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1.
Eur J Immunol ; 52(3): 447-461, 2022 03.
Article in English | MEDLINE | ID: mdl-34935145

ABSTRACT

Effective function of CD8+ T cells and enhanced innate activation of DCs in response to HIV-1 is linked to protective antiviral immunity in controllers. Manipulation of DC targeting the master regulator TANK-binding Kinase 1 (TBK1) might be useful to acquire controller-like properties. Here, we evaluated the impact of the combination of 2´3´-c´diAM(PS)2 and Poly I:C as potential adjuvants capable of potentiating DC´s abilities to induce polyfunctional HIV-1 specific CD8+ T-cell responses in vitro and in vivo using a humanized BLT mouse model. Adjuvant combination enhanced TBK-1 phosphorylation and IL-12 and IFN-ß expression on DC and increased their ability to activate polyfunctional HIV-1-specific CD8+ T cells in vitro. Moreover, higher proportions of hBLT mice vaccinated with ADJ-DC exhibited less severe CD4+ T-cell depletion following HIV-1 infection compared to control groups. This was associated with infiltration of CD8+ T cells in the white pulp from the spleen, reduced spread of infected p24+ cells to LN, and with preserved abilities of CD8+ T cells from the spleen and blood of vaccinated animals to induce specific polyfunctional responses upon antigen stimulation. Therefore, priming of DC with PolyI:C and STING agonists might be useful for future HIV-1 vaccine studies.


Subject(s)
AIDS Vaccines , HIV-1 , AIDS Vaccines/metabolism , Adjuvants, Immunologic/pharmacology , Animals , CD4-Positive T-Lymphocytes , CD8-Positive T-Lymphocytes , Dendritic Cells , HIV Core Protein p24/metabolism , Lymphoid Tissue , Mice , Poly I-C/pharmacology
2.
PLoS Pathog ; 15(9): e1008011, 2019 09.
Article in English | MEDLINE | ID: mdl-31498845

ABSTRACT

Identification and characterization of CD8+ and CD4+ T-cell epitopes elicited by HIV therapeutic vaccination is key for elucidating the nature of protective cellular responses and mechanism of the immune evasion of HIV. Here, we report the characterization of HIV-specific T-cell responses in cART (combination antiretroviral therapy) treated HIV-1 infected patients after vaccination with ex vivo-generated IFNα Dendritic Cells (DCs) loaded with LIPO-5 (HIV-1 Nef 66-97, Nef 116-145, Gag 17-35, Gag 253-284 and Pol 325-355 lipopeptides). Vaccination induced and/or expanded HIV-specific CD8+ T cells producing IFNγ, perforin, granzyme A and granzyme B, and also CD4+ T cells secreting IFNγ, IL-2 and IL-13. These responses were directed against dominant and subdominant epitopes representing all vaccine regions; Gag, Pol and Nef. Interestingly, IL-2 and IL-13 produced by CD4+ T cells were negatively correlated with the peak of viral replication following analytic treatment interruption (ATI). Epitope mapping confirmed that vaccination elicited responses against predicted T-cell epitopes, but also allowed to identify a set of 8 new HIV-1 HLA-DR-restricted CD4+ T-cell epitopes. These results may help to better design future DC therapeutic vaccines and underscore the role of vaccine-elicited CD4+ T-cell responses to achieve control of HIV replication.


Subject(s)
AIDS Vaccines/immunology , Epitopes, T-Lymphocyte/immunology , AIDS Vaccines/metabolism , Adult , Anti-Retroviral Agents , Antiviral Agents/pharmacology , CD4-Positive T-Lymphocytes/immunology , CD8-Positive T-Lymphocytes/immunology , Dendritic Cells/immunology , Drug Therapy, Combination/methods , Epitopes/immunology , Female , HIV Infections/immunology , HIV-1/immunology , HIV-1/pathogenicity , Humans , Interferon-alpha/metabolism , Interferon-alpha/pharmacology , Male , Middle Aged , Vaccination
3.
PLoS Biol ; 16(8): e2005817, 2018 08.
Article in English | MEDLINE | ID: mdl-30157178

ABSTRACT

Over the last decade, multiple broadly neutralizing monoclonal antibodies (bN-mAbs) to the HIV-1 envelope protein (Env) gp120 have been described. Many of these recognize epitopes consisting of both amino acid and glycan residues. Moreover, the glycans required for binding of these bN-mAbs are early intermediates in the N-linked glycosylation pathway. This type of glycosylation substantially alters the mass and net charge of Envs compared to molecules with the same amino acid sequence but possessing mature, complex (sialic acid-containing) carbohydrates. Since cell lines suitable for biopharmaceutical production that limit N-linked glycosylation to mannose-5 (Man5) or earlier intermediates are not readily available, the production of vaccine immunogens displaying these glycan-dependent epitopes has been challenging. Here, we report the development of a stable suspension-adapted Chinese hamster ovary (CHO) cell line that limits glycosylation to Man5 and earlier intermediates. This cell line was created using the clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (Cas9) gene editing system and contains a mutation that inactivates the gene encoding Mannosyl (Alpha-1,3-)-Glycoprotein Beta-1,2-N-Acetylglucosaminyltransferase (MGAT1). Monomeric gp120s produced in the MGAT1- CHO cell line exhibit improved binding to prototypic glycan-dependent bN-mAbs directed to the V1/V2 domain (e.g., PG9) and the V3 stem (e.g., PGT128 and 10-1074) while preserving the structure of the important glycan-independent epitopes (e.g., VRC01). The ability of the MGAT1- CHO cell line to limit glycosylation to early intermediates in the N-linked glycosylation pathway without impairing the doubling time or ability to grow at high cell densities suggests that it will be a useful substrate for the biopharmaceutical production of HIV-1 vaccine immunogens.


