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1.
Arch Biochem Biophys ; 716: 109110, 2022 02 15.
Article in English | MEDLINE | ID: mdl-34958749

ABSTRACT

The study presents a new method that detects O2•-, via quantification of 2-hydroxyethidium (2-ΟΗ-Ε+) as low as ∼30 fmoles by High-Performance Thin Layer Chromatography (HPTLC). The method isolates 2-ΟΗ-Ε+ after its extraction by the anionic detergent SDS (at 18-fold higher than its CMC) together with certain organic/inorganic reagents, and its HPTLC-separation from di-ethidium (di-Ε+) and ethidium (Ε+). Quantification of 2-OH-E+ is based on its ex/em maxima at 290/540 nm, and of di-E+ and E+ at 295/545 nm. The major innovations of the present method are the development of protocols for (i) efficient extraction (by SDS) and (ii) sensitive quantification (by HPTLC) for 2-OH-E+ (as well as di-E+ and E+) from most biological systems (animals, plants, cells, subcellular compartments, fluids). The method extracts 2-ΟΗ-Ε+ (by neutralizing the strong binding between its quaternary N+ and negatively charged sites on phospholipids, DNA etc) together with free HE, while protects both from biological oxidases, and also extracts/quantifies total proteins (hydrophilic and hydrophobic) for expressing O2•- levels per protein quantity. The method also uses SDS (at 80-fold lower than its CMC) to extract/remove/wash 2-ΟΗ-Ε+ from cell/organelle exterior membrane sites, for more accurate internal content quantification. The new method is applied on indicative biological systems: (1) artificially stressed (mouse organs and liver mitochondria and nuclei, ±exposed to paraquat, a known O2•- generator), and (2) physiologically stressed (cauliflower plant, exposed to light/dark).


Subject(s)
Cell Extracts/analysis , Ethidium/analogs & derivatives , Superoxides/analysis , Animals , Brain , Brassica/chemistry , Cell Line , Chromatography, Thin Layer/methods , Ethidium/analysis , Heart , Limit of Detection , Lung , Mice , Octoxynol/chemistry , Oxidative Stress , Spleen
2.
Molecules ; 26(11)2021 Jun 03.
Article in English | MEDLINE | ID: mdl-34205065

ABSTRACT

Bacterial resistance to antibiotics due to increased efficiency of the efflux is a serious problem in clinics of infectious diseases. Knowledge of the factors affecting the activity of efflux pumps would help to find the solution. For this, fast and trustful methods for efflux analysis are needed. Here, we analyzed how the assay conditions affect the accumulation of efflux indicators ethidium (Et+) and tetraphenylphosphonium in Salmonella enterica ser. Typhimurium cells. An inhibitor phenylalanyl-arginyl-ß-naphtylamide was applied to evaluate the input of RND family pumps into the total efflux. In parallel to spectrofluorimetric analysis, we used an electrochemical assessment of Et+ concentration. The results of our experiments indicated that Et+ fluorescence increases immediately after the penetration of this indicator into the cells. However, when cells bind a high amount of Et+, the intensity of the fluorescence reaches the saturation level and stops reacting to the accumulated amount of this indicator. For this reason, electrochemical measurements provide more trustful information about the efficiency of efflux when cells accumulate high amounts of Et+. Measurements of Et+ interaction with the purified DNA demonstrated that the affinity of this lipophilic cation to DNA depends on the medium composition. The capacity of DNA to bind Et+ considerably decreases in the presence of Mg2+, Polymyxin B or when DNA is incubated in high ionic strength media.


Subject(s)
DNA/chemistry , Ethidium/analysis , Salmonella typhimurium/growth & development , Spermatozoa/chemistry , Animals , Bacterial Proteins/metabolism , Drug Resistance, Multiple, Bacterial , Ethidium/chemistry , Male , Onium Compounds/chemistry , Organophosphorus Compounds/chemistry , Salmon , Salmonella typhimurium/metabolism , Spectrometry, Fluorescence , Spermatozoa/metabolism
3.
Exp Parasitol ; 190: 1-9, 2018 Jul.
Article in English | MEDLINE | ID: mdl-29750967

ABSTRACT

Loop mediated isothermal amplification (LAMP) assay is sensitive, prompt, high throughput and field deployable technique for nucleic acid amplification under isothermal conditions. In this study, we have developed and optimized four different visualization methods of loop-mediated isothermal amplification (LAMP) assay to detect Pfcrt K76T mutants of P. falciparum and compared their important features for one-pot in-field applications. Even though all the four tested LAMP methods could successfully detect K76T mutants of P. falciparum, however considering the time, safety, sensitivity, cost and simplicity, the malachite green and HNB based methods were found more efficient. Among four different visual dyes uses to detect LAMP products accurately, hydroxynaphthol blue and malachite green could produce long stable color change and brightness in a close tube-based approach to prevent cross-contamination risk. Our results indicated that the LAMP offers an interesting novel and convenient best method for the rapid, sensitive, cost-effective, and fairly user friendly tool for detection of K76T mutants of P. falciparum and therefore presents an alternative to PCR-based assays. Based on our comparative analysis, better field based LAMP visualization method can be chosen easily for the monitoring of other important drug targets (Kelch13 propeller region).


