology , Benzodiazepines , Cell Line, Tumor , Humans , Immunoconjugates/pharmacology , Immunoconjugates/therapeutic use , Mice , Nylons/pharmacology , Pyrroles , Rats , Xenograft Model Antitumor Assays
9.
Lett Appl Microbiol ; 75(2): 431-441, 2022 Aug.
Article in English | MEDLINE | ID: mdl-35611566

ABSTRACT

ß-cyclodextrin glucosyltransferase (ß-CGTase) is an essential enzyme to catalyse the biotransformation of starch into ß-cyclodextrins (ß-CD). ß-CD has widespread applications in the biomedical, pharmaceutical and food industries. The present study focused on ß-CGTase production using an efficient natural microbial strain and statistical production optimization for enhanced production. The isolated organism Bacillus sp. NCIM 5799 was found to be 5 µm short bacilli under FE-SEM and alkalihalophilic in nature. The ß-CGTase production was optimized using a combination of Plackett-Burman design (PBD) and Central Composite Design-Response Surface Methodology (CCD-RSM). On PBD screening Na2 CO3 , peptone and MgSO4 .7H2 O were found to be significant for optimal ß-CGTase production, whereas the soluble starch and K2 HPO4 concentrations were found to be nonsignificant for ß-CGTase production. The significant factors obtained after PBD were further optimized using CCD-RSM design. Peptone was found to have a significant interaction effect with Na2 CO3 , and MgSO4 ·7H2 O and Na2 CO3 exhibited a significant effect on the production of CGTase. The production of ß-CGTase was enhanced in the presence of peptone (3%) and Na2 CO3 (0·8%). CGTase production obtained was 156·76 U/ml when optimized using CCD-RSM. The final optimized medium (RSM) shows 7·7- and 5·4-fold high productions as compared to un-optimized and one factor at a time production media.


Subject(s)
Bacillus , beta-Cyclodextrins , Bacillus/metabolism , Glucosyltransferases/metabolism , Peptones , Starch/metabolism , beta-Cyclodextrins/metabolism
10.
J Biol Chem ; 295(16): 5321-5334, 2020 04 17.
Article in English | MEDLINE | ID: mdl-32165495

ABSTRACT

The peroxisome is a subcellular organelle that functions in essential metabolic pathways, including biosynthesis of plasmalogens, fatty acid ß-oxidation of very-long-chain fatty acids, and degradation of hydrogen peroxide. Peroxisome biogenesis disorders (PBDs) manifest as severe dysfunction in multiple organs, including the central nervous system (CNS), but the pathogenic mechanisms in PBDs are largely unknown. Because CNS integrity is coordinately established and maintained by neural cell interactions, we here investigated whether cell-cell communication is impaired and responsible for the neurological defects associated with PBDs. Results from a noncontact co-culture system consisting of primary hippocampal neurons with glial cells revealed that a peroxisome-deficient astrocytic cell line secretes increased levels of brain-derived neurotrophic factor (BDNF), resulting in axonal branching of the neurons. Of note, the BDNF expression in astrocytes was not affected by defects in plasmalogen biosynthesis and peroxisomal fatty acid ß-oxidation in the astrocytes. Instead, we found that cytosolic reductive states caused by a mislocalized catalase in the peroxisome-deficient cells induce the elevation in BDNF secretion. Our results suggest that peroxisome deficiency dysregulates neuronal axogenesis by causing a cytosolic reductive state in astrocytes. We conclude that astrocytic peroxisomes regulate BDNF expression and thereby support neuronal integrity and function.


Subject(s)
Astrocytes/metabolism , Brain-Derived Neurotrophic Factor/metabolism , Neurons/metabolism , Peroxisomal Disorders/metabolism , Peroxisomes/metabolism , Animals , CHO Cells , Cell Line , Cell Line, Tumor , Cells, Cultured , Cricetinae , Cricetulus , Cytosol/metabolism , Fatty Acids/metabolism , Hippocampus/cytology , Humans , Oxidation-Reduction , Plasmalogens/metabolism , Rats , Rats, Wistar , Up-Regulation
11.
Mol Pharm ; 17(1): 50-58, 2020 01 06.
Article in English | MEDLINE | ID: mdl-31742408