Subject(s)
AIDS Vaccines/metabolism , CHO Cells/physiology , Gene Editing/methods , Amino Acid Sequence , Animals , Antibodies, Neutralizing/metabolism , CRISPR-Cas Systems/genetics , Clustered Regularly Interspaced Short Palindromic Repeats , Cricetinae , Cricetulus , Epitopes , Glycosylation , HIV Envelope Protein gp120/metabolism , HIV Envelope Protein gp120/physiology , HIV Seropositivity , HIV-1/genetics , Humans , N-Acetylglucosaminyltransferases/genetics , N-Acetylglucosaminyltransferases/physiology , Polysaccharides/metabolism , Protein Engineering/methods
4.
PLoS Pathog ; 14(2): e1006913, 2018 02.
Article in English | MEDLINE | ID: mdl-29474444

ABSTRACT

The native-like, soluble SOSIP.664 trimer based on the BG505 clade A env gene of HIV-1 is immunogenic in various animal species, of which the most studied are rabbits and rhesus macaques. The trimer induces autologous neutralizing antibodies (NAbs) consistently but at a wide range of titers and with incompletely determined specificities. A precise delineation of immunogenic neutralization epitopes on native-like trimers could help strategies to extend the NAb response to heterologous HIV-1 strains. One autologous NAb epitope on the BG505 Env trimer is known to involve residues lining a hole in the glycan shield that is blocked by adding a glycan at either residue 241 or 289. This glycan-hole epitope accounts for the NAb response of most trimer-immunized rabbits but not for that of a substantial subset. Here, we have used a large panel of mutant BG505 Env-pseudotyped viruses to define additional sites. A frequently immunogenic epitope in rabbits is blocked by adding a glycan at residue 465 near the junction of the gp120 V5 loop and ß24 strand and is influenced by amino-acid changes in the structurally nearby C3 region. We name this new site the "C3/465 epitope". Of note is that the C3 region was under selection pressure in the infected infant from whom the BG505 virus was isolated. A third NAb epitope is located in the V1 region of gp120, although it is rarely immunogenic. In macaques, NAb responses induced by BG505 SOSIP trimers are more often directed at the C3/465 epitope than the 241/289-glycan hole.


Subject(s)
Antibodies, Neutralizing/immunology , Epitopes/analysis , HIV Antibodies/chemistry , HIV Antibodies/immunology , HIV-1/immunology , env Gene Products, Human Immunodeficiency Virus/immunology , AIDS Vaccines/immunology , AIDS Vaccines/metabolism , Animals , Antibodies, Neutralizing/metabolism , Antibody Formation , Epitopes/immunology , Female , HIV Infections/immunology , HIV Infections/therapy , Macaca mulatta , Protein Multimerization , Rabbits , env Gene Products, Human Immunodeficiency Virus/chemistry
5.
PLoS Pathog ; 14(8): e1007278, 2018 08.
Article in English | MEDLINE | ID: mdl-30153309

ABSTRACT

The GI tract is preferentially targeted during acute/early HIV-1 infection. Consequent damage to the gut plays a central role in HIV pathogenesis. The basis for preferential targeting of gut tissues is not well defined. Recombinant proteins and synthetic peptides derived from HIV and SIV gp120 bind directly to integrin α4ß7, a gut-homing receptor. Using both cell-surface expressed α4ß7 and a soluble α4ß7 heterodimer we demonstrate that its specific affinity for gp120 is similar to its affinity for MAdCAM (its natural ligand). The gp120 V2 domain preferentially engages extended forms of α4ß7 in a cation -sensitive manner and is inhibited by soluble MAdCAM. Thus, V2 mimics MAdCAM in the way that it binds to α4ß7, providing HIV a potential mechanism to discriminate between functionally distinct subsets of lymphocytes, including those with gut-homing potential. Furthermore, α4ß7 antagonists developed for the treatment of inflammatory bowel diseases, block V2 binding to α4ß7. A 15-amino acid V2 -derived peptide is sufficient to mediate binding to α4ß7. It includes the canonical LDV/I α4ß7 binding site, a cryptic epitope that lies 7-9 amino acids amino terminal to the LDV/I, and residues K169 and I181. These two residues were identified in a sieve analysis of the RV144 vaccine trial as sites of vaccine -mediated immune pressure. HIV and SIV V2 mAbs elicited by both vaccination and infection that recognize this peptide block V2-α4ß7 interactions. These mAbs recognize conformations absent from the ß- barrel presented in a stabilized HIV SOSIP gp120/41 trimer. The mimicry of MAdCAM-α4ß7 interactions by V2 may influence early events in HIV infection, particularly the rapid seeding of gut tissues, and supports the view that HIV replication in gut tissue is a central feature of HIV pathogenesis.