Subject(s)
Antimalarials/pharmacology , Chloroquine/pharmacology , Genotyping Techniques/standards , Nucleic Acid Amplification Techniques/standards , Plasmodium falciparum/classification , Colorimetry , Coloring Agents/analysis , DNA, Protozoan/analysis , DNA, Protozoan/isolation & purification , Drug Resistance , Ethidium/analysis , Fluorescent Dyes/analysis , Genotyping Techniques/methods , Mutation , Naphthalenesulfonates/analysis , Nucleic Acid Amplification Techniques/methods , Plasmodium falciparum/drug effects , Plasmodium falciparum/genetics , Point-of-Care Systems , Reproducibility of Results , Rosaniline Dyes/analysis , Sensitivity and Specificity
4.
Cell Tissue Bank ; 19(3): 399-404, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29453700

ABSTRACT

The purpose of this study is to evaluate the reliability of cartilage digestion and fluorescein diacetate-ethidium bromide (FDA-EB) fluorescence staining for the detection of chondrocyte viability in osteochondral grafts. Sixteen fresh osteochondral grafts were harvested from pig knee condyles, and the articular cartilage tissue was preserved. Each cartilage graft was cut into two 70-µm thick pieces and randomly allocated to Group A or Group B. The cell viability of Group A was detected using FDA-EB fluorescence staining of the digested cartilage, and the viability of Group B was detected with FDA-EB fluorescence staining of cartilage sections. Comparisons of chondrocyte viability and correlation analyses of the two groups were performed using the paired sample t test and Pearson correlation test, respectively. No significant difference was found in the chondrocyte viability between Groups A and B (p > 0.05), and a strong correlation was observed (r = 0.70, p < 0.05). Therefore, cartilage digestion with FDA-EB fluorescence staining is a reliable method for detecting chondrocyte viability in osteochondral grafts.


Subject(s)
Cartilage, Articular/cytology , Chondrocytes/cytology , Ethidium/analysis , Fluoresceins/analysis , Fluorescent Dyes/analysis , Animals , Cell Survival , Fluorescence , Knee Joint/cytology , Male , Microtomy/methods , Staining and Labeling/methods , Swine
5.
Medicina (Kaunas) ; 53(2): 122-130, 2017.
Article in English | MEDLINE | ID: mdl-28462872

ABSTRACT

BACKGROUND AND OBJECTIVE: One of the main causes of bacterial resistance to antimicrobials is multidrug resistance induced by the increased efficiency of the efflux pumps. In this study we analyzed how the conditions of assay affect the efflux of indicator substrates ethidium (Et+) and tetraphenylphosphonium (TPP+) in Salmonella enterica ser. Typhimurium cells. Impact of the outer membrane permeability barrier, composition and temperature of the medium on accumulation of the indicator compounds also was analyzed. MATERIALS AND METHODS: The fluorescence of Et+ and Nile Red was measured using 96-well plates and a plate reader. In parallel to traditional studies of fluorescence we applied a constructed selective electrode to follow the accumulation of Et+ in S. enterica cells. Simultaneously with monitoring of Et+ concentration in the cell incubation medium, electrochemical measurements of TPP+ accumulation were performed. Furthermore, Et+ and TPP+ were used within the same sample as agents competing for the interaction with the efflux pumps. An inhibitor phenylalanyl-arginyl-ß-naphtylamide (PAßN) was applied to evaluate the input of RND-family pumps in the total efflux of these indicator compounds. RESULTS: S. enterica cells with the intact outer membrane (OM) bound very low amounts of Et+ or TPP+. Cells with the permeabilized OM accumulate considerably higher amounts of the indicator compounds at pH 8.0, but only Et+ was considerably accumulated at pH 6.5. At conditions of electrochemical monitoring accumulation of Et+ by the permeabilized cells at 37°C was considerably faster than at 23°C, but at the higher temperature most of the cell-accumulated Et+ was extruded back to the medium. The fluorescence of Et+ in suspension of cells incubated in 400mmol/L Tris buffer was about twice higher compared to 100mmol/L one. The inhibitory action of TPP+ on Et+ efflux was evident only in 400mmol/L Tris although PAßN effectively increased Et+ fluorescence at both buffer concentrations. CONCLUSIONS: Results of our experiments indicate that ionic strength of the incubation medium influence the selectivity, the medium temperature and the assay conditions impact the kinetics of efflux. The lower accumulated amount and the weaker fluorescence of Et+ registered in slightly acidic medium indicate that ΔΨ plays a role in the accumulation of this indicator cation. The bound amount of Et+ to the de-energized or permeabilized cells considerably varies depending on the conditions and methods of de-energization or permeabilization of cells. Tris/EDTA permeabilization of the cells does not inhibit the efflux.


