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1.
PLoS Pathog ; 17(2): e1009355, 2021 02.
Article in English | MEDLINE | ID: mdl-33630938

ABSTRACT

A family of eleven glycosylphosphatidylinositol-anchored aspartyl proteases, commonly referred to as CgYapsins, regulate a myriad of cellular processes in the pathogenic yeast Candida glabrata, but their protein targets are largely unknown. Here, using the immunoprecipitation-mass spectrometry approach, we identify the flavodoxin-like protein (Fld-LP), CgPst2, to be an interactor of one of the aspartyl protease CgYps1. We also report the presence of four Fld-LPs in C. glabrata, which are required for survival in kidneys in the murine model of systemic candidiasis. We further demonstrated that of four Fld-LPs, CgPst2 was solely required for menadione detoxification. CgPst2 was found to form homo-oligomers, and contribute to cellular NADH:quinone oxidoreductase activity. CgYps1 cleaved CgPst2 at the C-terminus, and this cleavage was pivotal to oligomerization, activity and function of CgPst2. The arginine-174 residue in CgPst2 was essential for CgYps1-mediated cleavage, with alanine substitution of the arginine-174 residue also leading to elevated activity and oligomerization of CgPst2. Finally, we demonstrate that menadione treatment led to increased CgPst2 and CgYps1 protein levels, diminished CgYps1-CgPst2 interaction, and enhanced CgPst2 cleavage and activity, thereby implicating CgYps1 in activating CgPst2. Altogether, our findings of proteolytic cleavage as a key regulatory determinant of CgPst2, which belongs to the family of highly conserved, electron-carrier flavodoxin-fold-containing proteins, constituting cellular oxidative stress defense system in diverse organisms, unveil a hidden regulatory layer of environmental stress response mechanisms.


Subject(s)
Aspartic Acid Proteases/metabolism , Candida glabrata/metabolism , Candidiasis/microbiology , Fungal Proteins/chemistry , Fungal Proteins/metabolism , Gene Expression Regulation, Fungal/drug effects , Oxidative Stress , Animals , Benzoquinones/pharmacology , Candida glabrata/drug effects , Candida glabrata/genetics , Candida glabrata/growth & development , Candidiasis/drug therapy , Candidiasis/metabolism , Female , Flavodoxin/chemistry , Indicators and Reagents/pharmacology , Mice , Mice, Inbred BALB C , NAD(P)H Dehydrogenase (Quinone)/metabolism , Oxidation-Reduction , Protein Conformation , Vitamin K 3/pharmacology , Vitamins/pharmacology
2.
J Appl Microbiol ; 134(7)2023 Jul 04.
Article in English | MEDLINE | ID: mdl-37410620

ABSTRACT

AIMS: The aim was to develop an electrochemical/optical set-up and correlate it (as validation) with other chemical and physical methods to obtain a simple and cost-effective system to study biofilm formation. METHODS AND RESULTS: A simple microfluidic cell and methods allowed continuous monitoring of the first, critical steps of microbial attachment. We monitored sulfate-reducing bacteria (SRB) at the early stages of biofilm formation. Herein, we studied the formation and adherence of SRB consortium biofilms over an indium tin oxide (ITO) conducting surface using microbiological and chemical methods, microscopic observations [scanning electron microscopy (SEM) and optical], and electrochemical impedance spectroscopy (EIS) measurements. The SRB biofilm formation was evaluated for 30 d by SEM and EIS. Charge transfer resistance decreased when the microbial population colonized the electrode. The monitoring of early-stage biofilm formation was performed using EIS at a single frequency of 1 Hz during the first 36 h. CONCLUSIONS: The simultaneous use of optical, analytical, and microbiological methods allowed us to connect the kinetics of the growth of the microbial consortium to the values obtained via the electrochemical technique. The simple setup we present here can help laboratories with limited resources to study biofilm attachment and facilitates the development of various strategies to control biofilm development in order to avoid damage to metallic structures (microbiologically influenced corrosion, MIC) or the colonization of other industrial structures and medical devices.