Subject(s)
HIV Envelope Protein gp120/chemistry , HIV Envelope Protein gp120/immunology , HIV Envelope Protein gp120/metabolism , HIV Infections/prevention & control , Integrins/metabolism , Simian Acquired Immunodeficiency Syndrome/prevention & control , AIDS Vaccines/chemistry , AIDS Vaccines/immunology , AIDS Vaccines/metabolism , Animals , Antibodies, Monoclonal , Binding Sites/immunology , Cell Line, Tumor , Epitopes/chemistry , Epitopes/immunology , HIV Antibodies/chemistry , HIV Antibodies/immunology , HIV Antibodies/metabolism , HIV Infections/immunology , HIV-1/immunology , Macaca , Protein Binding , Protein Interaction Domains and Motifs/immunology , SAIDS Vaccines/chemistry , SAIDS Vaccines/immunology , SAIDS Vaccines/metabolism , Simian Acquired Immunodeficiency Syndrome/immunology , Simian Immunodeficiency Virus/immunology , Vaccination/methods
6.
Cytometry A ; 95(7): 722-725, 2019 07.
Article in English | MEDLINE | ID: mdl-30919583

ABSTRACT

A 26-color staining panel was developed to profile human antigen-specific T cells in an intracellular cytokine staining (ICS) assay using peptide pools to various antigens of interest. In addition to multiple functional markers, the panel includes differentiation/activation markers and markers to assess γδ, mucosal-associated invariant T, and NK T cells as well as conventional NK cells. Panel optimization was performed using previously cryopreserved PBMC from healthy adults, and then, expression of key functional markers in the panel was cross-validated against a validated ICS assay used in the HIV Vaccine Trials Network (HVTN). The panel is currently being used to evaluate the responses to tuberculosis and malaria vaccine candidates in volunteers from different geographic areas. © 2019 The Authors. Cytometry Part A published by Wiley Periodicals, Inc. on behalf of International Society for Advancement of Cytometry.


Subject(s)
Flow Cytometry/methods , Killer Cells, Natural/immunology , Natural Killer T-Cells/immunology , T-Lymphocytes/immunology , AIDS Vaccines/immunology , AIDS Vaccines/metabolism , Adult , Antigens/metabolism , Cytokines/metabolism , Fluorescent Dyes/chemistry , Humans , Immunologic Memory , Killer Cells, Natural/cytology , Killer Cells, Natural/metabolism , Leukocytes, Mononuclear/metabolism , Malaria Vaccines/immunology , Malaria Vaccines/metabolism , Natural Killer T-Cells/cytology , Natural Killer T-Cells/metabolism , T-Lymphocytes/cytology , T-Lymphocytes/metabolism , Tuberculosis/immunology , Tuberculosis/metabolism
7.
J Biol Chem ; 292(20): 8236-8243, 2017 05 19.
Article in English | MEDLINE | ID: mdl-28283570

ABSTRACT

Designing an effective HIV-1 envelope glycoprotein (Env) immunogen for elicitation of broadly neutralizing antibodies (bNAbs) is a challenging task because of the high sequence diversity, heavy glycosylation, and inherent meta-stability of Env. Based on the antigenic profile of recently isolated bNAbs, the rational approach to immunogen design is to make a stable version of the Env trimer, which mimics the native trimeric Env present on the viral surface. The SOSIP.664 form of a clade A Env, BG505, yields a homogeneous and well ordered prefusion trimeric form, which maintains structural integrity and desired antigenicity. Following the same approach, we attempted to stabilize a naturally occurring efficiently cleaved clade C Env, namely 4-2.J41, isolated from an Indian patient. Although the SOSIP form of 4-2.J41 failed to produce reasonably well ordered trimers, the 4-2.J41.SOSIP.664 Env could be stabilized in a native-like trimeric form by swapping a domain from BG505 Env to 4-2.J41 Env. Using various biochemical and biophysical means we confirmed that this engineered Env is cleaved, trimeric, and it retains its native-like quaternary conformation exposing mostly broadly neutralizing epitopes. Moreover, introduction of a disulfide bond in the bridging sheet region further stabilized the closed conformation of the Env. Thus, our 4-2.J41.SOSIP.664 Env adds to the increasing pool of potential immunogens for a HIV-1 vaccine, particularly for clade C, which is the most prevalent in India and many other countries. Besides, the approach used to stabilize the 4-2.J41 Env may be used successfully with Envs from other HIV-1 strains as well. Additionally, a soluble native trimeric form of an efficiently cleaved membrane-bound Env, 4-2.J41, may be beneficial for immunization studies using various prime-boost strategies.


Subject(s)
HIV-1/metabolism , env Gene Products, Human Immunodeficiency Virus/metabolism , AIDS Vaccines/genetics , AIDS Vaccines/immunology , AIDS Vaccines/metabolism , Cell Line , HIV-1/genetics , HIV-1/immunology , Humans , Protein Domains , Recombinant Proteins/genetics , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , env Gene Products, Human Immunodeficiency Virus/genetics , env Gene Products, Human Immunodeficiency Virus/immunology
8.
J Gen Virol ; 98(3): 496-505, 2017 Mar.
Article in English | MEDLINE | ID: mdl-28056224

ABSTRACT

We have previously established that mucosal uptake of recombinant fowlpox virus (rFPV) vaccines is far superior to other vector-based vaccines. Specifically, intranasal priming with rFPV vaccines can recruit unique antigen-presenting cells, which induce excellent mucosal and systemic HIV-specific CD8+ T-cell immunity. In this study, we have for the first time investigated the in vivo dissemination, safety and expression kinetics of rFPV post intranasal delivery using recombinant viruses expressing green fluorescent protein or mCherry. Both confocal microscopy of tissue sections using green fluorescent protein and in vivo Imaging System (IVIS) spectrum live animal and whole organ imaging studies using mCherry revealed that (i) the peak antigen expression occurs 12 to 24 h post vaccination and no active viral gene expression is detected 96 h post vaccination. (ii) The virus only infects the initial vaccination site (lung and nasal cavity) and does not disseminate to distal sites such as the spleen or gut. (iii) More importantly, rFPV does not cross the olfactory receptor neuron pathway. Collectively, our findings indicate that rFPV vector-based vaccines have all the hallmarks of a safe and effective mucosal delivery vector, suitable for clinical evaluation.