Subject(s)
Cell Membrane Permeability , Ethidium/metabolism , Onium Compounds/metabolism , Organophosphorus Compounds/metabolism , Salmonella enterica/metabolism , Cations/analysis , Cations/metabolism , Cell Membrane/metabolism , DNA, Bacterial/metabolism , Drug Resistance, Multiple, Bacterial , Ethidium/analysis , Fluorometry/methods , Indicators and Reagents/metabolism , Onium Compounds/analysis , Organophosphorus Compounds/analysis , Salmonella enterica/chemistry
6.
Cell Physiol Biochem ; 35(1): 148-59, 2015.
Article in English | MEDLINE | ID: mdl-25591758

ABSTRACT

BACKGROUND: Chronic heart failure is characterized by decreased exercise capacity with early exacerbation of fatigue and dyspnea. Intrinsic skeletal muscle abnormalities can play a role in exercise intolerance. Causal or contributing factors responsible for muscle alterations have not been completely defined. This study evaluated skeletal muscle oxidative stress and NADPH oxidase activity in rats with myocardial infarction (MI) induced heart failure. METHODS AND RESULTS: Four months after MI, rats were assigned to Sham, MI-C (without treatment), and MI-NAC (treated with N-acetylcysteine) groups. Two months later, echocardiogram showed left ventricular dysfunction in MI-C; NAC attenuated diastolic dysfunction. In soleus muscle, glutathione peroxidase and superoxide dismutase activity was decreased in MI-C and unchanged by NAC. 3-nitrotyrosine was similar in MI-C and Sham, and lower in MI-NAC than MI-C. Total reactive oxygen species (ROS) production was assessed by HPLC analysis of dihydroethidium (DHE) oxidation fluorescent products. The 2-hydroxyethidium (EOH)/DHE ratio did not differ between Sham and MI-C and was higher in MI-NAC. The ethidium/DHE ratio was higher in MI-C than Sham and unchanged by NAC. NADPH oxidase activity was similar in Sham and MI-C and lower in MI-NAC. Gene expression of p47(phox) was lower in MI-C than Sham. NAC decreased NOX4 and p22(phox) expression. CONCLUSIONS: We corroborate the case that oxidative stress is increased in skeletal muscle of heart failure rats and show for the first time that oxidative stress is not related to increased NADPH oxidase activity.


Subject(s)
Acetylcysteine/pharmacology , Free Radical Scavengers/pharmacology , Oxidative Stress/drug effects , Animals , Ethidium/analogs & derivatives , Ethidium/analysis , Glutathione Peroxidase/metabolism , Heart Failure/epidemiology , Heart Failure/metabolism , Heart Failure/pathology , Heart Ventricles/physiopathology , Male , Malondialdehyde/blood , Muscle, Skeletal/drug effects , Muscle, Skeletal/metabolism , Myocardial Infarction/etiology , Myocardial Infarction/metabolism , NADPH Oxidase 4 , NADPH Oxidases/genetics , NADPH Oxidases/metabolism , Rats , Rats, Wistar , Reactive Oxygen Species/metabolism , Superoxide Dismutase/metabolism , Tyrosine/analogs & derivatives , Tyrosine/analysis
7.
Anal Biochem ; 423(1): 147-51, 2012 Apr 01.
Article in English | MEDLINE | ID: mdl-22310498

ABSTRACT

Because superoxide is involved in various physiological processes, many efforts have been made to improve its accurate quantification. We optimized and validated a superoxide-specific and -sensitive detection method. The protocol is based on fluorescence detection of the superoxide-specific hydroethidine (HE) oxidation product, 2-hydroxyethidium. We established a method for the quantification of superoxide production in isolated mitochondria without the need for acetone extraction and purification chromatography as described in previous studies.


Subject(s)
Chemistry Techniques, Analytical/methods , Fluorometry , Mitochondria/metabolism , Phenanthridines/chemistry , Superoxides/analysis , Acetone/chemistry , Animals , Antimycin A/pharmacology , Caenorhabditis elegans , Carbonyl Cyanide p-Trifluoromethoxyphenylhydrazone/pharmacology , Ethidium/analogs & derivatives , Ethidium/analysis , Mitochondria/drug effects , Oxidation-Reduction
8.
Biomacromolecules ; 13(12): 4089-97, 2012 Dec 10.
Article in English | MEDLINE | ID: mdl-23140570

ABSTRACT

Hybrid dendritic-linear block copolymers based on a 4-arm poly(ethylene glycol) (PEG) core were synthesized using an accelerated AB2/CD2 dendritic growth approach through orthogonal amine/epoxy and thiol-yne chemistries. The biological activity of these 4-arm and the corresponding 2-arm hybrid dendrimers revealed an enhanced, dendritic effect with an exponential increase in cell internalization concomitant with increasing amine end groups and low cytotoxicity. Furthermore, the ability of these hybrid dendrimers to induce endosomal escape combined with their facile and efficient synthesis makes them attractive platforms for gene transfection. The 4-arm-based dendrimer showed significantly improved DNA binding and gene transfection capabilities in comparison with the 2-arm derivative. These results combined with the MD simulation indicate a significant effect of both the topology of the PEG core and the multivalency of these hybrid macromolecules on their DNA binding and delivery capablities.