ABSTRACT

DNA-targeting indolinobenzodiazepine dimer (IGN) payloads are used in several clinical-stage antibody-drug conjugates. IGN drugs alkylate DNA through the single imine moiety present in the dimer in contrast to the pyrrolobenzodiazepine dimer drugs, such as talirine and tesirine, which contain two imine moieties per dimer and cross-link DNA. This study explored the mechanism of binding of IGN to DNA in cells and to synthetic duplex and hairpin oligonucleotides. New, highly sensitive IGN-DNA binding enzyme-linked immunosorbent assay methods were developed using biotinylated IGN analogues (monoimine, diimine, and diamine IGNs) and digoxigenin-labeled duplex oligonucleotides, which allowed the measurement of drug-DNA adducts in viable cells at concentrations below IC50. Furthermore, the release of free drug from the IGN-DNA adduct upon treatment with nuclease ex vivo was tested under physiological conditions. The monoimine IGN drug formed a highly stable adduct with DNA in cells, with stability similar to that of the diimine drug analogue. Both monoimine and diimine IGN-DNA adducts released free drugs upon DNA cleavage by nuclease at 37 °C, although more free drug was released from the monoimine compared to the diimine adduct, which presumably was partly cross-linked. The strong binding of the monoimine IGN drug to duplex DNA results from both the noncovalent IGN-DNA interaction and the covalent bond formation between the 2-amino group of a guanine residue and the imine moiety in IGN.


Subject(s)
Antineoplastic Agents/chemistry , Benzodiazepines/chemistry , DNA Adducts/chemistry , DNA/chemistry , Immunoconjugates/pharmacology , Indoles/chemistry , Antineoplastic Agents/administration & dosage , Antineoplastic Agents/pharmacology , Cell Line, Tumor , DNA Adducts/metabolism , Dimerization , Enzyme-Linked Immunospot Assay , Humans , Imines/chemistry , Immunoconjugates/administration & dosage , Oligonucleotides/chemistry , Pyrroles/chemistry
12.
Adv Exp Med Biol ; 1299: 71-80, 2020.
Article in English | MEDLINE | ID: mdl-33417208

ABSTRACT

Zellweger syndrome disorders (ZSD) is the principal group of peroxisomal disorders characterized by a defect of peroxisome biogenesis due to mutations in one of the 13 PEX genes. The clinical spectrum is very large with a continuum from antenatal forms to adult presentation. Whereas biochemical profile in body fluids is classically used for their diagnosis, the revolution of high-throughput sequencing has extended the knowledge about these disorders. The aim of this review is to offer a large panorama on molecular basis, clinical presentation and treatment of ZSD, and to update the diagnosis strategy of these disorders in the era of next-generation sequencing (NGS).


Subject(s)
Infant, Newborn, Diseases , Zellweger Syndrome , Adult , High-Throughput Nucleotide Sequencing , Humans , Infant, Newborn , Infant, Newborn, Diseases/diagnosis , Infant, Newborn, Diseases/genetics , Infant, Newborn, Diseases/pathology , Mutation , Peroxisomes/metabolism , Peroxisomes/pathology , Zellweger Syndrome/diagnosis , Zellweger Syndrome/genetics , Zellweger Syndrome/pathology
13.
Sensors (Basel) ; 20(21)2020 Nov 04.
Article in English | MEDLINE | ID: mdl-33158047

ABSTRACT

The obscuration thresholds for various smoke detectors and combustibles, required as an input parameter in fire simulation, were measured to predict the accurate activation time of detectors. One ionization detector and nine photoelectric detectors were selected. A fire detector evaluator, which can uniformly control the velocity and smoke concentration, was utilized. Filter paper, liquid fuels, and polymer pellets were employed as smoke-generation combustibles. The nominal obscuration thresholds of the considered detectors were 15 %/m, but the ionization detectors activated at approximately 40 %/m and 16 %/m, respectively, on applying filter paper and kerosene. In contrast, the reverse obscuration thresholds were found quantitatively according to the combustibles in the photoelectric detector. This phenomenon was caused by differences in the color of the smoke particles according to the combustibles, which is explained by single-scattering albedo (ratio of light scattering to light extinction). The obscuration thresholds for liquid fuels (kerosene, heptane and toluene) as well as fire types of polymer plastic pellets were also measured for several photoelectric detectors. A database of obscuration thresholds was thereby established according to the detector and combustible types, and it is expected to provide useful information for predicting more accurate detector activation time and required safe egress time (REST).