Subject(s)
AIDS Vaccines/administration & dosage , AIDS Vaccines/adverse effects , Fowlpox virus , HIV Antigens/administration & dosage , HIV Antigens/adverse effects , Vaccines, Synthetic/adverse effects , AIDS Vaccines/metabolism , Administration, Intranasal , Animals , Gastrointestinal Tract/metabolism , Genetic Vectors/administration & dosage , Genetic Vectors/adverse effects , Green Fluorescent Proteins/analysis , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , HIV Antigens/metabolism , Luminescent Proteins/analysis , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Lung/metabolism , Mice , Mice, Inbred BALB C , Molecular Imaging , Nasal Mucosa/metabolism , Spleen/metabolism , Vaccination , Vaccines, Synthetic/administration & dosage , Vaccines, Synthetic/immunology , Vaccines, Synthetic/metabolism , Red Fluorescent Protein
9.
PLoS Pathog ; 11(1): e1004570, 2015 Jan.
Article in English | MEDLINE | ID: mdl-25569572

ABSTRACT

The structure of BG505 gp140 SOSIP, a soluble mimic of the native HIV-1 envelope glycoprotein (Env), marks the beginning of new era in Env structure-based immunogen design. Displaying a well-ordered quaternary structure, these subtype A-derived trimers display an excellent antigenic profile, discriminating recognition by broadly neutralizing antibodies (bNAbs) from non-broadly neutralizing antibodies (non-bNAbs), and provide a solid Env-based immunogenic platform starting point. Even with this important advance, obtaining homogeneous well-ordered soluble SOSIP trimers derived from other subtypes remains challenging. Here, we report the "rescue" of homogeneous well-ordered subtype B and C SOSIP trimers from a heterogeneous Env mixture using CD4 binding site-directed (CD4bs) non-bNAbs in a negative-selection purification process. These non-bNAbs recognize the primary receptor CD4bs only on disordered trimers but not on the native Env spike or well-ordered soluble trimers due to steric hindrance. Following negative selection to remove disordered oligomers, we demonstrated recovery of well-ordered, homogeneous trimers by electron microscopy (EM). We obtained 3D EM reconstructions of unliganded trimers, as well as in complex with sCD4, a panel of CD4bs-directed bNAbs, and the cleavage-dependent, trimer-specific bNAb, PGT151. Using bio-layer light interferometry (BLI) we demonstrated that the well-ordered trimers were efficiently recognized by bNAbs and poorly recognized by non-bNAbs, representing soluble mimics of the native viral spike. Biophysical characterization was consistent with the thermostability of a homogeneous species that could be further stabilized by specific bNAbs. This study revealed that Env trimers generate different frequencies of well-ordered versus disordered aberrant trimers even when they are genetically identical. By negatively selecting the native-like well-ordered trimers, we establish a new means to obtain soluble Env mimetics derived from subtypes B and C for expanded use as candidate vaccine immunogens.


Subject(s)
Cell Surface Display Techniques/methods , Epitopes/immunology , HIV-1/immunology , Protein Engineering/methods , Recombinant Proteins/isolation & purification , env Gene Products, Human Immunodeficiency Virus/isolation & purification , AIDS Vaccines/isolation & purification , AIDS Vaccines/metabolism , Antibodies, Neutralizing/immunology , Antibody Specificity , Epitopes/chemistry , Epitopes/metabolism , HEK293 Cells , Humans , Models, Molecular , Protein Folding , Protein Multimerization/immunology , Protein Structure, Quaternary , Recombinant Proteins/chemistry , Recombinant Proteins/immunology , Recombinant Proteins/metabolism , env Gene Products, Human Immunodeficiency Virus/chemistry , env Gene Products, Human Immunodeficiency Virus/immunology , env Gene Products, Human Immunodeficiency Virus/metabolism
10.
Proc Natl Acad Sci U S A ; 110(45): 18256-61, 2013 Nov 05.
Article in English | MEDLINE | ID: mdl-24145402

ABSTRACT

We compare the antigenicity and conformation of soluble, cleaved vs. uncleaved envelope glycoprotein (Env gp)140 trimers from the subtype A HIV type 1 (HIV-1) strain BG505. The impact of gp120-gp41 cleavage on trimer structure, in the presence or absence of trimer-stabilizing modifications (i.e., a gp120-gp41 disulfide bond and an I559P gp41 change, together designated SOSIP), was assessed. Without SOSIP changes, cleaved trimers disintegrate into their gp120 and gp41-ectodomain (gp41ECTO) components; when only the disulfide bond is present, they dissociate into gp140 monomers. Uncleaved gp140s remain trimeric whether SOSIP substitutions are present or not. However, negative-stain electron microscopy reveals that only cleaved trimers form homogeneous structures resembling native Env spikes on virus particles. In contrast, uncleaved trimers are highly heterogeneous, adopting a variety of irregular shapes, many of which appear to be gp120 subunits dangling from a central core that is presumably a trimeric form of gp41ECTO. Antigenicity studies with neutralizing and nonneutralizing antibodies are consistent with the EM images; cleaved, SOSIP-stabilized trimers express quaternary structure-dependent epitopes, whereas uncleaved trimers expose nonneutralizing gp120 and gp41ECTO epitopes that are occluded on cleaved trimers. These findings have adverse implications for using soluble, uncleaved trimers for structural studies, and the rationale for testing uncleaved trimers as vaccine candidates also needs to be reevaluated.