Subject(s)
Cations/chemistry , DNA/chemistry , Dendrimers/chemistry , Polyethylene Glycols/chemistry , Cell Survival , Dendrimers/pharmacokinetics , Ethidium/analysis , Gene Transfer Techniques , HeLa Cells , Humans , Magnetic Resonance Spectroscopy , Microscopy, Confocal , Molecular Dynamics Simulation , Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization , Transfection
9.
Mol Vis ; 17: 876-84, 2011 Apr 08.
Article in English | MEDLINE | ID: mdl-21527999

ABSTRACT

PURPOSE: The present study was performed to investigate the early effects of blue light irradiation of photoreceptors in retinal explant cultures. METHODS: Murine retinal explant cultures were irradiated with visible blue light (405 nm) with an output power of 1 mW/cm2. Dihydroethidium was used to determine the production of reactive oxygen species. Morphological alterations of photoreceptor outer segments were determined by live imaging microscopy with mitochondrial dye JC-1. Transmission and scanning electron microscopy were used for ultrastructural evaluations. Cell death in the retina was assessed by the terminal deoxynucleotidyl transferase-mediated deoxyuridine triphosphate (dUTP) nick end labeling (TUNEL) assay method. RESULTS: Live retinal explants displayed an increase in reactive oxygen species production, as revealed by fluorescent dihydroethidium products in photoreceptor cells after 30 min of blue light exposure. After 3 h of exposure, blue light caused disorganization of the normally neatly stacked outer segments of living photoreceptors. Ultrastructural analysis revealed breaks in the cell membrane surrounding the outer segments, especially in the middle section. The outer segments appeared tortuous, and the lamellar structures had been disrupted. TUNEL-staining revealed that long-term blue light exposure induced photoreceptor cell death. CONCLUSIONS: In vitro blue light irradiation of retinal explants is a suitable model system for investigating early ultrastructural changes, as well as damage that leads to cell death in photoreceptor cells.


Subject(s)
Light/adverse effects , Photoreceptor Cells, Vertebrate , Retina , Animals , Benzimidazoles/analysis , Carbocyanines/analysis , Cell Death/radiation effects , Ethidium/analogs & derivatives , Ethidium/analysis , Female , Fluorescent Dyes/analysis , In Situ Nick-End Labeling , Male , Mice , Mice, Inbred C57BL , Microscopy, Electron, Scanning , Microscopy, Electron, Transmission , Organ Culture Techniques/methods , Photoreceptor Cells, Vertebrate/metabolism , Photoreceptor Cells, Vertebrate/radiation effects , Photoreceptor Cells, Vertebrate/ultrastructure , Reactive Oxygen Species/metabolism , Retina/metabolism , Retina/radiation effects , Retina/ultrastructure
10.
Biochemistry (Mosc) ; 76(11): 1210-9, 2011 Nov.
Article in English | MEDLINE | ID: mdl-22117547

ABSTRACT

Marked fluorescence in cytoplasm, nucleus, and nucleolus was observed in HeLa cells after incubation with each of several fluorescein isothiocyanate-labeled peptides (epithalon, Ala-Glu-Asp-Gly; pinealon, Glu-Asp-Arg; testagen, Lys-Glu-Asp-Gly). This means that short biologically active peptides are able to penetrate into an animal cell and its nucleus and, in principle they may interact with various components of cytoplasm and nucleus including DNA and RNA. It was established that various initial (intact) peptides differently affect the fluorescence of the 5,6-carboxyfluorescein-labeled deoxyribooligonucleotides and DNA-ethidium bromide complexes. The Stern-Volmer constants characterizing the degree of fluorescence quenching of various single- and double-stranded fluorescence-labeled deoxyribooligonucleotides with short peptides used were different depending on the peptide primary structures. This indicates the specific interaction between short biologically active peptides and nucleic acid structures. On binding to them, the peptides discriminate between different nucleotide sequences and recognize even their cytosine methylation status. Judging from corresponding constants of the fluorescence quenching, the epithalon, pinealon, and bronchogen (Ala-Glu-Asp-Leu) bind preferentially with deoxyribooligonucleotides containing CNG sequence (CNG sites are targets for cytosine DNA methylation in eukaryotes). Epithalon, testagen, and pinealon seem to preferentially bind with CAG- but bronchogen with CTG-containing sequences. The site-specific interactions of peptides with DNA can control epigenetically the cell genetic functions, and they seem to play an important role in regulation of gene activity even at the earliest stages of life origin and in evolution.


Subject(s)
DNA/metabolism , Deoxyribonucleotides/metabolism , Oligopeptides/metabolism , Binding Sites , Cell Nucleus/chemistry , Cell Nucleus/metabolism , Cytosine/chemistry , Cytosine/metabolism , DNA/analysis , DNA/chemistry , DNA Methylation , Deoxyribonucleotides/chemistry , Ethidium/analogs & derivatives , Ethidium/analysis , Fluorescein-5-isothiocyanate/chemistry , Fluorescence , Fluorescent Dyes/chemistry , HeLa Cells , Humans , Oligopeptides/chemistry , Transcriptional Activation
11.
Tsitologiia ; 53(6): 474-81, 2011.
Article in Russian | MEDLINE | ID: mdl-21870503

ABSTRACT

Time course of changes in intracellular water, K+ and Na+ of U937 cells incubated in hyperosmolar medium with addition of 200 mM sucrose was studied. Ouabain-sensitive and ouabain-resistant Rb+ (K+) influxes were measured during regulatory cell volume increase (RVI) and apoptotic volume decrease (AVD). Microscopy of cells stained by Acrydine orange, Ethydium bromide, APOPercenrage Dye and polycaspase marker FLICA was performed. We found that initial osmotic cell shrinkage induced both RVI and AVD responses. RVI dominated at the early stage whereas AVD prevailed at the later stage. In view of the data obtained in U937 cells the current opinion that RVI "dysfunction" is a prerequisite for apoptosis and AVD (Subramanyam et al., 2010) should be revised. U937 cells are capable to trigger of apoptosis and AVD in spite of the unimpaired RVI response. It is concluded that AVD plays a significant role in preventing osmotic lysis of apoptotic cells rather than in the initiation of apoptosis.