14.
Molecules ; 25(5)2020 Mar 10.
Article in English | MEDLINE | ID: mdl-32164166

ABSTRACT

Here we sought to evaluate the contribution of the PBD unit to the biological activity of PBD-conjugates and, to this end, an adenosine nucleoside was attached to the PBD A-ring C8 position. A convergent approach was successfully adopted for the synthesis of a novel C8-linked pyrrolo(2,1-c)(1,4)benzodiazepine(PBD)-adenosine(ADN) hybrid. The PBD and adenosine (ADN) moieties were synthesized separately and then linked through a pentynyl linker. To our knowledge, this is the first report of a PBD connected to a nucleoside. Surprisingly, the compound showed no cytotoxicity against murine cells and was inactive against Mycobacterium aurum and M. bovis strains and did not bind to guanine-containing DNA sequences, as shown by DNase I footprinting experiments. Molecular dynamics simulations revealed that the PBD-ADN conjugate was poorly accommodated in the DNA minor groove of two DNA sequences containing the AGA-PBD binding motif, with the adenosine moiety of the ligand preventing the covalent binding of the PBD unit to the guanine amino group of the DNA duplex. These interesting findings shed further light on the ability of the substituents attached at the C8 position of PBDs to affect and modulate the biological and biophysical properties of PBD hybrids.


Subject(s)
Adenosine/chemistry , Dioxins/chemistry , Animals , Base Sequence , Cell Line , DNA/chemistry , Guanine/chemistry , Ligands , Mice , Molecular Dynamics Simulation
15.
Invest New Drugs ; 37(2): 297-306, 2019 04.
Article in English | MEDLINE | ID: mdl-30132271

ABSTRACT

Purpose This first-in-human study evaluated SGN-CD70A, an antibody-drug conjugate (ADC) directed against the integral plasma membrane protein CD70 and linked to a pyrrolobenzodiazepine (PBD) dimer, in patients with relapsed or refractory (R/R) CD70-positive non-Hodgkin lymphoma (NHL) including diffuse large B cell lymphoma (DLBCL), mantle cell lymphoma (MCL), and Grade 3b follicular lymphoma (FL3b). Methods SGN-CD70A was administered intravenously on Day 1 of 3-week cycles beginning at 8 mcg/kg with planned dose escalation to 200 mcg/kg. Due to observations of prolonged thrombocytopenia, the study was amended to dose every 6 weeks (q6wk). Results Twenty patients were enrolled and treated with SGN-CD70A. The maximum tolerated dose of SGN-CD70A was 30 mcg/kg q6wk. The most common adverse events (AEs) reported were thrombocytopenia (75%), nausea (55%), anemia (50%), and fatigue (50%). The onset for treatment-related thrombocytopenia typically occurred during Cycle 1. Most of the treatment-related events of thrombocytopenia were ≥ Grade 3. Antitumor activity in patients included 1 complete remission (CR) and 3 partial remissions (PRs), 2 of which were ongoing for at least 42.9 weeks. SGN-CD70A exposures were approximately dose proportional, with a mean terminal half-life of 3 to 5 days. Conclusions While modest single-agent activity was observed in heavily pretreated NHL patients, the applicability of SGN-CD70A is limited by the frequency and severity of thrombocytopenia, despite the long-term response with limited drug exposure.


Subject(s)
Antibodies, Monoclonal/therapeutic use , CD27 Ligand/antagonists & inhibitors , Gene Expression Regulation, Neoplastic/drug effects , Lymphoma, B-Cell/drug therapy , Lymphoma, Mantle-Cell/drug therapy , Neoplasm Recurrence, Local/drug therapy , Salvage Therapy , Adult , Aged , Aged, 80 and over , Antibodies, Monoclonal/pharmacokinetics , Benzodiazepines/chemistry , Biomarkers, Tumor/metabolism , CD27 Ligand/immunology , CD27 Ligand/metabolism , Drug Resistance, Neoplasm/drug effects , Female , Follow-Up Studies , Humans , Immunoconjugates/pharmacokinetics , Immunoconjugates/therapeutic use , Lymphoma, B-Cell/immunology , Lymphoma, B-Cell/metabolism , Lymphoma, B-Cell/pathology , Lymphoma, Large B-Cell, Diffuse/drug therapy , Lymphoma, Large B-Cell, Diffuse/immunology , Lymphoma, Large B-Cell, Diffuse/metabolism , Lymphoma, Large B-Cell, Diffuse/pathology , Lymphoma, Mantle-Cell/immunology , Lymphoma, Mantle-Cell/metabolism , Lymphoma, Mantle-Cell/pathology , Male , Maximum Tolerated Dose , Middle Aged , Neoplasm Recurrence, Local/immunology , Neoplasm Recurrence, Local/metabolism , Neoplasm Recurrence, Local/pathology , Prognosis , Pyrroles/chemistry , Tissue Distribution
16.
Bioorg Chem ; 91: 103148, 2019 10.
Article in English | MEDLINE | ID: mdl-31376784