Subject(s)
HIV-1/chemistry , Protein Conformation , Protein Engineering/methods , Protein Subunits/metabolism , env Gene Products, Human Immunodeficiency Virus/chemistry , env Gene Products, Human Immunodeficiency Virus/chemical synthesis , AIDS Vaccines/metabolism , Antibodies, Monoclonal , Electrophoresis, Polyacrylamide Gel , Microscopy, Electron , Mutation, Missense/genetics , Protein Multimerization/genetics , Protein Subunits/genetics , Rosaniline Dyes , env Gene Products, Human Immunodeficiency Virus/ultrastructure
11.
Blood ; 113(7): 1422-31, 2009 Feb 12.
Article in English | MEDLINE | ID: mdl-19059876

ABSTRACT

Broadly neutralizing anti-HIV antibodies are rare and have proved hard to elicit with any immunogen. We have tested in vitro the notion that such antibodies or other antiviral proteins could be made by lentivirus-mediated gene transfer into human hematopoietic stem/progenitor cells (HSPCs), followed by differentiation of the transduced cells into B cells, the most potent antibody-producing cells. To do this, we have developed a highly efficient system for in vitro maturation of secreting B lymphocytes and plasma cells from CD34(+) HSPCs. It is a 3-stage, in vitro culture system that supports normal human B-lineage development from HSPCs to antibody-secreting plasmablasts (approximately 36%) and plasma cells (approximately 20%). By transducing human cord blood CD34(+) cells with lentiviral vectors encoding a secretory monoclonal anti-HIV antibody, b12 (IgG(1)), we were able to program human B cells to produce in vitro up to 1.5 microg/mL of this broadly neutralizing antibody. Our results suggest that an HIV vaccine might be delivered by autologous transplantation of in vitro-programmed HSPCs, which would develop into antibody-secreting B cells in vivo and provide a continuous supply of anti-HIV neutralizing antibodies.


Subject(s)
AIDS Vaccines/immunology , B-Lymphocytes/cytology , B-Lymphocytes/immunology , Genetic Therapy/methods , HIV Infections/therapy , HIV-1/immunology , Hematopoietic Stem Cells/cytology , AIDS Vaccines/genetics , AIDS Vaccines/metabolism , B-Lymphocytes/metabolism , Cell Culture Techniques , Cell Differentiation/immunology , Cell Lineage/immunology , Cells, Cultured , HIV Antibodies/genetics , HIV Antibodies/immunology , HIV Antibodies/metabolism , HIV Infections/immunology , Humans , Immunoglobulin G/immunology , Immunoglobulin G/metabolism , Lentivirus/genetics , Neutralization Tests , Plasma Cells/cytology , Plasma Cells/immunology , Plasma Cells/metabolism , Stromal Cells/cytology , Transduction, Genetic
12.
J Immunol ; 183(4): 2425-34, 2009 Aug 15.
Article in English | MEDLINE | ID: mdl-19620307

ABSTRACT

Prime-boost immunization with gene-based vectors has been developed to generate more effective vaccines for AIDS, malaria, and tuberculosis. Although these vectors elicit potent T cell responses, the mechanisms by which they stimulate immunity are not well understood. In this study, we show that immunization by a single gene product, HIV-1 envelope, with alternative vector combinations elicits CD8(+) cells with different fine specificities and kinetics of mobilization. Vaccine-induced CD8(+) T cells recognized overlapping third V region loop peptides. Unexpectedly, two anchor variants bound H-2D(d) better than the native sequences, and clones with distinct specificities were elicited by alternative vectors. X-ray crystallography revealed major differences in solvent exposure of MHC-bound peptide epitopes, suggesting that processed HIV-1 envelope gave rise to MHC-I/peptide conformations recognized by distinct CD8(+) T cell populations. These findings suggest that different gene-based vectors generate peptides with alternative conformations within MHC-I that elicit distinct T cell responses after vaccination.


Subject(s)
AIDS Vaccines/genetics , AIDS Vaccines/immunology , CD8-Positive T-Lymphocytes/immunology , Epitopes, T-Lymphocyte/immunology , H-2 Antigens/genetics , H-2 Antigens/immunology , HIV Envelope Protein gp120/genetics , HIV Envelope Protein gp120/immunology , AIDS Vaccines/administration & dosage , AIDS Vaccines/metabolism , Animals , CD8-Positive T-Lymphocytes/metabolism , CD8-Positive T-Lymphocytes/virology , Cell Line , Cells, Cultured , Clone Cells , Epitopes, T-Lymphocyte/administration & dosage , Epitopes, T-Lymphocyte/genetics , Epitopes, T-Lymphocyte/metabolism , Genetic Vectors/administration & dosage , Genetic Vectors/immunology , Genetic Vectors/metabolism , H-2 Antigens/administration & dosage , H-2 Antigens/metabolism , HIV Envelope Protein gp120/administration & dosage , HIV Envelope Protein gp120/metabolism , Histocompatibility Antigen H-2D , Immunization, Secondary , Mice , Mice, Inbred BALB C , Protein Binding/genetics , Protein Binding/immunology
13.
Cell Rep ; 37(5): 109922, 2021 11 02.
Article in English | MEDLINE | ID: mdl-34731616