Subject(s)
Apoptosis/physiology , Cell Size , Stress, Physiological , Water , Acridine Orange/analysis , Caspases/analysis , Ethidium/analysis , Humans , Osmosis , Osmotic Pressure , Potassium/metabolism , Sodium/metabolism , Sucrose/metabolism , U937 Cells , Water/metabolism
12.
Article in Russian | MEDLINE | ID: mdl-22308732

ABSTRACT

AIM: Study of bactericidal effect of phenol on Yersinia pseudotuberculosis produced in various nutrient media. MATERIALS AND METHODS: Bacteria were produced in nutrient broth (NB) and NB with glucose (NB+Glu) or galactose (NB+Gal) at 8 degrees C. Effect of phenol on bacteria was evaluated by changes in optical density of suspension and quantity of viable cells, and by staining of cells with ethidium bromide. Lipids were analyzed by thin-layer and gas-liquid chromatography, gas-liquid- chromatography--mass-spectrometry, differential scanning calorimetry; lipopolysaccharides (LPS)--by electrophoresis in polyacrylamide gel in the presence of sodium dodecylsulfate (SDS-PAGE). RESULTS: Survival rate of bacteria is dependent on phenol concentration, biocide treatment time and parameters of cell cultivation. Addition of glucose or galactose into the nutrient medium increases the resistance of Yersinia against phenol. Bacterial cultures are heterogeneous in the resistance against phenol independently of the production parameters. Phenol causes damage in outer bacterial membrane, as evidenced by accumulation of lysophosphatidylethanolamine in the cell, the main product of enzyme activity of membrane-bound phospholipase A, and release into the cultural medium of part of LPS. Treatment by phenol in bactericidal concentration is accompanied by changes in phospholipidic and fatty acid composition of bacterial cell envelope. CONCLUSION: New data are obtained on environmental factors that contribute to the increase of resistance of bacteria against phenolic biocides.


Subject(s)
Cell Membrane/metabolism , Lipopolysaccharides/analysis , Phenol/pharmacology , Yersinia pseudotuberculosis , Calorimetry, Differential Scanning , Cell Membrane/drug effects , Chromatography, Thin Layer , Culture Media , Electrophoresis, Polyacrylamide Gel , Ethidium/analysis , Fatty Acids/analysis , Fatty Acids/metabolism , Galactose/metabolism , Galactose/pharmacology , Gas Chromatography-Mass Spectrometry , Glucose/metabolism , Glucose/pharmacology , Lipopolysaccharides/metabolism , Lysophospholipids/analysis , Yersinia pseudotuberculosis/drug effects , Yersinia pseudotuberculosis/metabolism , Yersinia pseudotuberculosis Infections/microbiology
13.
Toxicon ; 51(8): 1400-8, 2008 Jun 15.
Article in English | MEDLINE | ID: mdl-18460413

ABSTRACT

The highly potent marine toxin maitotoxin (MTX) evoked an increase in cytosolic Ca(2+) levels in fura-2 loaded rat aortic smooth muscle cells, which was dependent on extracellular Ca(2+). This increase was almost fully inhibited by KB-R7943, a potent selective inhibitor of the reverse mode of the Na(+)/Ca(2+) exchanger (NCX). Cell viability was assessed using ethidium bromide uptake and the alamarBlue cytotoxicity assay. In both assays MTX-induced toxicity was attenuated by KB-R7943, as well as by MDL 28170, a membrane permeable calpain inhibitor. Maitotoxin-evoked contractions of rat aortic strip preparations in vitro, which persist following washout of the toxin, were relaxed by subsequent addition of KB-R7943 or MDL 28170, either in the presence of, or following washout of MTX. These results suggest that MTX targets the Na(+)/Ca(2+) exchanger and causes it to operate in reverse mode (Na(+) efflux/Ca(2+) influx), thus leading to calpain activation, NCX cleavage, secondary Ca(2+) overload and cell death.


Subject(s)
Calcium/metabolism , Calpain/metabolism , Ion Transport/drug effects , Marine Toxins/pharmacology , Oxocins/pharmacology , Sodium/metabolism , Thiourea/analogs & derivatives , Animals , Cells, Cultured , Enzyme Activation/drug effects , Ethidium/analysis , Fluorescent Dyes/analysis , Fluorometry , Fura-2/analysis , In Vitro Techniques , Indicators and Reagents , Marine Toxins/antagonists & inhibitors , Muscle Contraction , Muscle, Smooth, Vascular/drug effects , Oxazines , Oxocins/antagonists & inhibitors , Rats , Sodium-Calcium Exchanger/antagonists & inhibitors , Thiourea/pharmacology , Xanthenes
14.
J Biochem Biophys Methods ; 70(6): 1163-73, 2008 Apr 24.
Article in English | MEDLINE | ID: mdl-18177945