ABSTRACT

A series of new peptidomimetics targeting the polo-box domain (PBD) of polo-like kinase 1 (Plk1) was identified based on the potent and selective pentapeptide Plk1 PBD inhibitor PLHSpT. Unnatural amino acid residues were introduced to the newly designed compound and the N-terminal substituent of the peptidomimetic was investigated. The optimized compound 9 inhibited the Plk1 PBD with IC50 of 0.267 µM and showed almost no inhibition to Plk2 PBD or Plk3 PBD at 100 µM. Biolayer interferometry studies demonstrated that compound 9 showed potent binding affinity to Plk1 with a Kd value of 0.164 µM, while no Kd were detected against Plk2 and Plk3. Compound 9 showed improved stability in rat plasma compared to PLHSpT. Binding mode analysis was performed and in agreement with the observed experimental results. There are only two natural amino acids remained in the chemical structure of 9. This study may provide new information for further research on Plk1 PBD inhibitors.


Subject(s)
Cell Cycle Proteins/antagonists & inhibitors , Peptidomimetics/pharmacology , Plasma/chemistry , Protein Kinase Inhibitors/pharmacology , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Animals , Peptidomimetics/chemistry , Protein Binding , Protein Domains , Protein Kinase Inhibitors/chemistry , Rats , Polo-Like Kinase 1
17.
Int J Mol Sci ; 20(5)2019 Mar 05.
Article in English | MEDLINE | ID: mdl-30841523

ABSTRACT

Since the discovery of the human epidermal growth factor receptor 2 (HER2) as an oncogenic driver in a subset of breast cancers and the development of HER2 directed therapies, the prognosis of HER2 amplified breast cancers has improved meaningfully. Next to monoclonal anti-HER2 antibodies and tyrosine kinase inhibitors, the antibody-drug conjugate T-DM1 is a pillar of targeted treatment of advanced HER2-positive breast cancers. Currently, several HER2 directed antibody-drug conjugates are under clinical investigation for HER2 amplified but also HER2 expressing but not amplified breast tumors. In this article, we review the current preclinical and clinical evidence of the investigational drugs A166, ALT-P7, ARX788, DHES0815A, DS-8201a, RC48, SYD985, MEDI4276 and XMT-1522.


Subject(s)
Antineoplastic Agents, Immunological/therapeutic use , Breast Neoplasms/drug therapy , Maytansine/analogs & derivatives , Protein Kinase Inhibitors/therapeutic use , Receptor, ErbB-2/metabolism , Trastuzumab/therapeutic use , Ado-Trastuzumab Emtansine , Clinical Trials as Topic , Female , Humans , Maytansine/therapeutic use
18.
Hum Brain Mapp ; 39(12): 4707-4723, 2018 12.
Article in English | MEDLINE | ID: mdl-30096212

ABSTRACT

Psychotic bipolar disorder (P-BD) is a specific subset that presents greater risk of relapse and worse outcomes than nonpsychotic bipolar disorder (NP-BD). To explore the neuroanatomical bases of psychotic dimension in bipolar disorder (BD), a systematic review was carried out based on the gray matter volume (GMV) among P-BD and NP-BD patients and healthy controls (HC). Further, we conducted a meta-analysis of GMV differences between P-BD patients and HC using a whole-brain imaging approach. Our review revealed that P-BD patients exhibited smaller GMVs mainly in the prefronto-temporal and cingulate cortices, the precentral gyrus, and insula relative to HC both qualitatively and quantitatively. Qualitatively the comparison between P-BD and NP-BD patients suggested inconsistent GMV alterations mainly involving the prefrontal cortex, while NP-BD patients showed GMV deficits in local regions compared with HC. The higher proportions of female patients and patients taking psychotropic medication in P-BD and P-BD type I were associated with smaller GMV in the right precentral gyrus, and the right insula, respectively. In conclusions, psychosis in BD might be associated with specific cortical GMV deficits. Gender and psychotropic medication might have effects on the regional GMVs in P-BD patients. It is necessary to distinguish psychotic dimension in neuroimaging studies of BD.