ABSTRACT

Recognition of N-linked glycan at residue N276 (glycan276) at the periphery of the CD4-binding site (CD4bs) on the HIV-envelope trimer is a formidable challenge for many CD4bs-directed antibodies. To understand how this glycan can be recognized, here we isolate two lineages of glycan276-dependent CD4bs antibodies. Antibody CH540-VRC40.01 (named for donor-lineage.clone) neutralizes 81% of a panel of 208 diverse strains, while antibody CH314-VRC33.01 neutralizes 45%. Cryo-electron microscopy (cryo-EM) structures of these two antibodies and 179NC75, a previously identified glycan276-dependent CD4bs antibody, in complex with HIV-envelope trimer reveal substantially different modes of glycan276 recognition. Despite these differences, binding of glycan276-dependent antibodies maintains a glycan276 conformation similar to that observed in the absence of glycan276-binding antibodies. By contrast, glycan276-independent CD4bs antibodies, such as VRC01, displace glycan276 upon binding. These results provide a foundation for understanding antibody recognition of glycan276 and suggest its presence may be crucial for priming immunogens seeking to initiate broad CD4bs recognition.


Subject(s)
AIDS Vaccines/immunology , Broadly Neutralizing Antibodies/immunology , Epitopes , HIV-1/immunology , Polysaccharides/immunology , env Gene Products, Human Immunodeficiency Virus/immunology , AIDS Vaccines/metabolism , Antibody Specificity , Binding Sites, Antibody , Broadly Neutralizing Antibodies/metabolism , Broadly Neutralizing Antibodies/ultrastructure , CD4 Antigens/immunology , CD4 Antigens/metabolism , Cryoelectron Microscopy , HEK293 Cells , HIV-1/metabolism , Humans , Models, Molecular , Polysaccharides/metabolism , Protein Binding , Protein Conformation , Single Molecule Imaging , Structure-Activity Relationship , env Gene Products, Human Immunodeficiency Virus/metabolism
14.
J Pharm Sci ; 109(1): 911-921, 2020 01.
Article in English | MEDLINE | ID: mdl-31682830

ABSTRACT

Inducing immune responses protecting from HIV infection or at least controlling replication poses a huge challenge to modern vaccinology. An increasingly discussed strategy to elicit a potent and broad neutralizing antibody response is the immobilization of HIV's trimeric envelope (Env) surface receptor on a nanoparticulate carrier. As a conceptual proof, we attached an Env variant (BG505 SOSIP.664) to highly stable and biocompatible silica nanoparticles (SiNPs) via site-specific covalent conjugation or nonspecific adsorption to SiNPs. First, we demonstrated the feasibility of SiNPs as platform for Env presentation by a thorough characterization process during which Env density, attachment stability, and antigenicity were evaluated for both formulations. Binding affinities to selected antibodies were in the low nanomolar range for both formulations confirming that the structural integrity of Env is retained after attachment. Second, we explored the recognition of SiNP conjugates by antigen presenting cells. Here, the uptake of Env attached to SiNPs via a site-specific covalent conjugation was 4.5-fold enhanced, whereas adsorbed Env resulted only in a moderate 1.4-fold increase compared with Env in its soluble form. Thus, we propose SiNPs with site-specifically and covalently conjugated Env preferably in a high density as a promising candidate for further investigations as vaccine platform.


Subject(s)
AIDS Vaccines/chemistry , Drug Carriers , HIV Envelope Protein gp120/chemistry , HIV Envelope Protein gp41/chemistry , Nanoparticles , Silicon Dioxide/chemistry , AIDS Vaccines/metabolism , AIDS Vaccines/pharmacology , Adsorption , Animals , Antibodies, Neutralizing/metabolism , Antibody Affinity , Binding Sites, Antibody , Cells, Cultured , Dendritic Cells/metabolism , Drug Compounding , HIV Envelope Protein gp120/metabolism , HIV Envelope Protein gp120/pharmacology , HIV Envelope Protein gp41/metabolism , HIV Envelope Protein gp41/pharmacology , Male , Mice, Inbred C57BL , Nanotechnology , Proof of Concept Study , Protein Multimerization , Protein Structure, Quaternary , Surface Properties
15.
ACS Chem Biol ; 15(3): 789-798, 2020 03 20.
Article in English | MEDLINE | ID: mdl-32109354

ABSTRACT

The high mannose patch (HMP) of the HIV envelope protein (Env) is the structure most frequently targeted by broadly neutralizing antibodies; therefore, many researchers have attempted to use mimics of this region as a vaccine immunogen. In our previous efforts, vaccinating rabbits with evolved HMP mimic glycopeptides containing Man9 resulted in an overall antibody response targeting the glycan core and linker rather than the full glycan or Manα1→2Man tips of Man9 glycans. A possible reason could be processing of our immunogen by host serum mannosidases. We sought to test whether more prolonged dosing could increase the antibody response to intact glycans, possibly by increasing the availability of intact Man9 to germinal centers. Here, we describe a study investigating the impact of immunization regimen on antibody response by testing immunogen delivery through bolus, an exponential series of mini doses, or a continuously infusing mini-osmotic pump. Our results indicate that, with our glycopeptide immunogens, standard bolus immunization elicited the strongest HIV Env-binding antibody response, even though higher overall titers to the glycopeptide were elicited by the exponential and pump regimens. Antibody selectivity for intact glycan was, if anything, slightly better in the bolus-immunized animals.