ABSTRACT

The UV-absorption, fluorescence and CD spectra of aps 23 bp oligoduplexes were performed for potential diagnostic purpose. These oligonucleotide sequences were mimicked from natural mutations (mitochondrial genome) of human population (unpublished). This work was designed on the basis of hybridization of non-self complementary oligoduplexes (aps) containing no mismatch, one-mismatch and two-mismatches. Since melting temperature is dependent on concentration of the oligoduplex, various concentrations were used in this study protocol. The thermal spectra profiles (UV absorbance and fluorescence) of these oligoduplexes (aps) are different for a particular concentration, and can be implicated for mutations. -dF/dT (or dA/dT) vs T, lnK (or RlnK) vs TM, DeltaG vs TM, DeltaS vs TM and DeltaH vs TM are also variable for those sequences. All these thermodynamic data were calculated from absorbance (at 260 nm) data. On the contrary to the 23 bp oligoduplexes (aps), the PCR products of 97 bp and 256 bp length were genotyped with ETBR (excitation 530 nm, emission 600 nm) fluorimetrically. But our attempts to genotype these PCR sequences with isothermal UV absorbance spectroscopy were unsuccessful. Isothermal UV absorbance spectra has a limitation of sequence length. However, the structural conformation (all B-type) of the oligoduplexes (aps) was determined using CD. The minor discrepancy in CD spectra of these oligoduplexes are not significant for mutational analysis. 97 bp nested PCR product was an amplicon having either GcT or AcC mutation of mitochondria of normal human population, whereas 256 bp PCR product was an amplicon of human BRCA2 gene (NCBI Accession No. AY151039) of chromosome 13 having either A or G mutation at position -26.


Subject(s)
Ethidium/analysis , Oligonucleotides/analysis , Oligonucleotides/genetics , Polymorphism, Single Nucleotide/genetics , Spectrometry, Fluorescence/methods , Temperature , Apoptosis Regulatory Proteins , BRCA2 Protein/genetics , Biophysical Phenomena , Biophysics , Circular Dichroism , Genotype , Humans , Thermodynamics
15.
J Pharm Biomed Anal ; 46(1): 45-51, 2008 Jan 07.
Article in English | MEDLINE | ID: mdl-17931814

ABSTRACT

Isometamidium, a mixture of related substances of which 8-(3-m-amidinophenyl-2-triazeno)-3-amino-5-ethyl-6-phenylphenanthridinium chloride hydrochloride (M&B4180A) is the principal active component, is the only chemical agent available for prophylaxis of veterinary trypanosomiasis. A method for the simultaneous quantitation of the major constituents M&B4180A, 3-(3-m-amidinophenyl-2-triazeno)-8-amino-5-ethyl-6-phenylphenanthridinium chloride hydrochloride (M&B38897), 7-(m-amidinophenyldiazo)-3,8-diamino-5-ethyl-6-phenylphenanthridinium chloride hydrochloride (M&B4250) and 3,8-di(3-m-amidinophenyltriazeno)-5-ethyl-6-phenylphenanthridinium chloride dihydrochloride (M&B4596) is described. The related substances are resolved on a Gemini C18 column (150 mm x 4.6 mm, 5 microm) using a mobile phase composed of a mixture of acetonitrile and 50 mM ammonium formate buffer pH 2.8 (25:75 v/v) at a flow rate of 1 ml/min with UV detection at 320 nm. The method is compatible with electrospray ionisation mass spectrometry and provides a tool for the control of substandard and counterfeit commercial preparations of isometamidium.


Subject(s)
Chromatography, High Pressure Liquid/methods , Phenanthridines/analysis , Trypanocidal Agents/analysis , Animals , Azo Compounds/analysis , Azo Compounds/chemistry , Drug Contamination/prevention & control , Ethidium/analogs & derivatives , Ethidium/analysis , Ethidium/chemistry , International Cooperation , Mass Spectrometry/methods , Molecular Structure , Phenanthridines/chemistry , Phenanthridines/standards , Regression Analysis , Reproducibility of Results , Spectrometry, Mass, Electrospray Ionization/methods , Trypanocidal Agents/chemistry , Veterinary Drugs/analysis , Veterinary Drugs/chemistry
16.
Biochem J ; 406(1): 77-83, 2007 Aug 15.
Article in English | MEDLINE | ID: mdl-17472580

ABSTRACT

The strong ROS (reactive oxygen species) production, part of an antioxidant response of human fibroblasts triggered by DHA (docosahexaenoic acid; C(22:6,n-3), served as a model for deciphering the relative contribution of NOX (NADPH oxidase) to ROS production, as the role of this enzymatic system remains controversial. Using hydroxyethidium fluorescence for fibroblast ROS production, RT (reverse transcriptase)-PCR for NOX 4 mRNA quantification and mRNA silencing, we show that ROS production evolves in parallel with the catalytic activity of NOX and is suppressed by siNOX 4 (small interference oligonucleotide RNA directed against NOX 4) silencing. Apocynin and plumbagin, specific inhibitors of NOX, prevent ROS production in this cellular model and confirm the role of NOX 4 for this production. Furthermore, we show that, in cell lysates, NOX 4 activity can be modulated by PUFAs (polyunsaturated fatty acids) at the micromolar level in the presence of calcium: NOX 4 activity is increased by arachidonic acid (C20:4,n-6) (approximately 175% of the control), and conjugated linoleic acid (C18:2 [9Z,11E]) is a potent inhibitor (50% of the control). Unexpectedly, intracellular superoxide dismutase does not participate in the modulation of this ROS production and the opposite effects of some PUFAs, described in our experiments, could suggest another way of regulating NOX activity.