Subject(s)
Biofilms , Indicators and Reagents/pharmacology , Electrodes , Corrosion
3.
J Am Chem Soc ; 143(30): 11788-11798, 2021 08 04.
Article in English | MEDLINE | ID: mdl-34289685

ABSTRACT

Transcription factors (TF), such as Myc, are proteins implicated in disease pathogenesis, with dysregulation of Myc expression in 50% of all human cancers. Still, targeting Myc remains a challenge due to the lack of small molecule binding pockets in the tertiary structure. Here, we report synthetic covalently linked TF mimetics that inhibit oncogenic Myc-driven transcription by antagonistic binding of the target DNA-binding site. We combined automated flow peptide chemistry with palladium(II) oxidative addition complexes (OACs) to engineer covalent protein dimers derived from the DNA-binding domains of Myc, Max, and Omomyc TF analogs. Palladium-mediated cross-coupling of synthesized protein monomers resulted in milligram quantities of seven different covalent homo- and heterodimers. The covalent helical dimers were found to bind DNA and exhibited improved thermal stability. Cell-based studies revealed the Max-Max covalent dimer is cell-penetrating and interfered with Myc-dependent gene transcription resulting in reduced cancer cell proliferation (EC50 of 6 µM in HeLa). RNA sequencing and gene analysis of extracted RNA from treated cancer cells confirmed that the covalent Max-Max homodimer interferes with Myc-dependent transcription. Flow chemistry, combined with palladium(II) OACs, has enabled a practical strategy to generate new bioactive compounds to inhibit tumor cell proliferation.


Subject(s)
Indicators and Reagents/chemistry , Palladium/chemistry , Protein Engineering , Proto-Oncogene Proteins c-myc/chemical synthesis , Cell Proliferation/drug effects , DNA/chemistry , HeLa Cells , Humans , Indicators and Reagents/pharmacology , Models, Molecular , Palladium/pharmacology , Protein Multimerization , Proto-Oncogene Proteins c-myc/chemistry , Proto-Oncogene Proteins c-myc/genetics
4.
J Bioenerg Biomembr ; 53(3): 275-284, 2021 06.
Article in English | MEDLINE | ID: mdl-33704647

ABSTRACT

We have previously reported that syringic acid (SA) extracted from D. aurantiacum var. denneanum (kerr) may be used to prevent diabetic cataract (DC). However, the underlying mechanisms through which SA prevents DC in human lens epithelial cells (HLECs) remained unclear. In the present study, we employed single-molecule optics technologies, including transmission electron microscopy (TEM), atomic force microscopy (AFM), laser scanning confocal microscopy (LSCM) and Raman spectroscopy, to monitor the effect of SA on HLECs biomechanics and organelle structure in real-time. TEM suggested that SA improved the ultrastructure of HLECs with regard to nuclear chromatin condensation and reducing mitochondrial swelling and degeneration, which may aid in the maintenance of HLECs integrity in the presence of glucose. AFM revealed a reduced surface roughness and stiffness following SA treatment, suggesting an improved viscoelasticity of HELCs. Raman spectrometry and LSCM further revealed that these changes were related to a modification of cell liquidity and cytoskeletal structure by SA. Taken together, these results provide insights into the effects of SA on the biomechanics of HLECs and further strengthen the evidence for its potential use as a novel therapeutic strategy for DC prevention.


Subject(s)
DNA-Binding Proteins/drug effects , Gallic Acid/analogs & derivatives , Indicators and Reagents/therapeutic use , Biomechanical Phenomena , Epithelial Cells , Gallic Acid/pharmacology , Gallic Acid/therapeutic use , Humans , Indicators and Reagents/pharmacology
5.
Mol Cell Biochem ; 476(9): 3461-3468, 2021 Sep.
Article in English | MEDLINE | ID: mdl-33982210

ABSTRACT

Postherpetic neuralgia (PHN) is the most common complication of acute herpes zoster. The treatment of PHN remains a challenge for clinical pain management. The present study investigated the P2X7 receptor antagonist brilliant blue G (BBG) whether inhibits endoplasmic reticulum stress and pyroptosis (a necrotic form of cell death) and alleviates PHN. Varicella zoster virus (VZV)-infected CV-1 cells were used to induce PHN model. Mechanical paw withdrawal thresholds were measured using an ascending series of von Frey filaments. Immunohistochemistry was used to detect the expression of P2X7R in nerve tissues. Western blot was used to determine the expression of endoplasmic reticulum (ER) stress and pyroptosis-related molecules. The expression of IL-1ß and IL-18 in tissue homogenate was detected by ELISA. The PHN rat has the lower paw withdrawal threshold, but higher expression of P2X7 in nerve tissues. And, endoplasmic reticulum stress was activated and pyroptosis was increased in PHN rats. BBG can decrease pain thresholds and reduce ER stress and pyroptosis in PHN rats. In addition, ER stress activator tunicamycin (TM) can reverse the effect of BBG on the paw withdrawal thresholds, endoplasmic reticulum stress, and pyroptosis. Therefore, P2X7 receptor antagonist BBG alleviates PHN by activating ER stress and reducing pyroptosis.