Subject(s)
AIDS Vaccines/metabolism , Glycopeptides/chemistry , HIV Antibodies/metabolism , HIV Envelope Protein gp120/chemistry , Oligosaccharides/chemistry , Vaccines, Conjugate/metabolism , Animals , Antibodies, Neutralizing , Antibody Formation , Binding Sites , Glycosylation , HIV Envelope Protein gp120/metabolism , HIV Envelope Protein gp120/urine , HIV Infections/prevention & control , Humans , Immunization , Mannosidases/metabolism , Oligosaccharides/urine , Protein Binding , Protein Conformation , Rabbits , Small Molecule Libraries/chemistry , Vaccination
16.
Biochemistry ; 48(33): 7867-77, 2009 Aug 25.
Article in English | MEDLINE | ID: mdl-19552398

ABSTRACT

The V3 region of the envelope glycoprotein gp120 of the human immunodeficiency virus type 1 (HIV-1) is a potential target for an anti-HIV-1 vaccine. Peptides corresponding to V3 form three variations of a beta-hairpin conformation when bound to anti-V3 HIV-1 neutralizing antibodies. The conformation of a V3(IIIB) peptide bound to the 0.5beta antibody, generated against an X4 gp120, has been postulated to represent the V3 conformation of X4 viruses while the conformations of a V3(MN) and a V3(CONSENSUS) peptide bound to the 447-52D human monoclonal antibody were postulated to represent the R5A and R5B V3 conformations of R5 viruses, respectively. To constrain the conformation of synthetic V3 peptides to these X4, R5A, and R5B conformations, we formed disulfide bonds between Cys residues whose location in a peptide template representing the entire V3(CONSENSUS) epitope recognized by the broadly neutralizing 447-52D antibody was changed systematically. In a previous study [Mor, A., et al. (2009) Biochemistry 48, 3288-3303] we showed that these constrained peptides adopted conformations resembling the three antibody-bound V3 conformations according to the location of the disulfide bonds. Here we show that these constrained peptides, with the exception of peptides in which the disulfide bond flanks the GPGR segment, retain high-affinity binding to the 447-52D antibody. Compared with peptides designed to mimic the X4 conformation, peptides designed to mimic either the R5A or R5B conformation had higher affinity to 447-52D. It is possible that constrained peptides which mimic the R5A and R5B conformations of the V3 and retain high-affinity binding to 447-52D are good candidates for eliciting a broad neutralizing antibody response similar to that of 447-52D.


Subject(s)
AIDS Vaccines/metabolism , Antibodies, Monoclonal/metabolism , Antibody Affinity , Immunoglobulin Variable Region/metabolism , Peptide Fragments/metabolism , AIDS Vaccines/chemical synthesis , AIDS Vaccines/immunology , Binding Sites, Antibody , HIV Envelope Protein gp120/chemical synthesis , HIV Envelope Protein gp120/immunology , HIV Envelope Protein gp120/metabolism , HIV-1/immunology , HIV-1/isolation & purification , Humans , Immunoglobulin Fab Fragments/metabolism , Neutralization Tests , Peptide Fragments/chemical synthesis , Peptide Fragments/immunology , Protein Binding/immunology , Protein Conformation , Vaccines, Subunit/chemistry , Vaccines, Subunit/immunology , Vaccines, Subunit/metabolism
17.
J Virol ; 82(16): 8161-71, 2008 Aug.
Article in English | MEDLINE | ID: mdl-18524823

ABSTRACT

Results from Merck's phase II adenovirus type 5 (Ad5) gag/pol/nef test-of-concept trial showed that the vaccine lacked efficacy against human immunodeficiency virus (HIV) infection in a high-risk population. Among the many questions to be explored following this outcome are whether (i) the Ad5 vaccine induced the quality of T-cell responses necessary for efficacy and (ii) the lack of efficacy in the Ad5 vaccine can be generalized to other vector approaches intended to induce HIV type 1 (HIV-1)-specific T-cell responses. Here we present a comprehensive evaluation of the T-cell response profiles from cohorts of clinical trial subjects who received the HIV CAM-1 gag insert delivered by either a regimen with DNA priming followed by Ad5 boosting (n = 50) or a homologous Ad5/Ad5 prime-boost regimen (n = 70). The samples were tested using a statistically qualified nine-color intracellular cytokine staining assay measuring interleukin-2 (IL-2), tumor necrosis factor alpha, macrophage inflammatory protein 1beta, and gamma interferon production and expression of CD107a. Both vaccine regimens induced CD4(+) and CD8(+) HIV gag-specific T-cell responses which variably expressed several intracellular markers. Several trends were observed in which the frequencies of HIV-1-specific CD4(+) T cells and IL-2 production from antigen-specific CD8(+) T cells in the DNA/Ad5 cohort were more pronounced than in the Ad5/Ad5 cohort. Implications of these results for future vaccine development will be discussed.


Subject(s)
Adenoviridae/metabolism , Genes, gag/genetics , T-Lymphocytes/virology , AIDS Vaccines/metabolism , CD4-Positive T-Lymphocytes/virology , CD8-Positive T-Lymphocytes/virology , Chemokine CCL4/biosynthesis , Cohort Studies , DNA/metabolism , Humans , Interleukin-2/biosynthesis , Lysosomal-Associated Membrane Protein 1/biosynthesis , Models, Biological , Phenotype , T-Lymphocytes/metabolism , Tumor Necrosis Factor-alpha/biosynthesis
18.
Bioconjug Chem ; 19(5): 1017-24, 2008 May.
Article in English | MEDLINE | ID: mdl-18442282

ABSTRACT

HIV-1 TAT peptide, which is a cell-penetrating peptide (CPP), was fused to the U1A RNA-binding domain (TatU1A) to generate a sequence-specific siRNA delivery system for mammalian cells. The siRNA contained a short 5'-extension that is specifically recognized by the U1A RNA-binding domain (U1AsiRNA). Specific binding of TatU1A to the U1AsiRNA was confirmed using a gel mobility shift assay. The U1AsiRNA was internalized by cells only when it was preincubated with TatU1A before addition to the cells. Although most of the internalized siRNA seemed to be entrapped in endocytic compartments, efficient redistribution of the entrapped siRNAs was achieved by photostimulation of a fluorophore attached to TatU1A. Once in the cytoplasm, the siRNA induced RNAi-mediated gene silencing. We refer to this delivery strategy as CLIP-RNAi. CLIP-RNAi is a promising strategy for RNAi experiments and for pinpoint RNAi therapy.