Subject(s)
Docosahexaenoic Acids/pharmacology , Fibroblasts/drug effects , Fibroblasts/metabolism , NADPH Oxidases/metabolism , Superoxides/metabolism , Cells, Cultured , Chromatography, High Pressure Liquid , Chromatography, Liquid , Ethidium/analysis , Fibroblasts/enzymology , Gene Expression Regulation, Enzymologic/drug effects , Gene Silencing/drug effects , Humans , Mass Spectrometry , NADPH Oxidase 4 , NADPH Oxidases/chemistry , NADPH Oxidases/genetics , RNA, Messenger/genetics , RNA, Messenger/metabolism , Reactive Oxygen Species/metabolism , Time Factors
17.
Mol Immunol ; 44(7): 1551-8, 2007 Mar.
Article in English | MEDLINE | ID: mdl-17027970

ABSTRACT

Invasive Salmonella has been reported to induce apoptosis of macrophages as a part of its infection process, which may allow it to avoid detection by the innate immune system. However, the bacterial components capable of inducing apoptosis, particularly under the environments offered by the host have not been fully identified. Therefore, in the present study, attempts were made to evaluate the apoptotic potential of Salmonella enterica serovar Typhi (S. typhi) outer membrane protein expressed under stress conditions like iron, oxidative and anaerobic simulating the in vivo situations encountered by the pathogen. Analysis of data revealed that a coordinately expressed 69kDa outer membrane protein (OMP) expressed with enhanced intensity under iron, oxidative and anaerobic stress conditions caused apoptotic cell death in 51% of macrophages, whereas OMPs of S. typhi extracted under normal conditions accounted for apoptotic cell death in only 31% of macrophages. A significantly enhanced activity of caspase-3 was observed during macrophage-apoptosis induced by this protein. A significant increase in the extent of lipid peroxidation (levels of oxidant) and decrease in the activities of antioxidants was also observed which correlated with the increased generation of tumor necrosis factor-alpha, interleukine-1alpha and interleukine-6. These results suggest that caspase-3 and tumor necrosis factor-alpha in conjunction with other cytokines may induce apoptotic cell death through the up-regulation of oxidants and down-regulation of antioxidants. These findings may be relevant for the better understanding of the disease pathophysiology and for the future developments of diagnostic and preventive strategies during the host-pathogen interactions.


Subject(s)
Apoptosis , Bacterial Outer Membrane Proteins/metabolism , Caspase 3/metabolism , Macrophages, Peritoneal/immunology , Salmonella typhi/metabolism , Tumor Necrosis Factor-alpha/metabolism , Animals , Annexin A5/analysis , Annexin A5/chemistry , Bacterial Outer Membrane Proteins/pharmacology , Benzimidazoles , Catalase/analysis , Catalase/metabolism , DNA/metabolism , DNA Fragmentation , Ethidium/analysis , Ethidium/chemistry , Fluorescein-5-isothiocyanate/analysis , Fluorescein-5-isothiocyanate/chemistry , Lipid Peroxidation , Macrophages, Peritoneal/drug effects , Male , Mice , Mice, Inbred BALB C , Monokines/analysis , Reactive Oxygen Species/metabolism , Superoxide Dismutase/analysis , Superoxide Dismutase/metabolism
18.
J Thorac Cardiovasc Surg ; 154(5): 1756-1762, 2017 11.
Article in English | MEDLINE | ID: mdl-28651938

ABSTRACT

OBJECTIVE: Congenital bicuspid aortic valve (BAV) is distinctly associated with the development of ascending aortopathy in adulthood, portending risk of both ascending aortic aneurysm and dissection. Our previous work implicated deficiency in oxidative stress response as a mediator of the BAV-associated aortopathy. We hypothesize that reactive oxygen species generation invokes elevated local oxidative tissue damage in ascending aorta of patients with BAV. METHODS: Ascending aortic specimens were obtained from patients undergoing elective aortic replacement and/or aortic valve replacement and during heart transplant operations. Levels of superoxide anion were measured via high-pressure liquid chromatography-based detection of 2-hydroxyethidium in aortic specimens. Lipid peroxidation and enzymatic activity of superoxide dismutase and peroxidase were quantified in aortic specimens. RESULTS: Superoxide anion production was elevated in aortic specimens from patients with nonaneurysmal BAV (n = 59) compared with specimens from patients with the morphologically normal tricuspid aortic valve (TAV, n = 38). Total superoxide dismutase activity was similar among aortic specimens from patients with TAV versus BAV (n = 27 and 26, respectively), whereas peroxidase activity was increased in aortic specimens from patients with BAV compared with specimens from patients with TAV (n = 14 for both groups). Lipid peroxidation was elevated in aortic specimens from BAV patients compared with TAV patients (n = 14 and 11, respectively). CONCLUSIONS: Superoxide anion accumulation and increased lipid peroxidation demonstrate that, despite increased peroxidase activity, the ascending aortopathy of patients with BAV involves oxidative stress. In addition, the absence of increased superoxide dismutase activity in BAV specimens indicates a deficiency in antioxidant defense. This suggests that the characteristic smooth muscle cell loss observed in BAV aortopathy may be a consequence of superoxide-mediated cell damage.