Subject(s)
Endoplasmic Reticulum Stress , Herpes Zoster/complications , Neuralgia, Postherpetic/prevention & control , Purinergic P2X Receptor Antagonists/pharmacology , Pyroptosis , Receptors, Purinergic P2X7/chemistry , Rosaniline Dyes/pharmacology , Animals , Herpes Zoster/virology , Herpesvirus 3, Human/pathogenicity , Indicators and Reagents/pharmacology , Neuralgia, Postherpetic/metabolism , Neuralgia, Postherpetic/pathology , Neuralgia, Postherpetic/virology , Rats , Rats, Wistar
6.
J Clin Microbiol ; 58(11)2020 10 21.
Article in English | MEDLINE | ID: mdl-32839250

ABSTRACT

The COVID-19 pandemic has necessitated a multifaceted rapid response by the scientific community, bringing researchers, health officials, and industry together to address the ongoing public health emergency. To meet this challenge, participants need an informed approach for working safely with the etiological agent, the novel human coronavirus SARS-CoV-2. Work with infectious SARS-CoV-2 is currently restricted to high-containment laboratories, but material can be handled at a lower containment level after inactivation. Given the wide array of inactivation reagents that are being used in laboratories during this pandemic, it is vital that their effectiveness is thoroughly investigated. Here, we evaluated a total of 23 commercial reagents designed for clinical sample transportation, nucleic acid extraction, and virus inactivation for their ability to inactivate SARS-CoV-2, as well as seven other common chemicals, including detergents and fixatives. As part of this study, we have also tested five filtration matrices for their effectiveness at removing the cytotoxic elements of each reagent, permitting accurate determination of levels of infectious virus remaining following treatment. In addition to providing critical data informing inactivation methods and risk assessments for diagnostic and research laboratories working with SARS-CoV-2, these data provide a framework for other laboratories to validate their inactivation processes and to guide similar studies for other pathogens.


Subject(s)
Betacoronavirus/drug effects , Indicators and Reagents/pharmacology , Virus Inactivation/drug effects , Animals , Betacoronavirus/isolation & purification , COVID-19 , COVID-19 Testing , Cell Survival/drug effects , Chlorocebus aethiops , Clinical Laboratory Techniques , Coronavirus Infections/diagnosis , Coronavirus Infections/virology , Filtration/instrumentation , Humans , Pandemics , Pneumonia, Viral/diagnosis , Pneumonia, Viral/virology , SARS-CoV-2 , Vero Cells
7.
Virol J ; 17(1): 163, 2020 10 23.
Article in English | MEDLINE | ID: mdl-33097081

ABSTRACT

BACKGROUND: Transmissible gastroenteritis virus (TGEV) causes enteric infection in piglets, characterized by vomiting, severe diarrhea and dehydration, and the mortality in suckling piglets is often high up to 100%. Vaccination is an effective measure to control the disease caused by TGEV. METHODS: In this study, cell-cultured TGEV HN-2012 strain was inactivated by formaldehyde (FA), ß-propiolactone (BPL) or binaryethylenimine (BEI), respectively. Then the inactivated TGEV vaccine was prepared with freund's adjuvant, and the immunization effects were evaluated in mice. The TGEV-specific IgG level was detected by ELISA. The positive rates of CD4+, CD8+, CD4+IFN-γ+, CD4+IL-4+ T lymphocytes were detected by flow cytometry assay. Lymphocyte proliferation assay and gross pathology and histopathology examination were also performed to assess the three different inactivating reagents in formulating TGEV vaccine. RESULTS: The results showed that the TGEV-specific IgG level in FA group (n = 17) was earlier and stronger, while the BEI group produced much longer-term IgG level. The lymphocyte proliferation test demonstrated that the BEI group had a stronger ability to induce spleen lymphocyte proliferation. The positive rates of CD4+ and CD8+ T lymphocyte subsets of peripheral blood lymphocyte in BEI group was higher than that in FA group and BPL groups by flow cytometry assay. The positive rate of CD4+IFN-γ+ T lymphocyte subset was the highest in the BPL group, and the positive rate of CD4+IL-4+ T lymphocyte subset was the highest in the FA group. There were no obvious pathological changes in the vaccinated mice and the control group after the macroscopic and histopathological examination. CONCLUSIONS: These results indicated that all the three experimental groups could induce cellular and humoral immunity, and the FA group had the best humoral immunity effect, while the BEI group showed its excellent cellular immunity effect.