Subject(s)
Drug Delivery Systems , RNA Interference , RNA, Small Interfering/metabolism , AIDS Vaccines/chemistry , AIDS Vaccines/genetics , AIDS Vaccines/metabolism , Animals , CHO Cells , Cells, Cultured , Cricetinae , Cricetulus , Electrophoretic Mobility Shift Assay , Endosomes/drug effects , Endosomes/metabolism , Endosomes/radiation effects , ErbB Receptors/drug effects , ErbB Receptors/genetics , ErbB Receptors/metabolism , Gene Silencing/drug effects , Green Fluorescent Proteins/drug effects , Green Fluorescent Proteins/genetics , Green Fluorescent Proteins/metabolism , Photochemistry , RNA Interference/drug effects , RNA Interference/radiation effects , RNA, Small Interfering/chemistry , RNA, Small Interfering/pharmacokinetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism
19.
Curr HIV Res ; 16(4): 280-287, 2018.
Article in English | MEDLINE | ID: mdl-30520377

ABSTRACT

BACKGROUND: HIV-1 Nef protein is a possible attractive target in the development of therapeutic HIV vaccines including protein-based vaccines. The most important disadvantage of protein-based vaccines is their low immunogenicity which can be improved by heat shock proteins (Hsps) as an immunomodulator, and cell-penetrating peptides (CPPs) as a carrier. METHODS: In this study, the HIV-1 Nef and Hsp20-Nef proteins were generated in E.coli expression system for delivery into the HEK-293T mammalian cell line using a novel cell-penetrating peptide, M918, in a non-covalent fashion. The size, zeta potential and morphology of the peptide/protein complexes were studied by scanning electron microscopy (SEM) and Zeta sizer. The efficiency of Nef and Hsp20-Nef transfection using M918 was evaluated by western blotting in HEK-293T cell line. RESULTS: The SEM data confirmed the formation of discrete nanoparticles with a diameter of approximately 200-250 nm and 50-80 nm for M918/Nef and M918/Hsp20-Nef, respectively. The dominant band of ~ 27 kDa and ~ 47 kDa was detected in the transfected cells with the Nef/ M918 and Hsp20-Nef/ M918 nanoparticles at a molar ratio of 1:20 using anti-HIV-1 Nef monoclonal antibody. These bands were not detected in the un-transfected and transfected cells with Nef or Hsp20- Nef protein alone indicating that M918 could increase the penetration of Nef and Hsp20-Nef proteins into the cells. CONCLUSION: These data suggest that M918 CPP can be used to enter HIV-1 Nef and Hsp20-Nef proteins inside mammalian cells efficiently as a promising approach in HIV-1 vaccine development.


Subject(s)
AIDS Vaccines/metabolism , Cell-Penetrating Peptides/metabolism , Drug Carriers/metabolism , HSP20 Heat-Shock Proteins/metabolism , nef Gene Products, Human Immunodeficiency Virus/metabolism , Blotting, Western , Endocytosis , HEK293 Cells , Humans , Microscopy, Electron, Scanning , Protein Transport , Vaccines, Synthetic/metabolism
20.
PLoS One ; 13(8): e0197656, 2018.
Article in English | MEDLINE | ID: mdl-30071025

ABSTRACT

The production of envelope glycoproteins (Envs) for use as HIV vaccines is challenging. The yield of Envs expressed in stable Chinese Hamster Ovary (CHO) cell lines is typically 10-100 fold lower than other glycoproteins of pharmaceutical interest. Moreover, Envs produced in CHO cells are typically enriched for sialic acid containing glycans compared to virus associated Envs that possess mainly high-mannose carbohydrates. This difference alters the net charge and biophysical properties of Envs and impacts their antigenic structure. Here we employ a novel robotic cell line selection strategy to address the problems of low expression. Additionally, we employed a novel gene-edited CHO cell line (MGAT1- CHO) to address the problems of high sialic acid content, and poor antigenic structure. We demonstrate that stable cell lines expressing high levels of gp120, potentially suitable for biopharmaceutical production can be created using the MGAT1- CHO cell line. Finally, we describe a MGAT1- CHO cell line expressing A244-rgp120 that exhibits improved binding of three major families of bN-mAbs compared to Envs produced in normal CHO cells. The new strategy described has the potential to eliminate the bottleneck in HIV vaccine development that has limited the field for more than 25 years.


Subject(s)
AIDS Vaccines/metabolism , Antibody Formation , HIV-1/immunology , High-Throughput Screening Assays , Robotics , Animals , Antibodies, Neutralizing/isolation & purification , Automation, Laboratory/methods , CHO Cells , Cricetinae , Cricetulus , HEK293 Cells , HIV Antibodies/immunology , HIV Antibodies/isolation & purification , High-Throughput Screening Assays/instrumentation , High-Throughput Screening Assays/methods , Humans , Robotics/instrumentation , Robotics/methods
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