Subject(s)
Aorta , Aortic Aneurysm , Aortic Valve/abnormalities , Heart Valve Diseases/complications , Oxidative Stress , Tunica Media , Aged , Aorta/metabolism , Aorta/pathology , Aortic Aneurysm/etiology , Aortic Aneurysm/metabolism , Aortic Aneurysm/pathology , Aortic Valve/metabolism , Aortic Valve/pathology , Bicuspid Aortic Valve Disease , Chromatography, Liquid/methods , Ethidium/analogs & derivatives , Ethidium/analysis , Female , Heart Valve Diseases/metabolism , Heart Valve Diseases/pathology , Humans , Lipid Peroxidation , Male , Middle Aged , Superoxide Dismutase/analysis , Superoxides/analysis , Tunica Media/metabolism , Tunica Media/pathology
19.
Free Radic Biol Med ; 40(12): 2214-22, 2006 Jun 15.
Article in English | MEDLINE | ID: mdl-16785035

ABSTRACT

The aim of our study was to examine in rats, age-related differences in myocardial ischemic recovery and to determine the possible relationship with modification of cardiac and vascular oxidative stress. Isolated perfused hearts from young (2 months), adult (6 months), and old (21 months) Wistar rats were subjected to a ischemia-reperfusion sequence. Vascular histomorphological analyses were performed and NADPH oxidase was studied. The expression of angiotensin AT(1) receptors was evaluated using immunostaining. During the preischemic period, but also after ischemia, an aged-related decrease in myocardial functional parameters was observed, and was associated with an increased release of reactive oxygen species. In aortas, the activity and expression of NADPH oxidase increased with age according to the ESR, fluorescence microscopy, and immunohistochemistry; the NADPH oxidase involved was localized in endothelial cells. We found an age-related increase in the expression of endothelial angiotensin AT(1). Our study suggests that myocardial function and adaptation to ischemia-reperfusion declined during aging and are related to a higher level of oxidative stress. Endothelial NADPH oxidase is a major contributor to age-related cardiovascular deterioration. One of the regulators of vascular NADPH oxidase activity, the renin-angiotensin system, may be involved in the modulation of vascular superoxide production during the aging process.


Subject(s)
Aging/metabolism , Cardiovascular System/enzymology , Myocardial Reperfusion Injury/enzymology , NADPH Oxidases/metabolism , Recovery of Function , Superoxides/metabolism , Adaptation, Physiological , Age Factors , Animals , Aorta/enzymology , Aorta/pathology , Cardiovascular System/pathology , Cardiovascular System/physiopathology , Electron Spin Resonance Spectroscopy , Endothelial Cells/enzymology , Endothelial Cells/pathology , Ethidium/analogs & derivatives , Ethidium/analysis , Heart/physiology , Heart/physiopathology , Hemodynamics , In Vitro Techniques , Male , Myocardial Reperfusion Injury/pathology , Myocardial Reperfusion Injury/physiopathology , Myocardium/enzymology , Myocardium/pathology , NADPH Oxidases/analysis , Oxidative Stress , Pyrrolidines/metabolism , Rats , Rats, Wistar , Receptor, Angiotensin, Type 1/analysis , Reperfusion Injury/enzymology , Reperfusion Injury/pathology , Reperfusion Injury/physiopathology
20.
Nucleic Acids Res ; 32(2): 432-40, 2004.
Article in English | MEDLINE | ID: mdl-14739235

ABSTRACT

The parallel (recombination) 'R-triplex' can accommodate any nucleotide sequence with the two identical DNA strands in parallel orientation. We have studied oligonucleotides able to fold back into such a recombination-like structure. We show that the fluorescent base analogs 2-aminopurine (2AP) and 6-methylisoxanthopterin (6MI) can be used as structural probes for monitoring the integrity of the triple-stranded conformation and for deriving the thermodynamic characteristics of these structures. A single adenine or guanine base in the third strand of the triplex-forming and the control oligonucleotides, as well as in the double-stranded (ds) and single-stranded (ss) reference molecules, was substituted with 2AP or 6MI. The 2AP*(T.A) and 6MI*(C.G) triplets were monitored by their fluorescence emission and the thermal denaturation curves were analyzed with a quasi-two-state model. The fluorescence of 2AP introduced into an oligonucleotide sequence unable to form a triplex served as a negative control. We observed a remarkable similarity between the thermodynamic parameters derived from melting of the secondary structures monitored through absorption of all bases at 260 nm or from fluorescence of the single base analog. The similarity suggests that fluorescence of the 2AP and 6MI base analogs may be used to monitor the structural disposition of the third strand. We consider the data in the light of alternative 'branch migration' and 'strand exchange' structures and discuss why these are less likely than the R-type triplex.


Subject(s)
2-Aminopurine/analysis , DNA/chemistry , Nucleic Acid Conformation , Xanthopterin/analysis , 2-Aminopurine/chemistry , Base Pairing , Base Sequence , DNA/genetics , Ethidium/analysis , Fluorescence , Fluorescence Polarization , Nucleic Acid Conformation/radiation effects , Nucleic Acid Denaturation/radiation effects , Oligodeoxyribonucleotides/chemistry , Oligodeoxyribonucleotides/genetics , Temperature , Thermodynamics , Ultraviolet Rays , Xanthopterin/analogs & derivatives , Xanthopterin/chemistry
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