Subject(s)
Affective Disorders, Psychotic/pathology , Bipolar Disorder/pathology , Gray Matter/pathology , Neuroimaging , Adult , Affective Disorders, Psychotic/diagnostic imaging , Affective Disorders, Psychotic/physiopathology , Bipolar Disorder/diagnostic imaging , Bipolar Disorder/physiopathology , Gray Matter/diagnostic imaging , Humans , Neuroimaging/methods , Neuroimaging/statistics & numerical data
19.
Genet Med ; 20(10): 1274-1283, 2018 10.
Article in English | MEDLINE | ID: mdl-29419819

ABSTRACT

PURPOSE: Peroxisome biogenesis disorders-Zellweger spectrum disorders (PBD-ZSD) are metabolic diseases with multisystem manifestations. Individuals with PBD-ZSD exhibit impaired peroxisomal biochemical functions and have abnormal levels of peroxisomal metabolites, but the broader metabolic impact of peroxisomal dysfunction and the utility of metabolomic methods is unknown. METHODS: We studied 19 individuals with clinically and molecularly characterized PBD-ZSD. We performed both quantitative peroxisomal biochemical diagnostic studies in parallel with untargeted small molecule metabolomic profiling in plasma samples with detection of >650 named compounds. RESULTS: The cohort represented intermediate to mild PBD-ZSD subjects with peroxisomal biochemical alterations on targeted analysis. Untargeted metabolomic profiling of these samples revealed elevations in pipecolic acid and long-chain lysophosphatidylcholines, as well as an unanticipated reduction in multiple sphingomyelin species. These sphingomyelin reductions observed were consistent across the PBD-ZSD samples and were rare in a population of >1,000 clinical samples. Interestingly, the pattern or "PBD-ZSD metabolome" was more pronounced in younger subjects suggesting studies earlier in life reveal larger biochemical changes. CONCLUSION: Untargeted metabolomics is effective in detecting mild to intermediate cases of PBD-ZSD. Surprisingly, dramatic reductions in plasma sphingomyelin are a consistent feature of the PBD-ZSD metabolome. The use of metabolomics in PBD-ZSD can provide insight into novel biomarkers of disease.


Subject(s)
Biomarkers/blood , Lysosomal Storage Diseases/blood , Peroxisomal Disorders/blood , Zellweger Syndrome/blood , Adolescent , Adult , Child, Preschool , Cohort Studies , Female , Humans , Lysosomal Storage Diseases/genetics , Lysosomal Storage Diseases/pathology , Male , Membrane Proteins , Metabolomics/methods , Peroxisomal Disorders/pathology , Sphingomyelins/blood , Young Adult , Zellweger Syndrome/genetics , Zellweger Syndrome/pathology
20.
Bioorg Med Chem ; 26(12): 3429-3437, 2018 07 23.
Article in English | MEDLINE | ID: mdl-29807699

ABSTRACT

Polo-like kinase 1 (Plk1) is an anti-cancer target due to its critical role in mitotic progression. A growing body of evidence has documented that Peptide-Plk1 inhibitors showed high Plk1 binding affinity. However, phosphopeptides-Plk1 inhibitors showed poor cell membranes permeability, which limits their clinical applications. In current study, nine candidate phosphopeptides consisting of non-natural amino acids were rationally designed and then successfully synthesized using an Fmoc-solid phase peptide synthesis (SPPS) strategy. Moreover, the binding affinities and selectivity were evaluated via fluorescence polarization (FP) assay. The results confirmed that the most promising phosphopeptide 6 bound to Plk1 PBD with the IC50 of 38.99 nM, which was approximately 600-fold selectivity over Plk3 PBD (IC50 = 25.44 µM) and nearly no binding to Plk2 PBD. Furthermore the intracellular activities and the cell membrane permeability of phosphopeptide 6 were evalutated. Phosphopeptide 6 demonstrated appropriate cell membrane permeability and arrested HeLa cells cycle in G2/M phase by regulating CyclinB1-CDK1. Further, phosphopeptide 6 showed typical apoptotic morphology and induced caspase-dependent apoptosis. In conclusion, we expect our discovery can provide new insights into the further optimization of Plk1 PBD inhibitors.


Subject(s)
Cell Cycle Proteins/antagonists & inhibitors , Drug Design , Phosphopeptides/chemistry , Protein Kinase Inhibitors/chemical synthesis , Protein Serine-Threonine Kinases/antagonists & inhibitors , Proto-Oncogene Proteins/antagonists & inhibitors , Amino Acid Sequence , Apoptosis/drug effects , Caspase 3/metabolism , Cell Cycle Proteins/metabolism , Cell Membrane Permeability/drug effects , G2 Phase Cell Cycle Checkpoints/drug effects , HeLa Cells , Humans , Phosphopeptides/metabolism , Phosphopeptides/pharmacology , Protein Binding , Protein Domains , Protein Kinase Inhibitors/metabolism , Protein Kinase Inhibitors/pharmacology , Protein Serine-Threonine Kinases/chemistry , Protein Serine-Threonine Kinases/metabolism , Proto-Oncogene Proteins/metabolism , Tumor Suppressor Proteins , Polo-Like Kinase 1
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