Subject(s)
Antibodies, Viral/blood , Gastroenteritis, Transmissible, of Swine/prevention & control , Indicators and Reagents/pharmacology , Transmissible gastroenteritis virus/drug effects , Viral Vaccines/immunology , Virus Inactivation/drug effects , Animals , Female , Immunity, Cellular , Immunity, Humoral , Immunoglobulin G/blood , Indicators and Reagents/classification , Lymphocyte Activation , Mice , Mice, Inbred BALB C , Swine , T-Lymphocytes/immunology , Vaccines, Inactivated/administration & dosage , Vaccines, Inactivated/immunology , Viral Vaccines/administration & dosage
8.
Haemophilia ; 26(3): 543-552, 2020 May.
Article in English | MEDLINE | ID: mdl-32314511

ABSTRACT

INTRODUCTION: Recombinant factor IX Fc fusion protein (rFIXFc) is an extended half-life concentrate for the treatment of haemophilia B (HB). rFIXFc activity monitoring is crucial in several clinical situations. However, differences were observed between one-stage clotting (OSC) and chromogenic assays, but not for all factor IX (FIX) concentrations. AIMS: To compare rFIXFc measurements obtained using different instruments and common OSC and chromogenic asssays. METHODS: FIX:C measurements were performed in rFIXFc-spiked plasma aliquots (targeted FIX levels of 1.5, 1, 0.5, 0.2, 0.05, 0.02 and 0.01 IU/mL) and plasma samples collected from two patients with HB at various time points after rFIXFc infusion, using three instruments (STA-R MAX, ACLTOP700 and CS2100i) and common clotting and chromogenic FIX:C assays. RESULTS: The same reagent could give different FIX:C measurements when adapted to different instruments. Moreover, the same reagent/instrument combination could give different results depending of the FIX concentration. For OSC assays, only STA-Cephascreen on STA-R MAX and CS2100i, SynthAFax on ACLTOP 700 and Actin on CS2100i provided acceptable recoveries for all rFIXFc concentrations. The chromogenic assays ROX-FIX and Biophen FIX:C underestimated rFIXFc for concentrations lower than 0.05 and 0.2 IU/mL, respectively. CONCLUSIONS: Our study demonstrates that the same reagent adapted to different instruments could lead to different rFIXFc values. As rFIXFc under/overestimation could be associated with inappropriate treatment or biased calculation of pharmacokinetic parameters, the reagent/instrument combination used by haemostasis laboratories should be considered and regularly evaluated by external quality assessment programmes.


Subject(s)
Factor IX/pharmacology , Immunoglobulin Fc Fragments/pharmacology , Indicators and Reagents/pharmacology , Recombinant Fusion Proteins/pharmacology , Adolescent , Female , Humans , Male
9.
J Med Primatol ; 49(1): 16-25, 2020 02.
Article in English | MEDLINE | ID: mdl-31674042

ABSTRACT

BACKGROUND: Gastrointestinal (GI) hemorrhage accompanies several common diseases of rhesus macaques (Macaca mulatta). Guaiac fecal occult blood testing (gFOBT) is a non-invasive means to detect such bleeding in several species; however, there are currently no data indicating reliability of this test to detect GI hemorrhage in macaques. METHODS: We evaluated sensitivity and specificity of gFOBT to detect simulated and biopsy-associated bleeding in the stomach, duodenum, and colon of 15 rhesus macaques. Fecal samples were analyzed via gFOBT for 72 hours. RESULTS: Guaiac fecal occult blood testing was more sensitive to detect lower vs upper GI bleeding; sensitivity was volume-dependent in the upper GI tract. Single-test specificity was 95.2%. Repeated fecal collections increased gFOBT sensitivity without affecting specificity. CONCLUSIONS: Guaiac fecal occult blood testing is a useful screening test for both upper and lower GI bleeding in rhesus macaques. For highest sensitivity, gFOBT should be performed on three fecal samples collected 24 hours apart.


Subject(s)
Gastrointestinal Hemorrhage/veterinary , Guaiac/pharmacology , Indicators and Reagents/pharmacology , Macaca mulatta , Monkey Diseases/diagnosis , Occult Blood , Animals , Gastrointestinal Hemorrhage/diagnosis , Male , Reproducibility of Results , Sensitivity and Specificity
10.
Graefes Arch Clin Exp Ophthalmol ; 258(5): 1095-1102, 2020 May.
Article in English | MEDLINE | ID: mdl-31900640

ABSTRACT

PURPOSE: In Graves' orbitopathy (GO), hyaluronan secreted by orbital fibroblasts contributes to orbital tissue expansion. The goal of this research was to evaluate the potential benefit of 4-methylumbelliferone (4-MU), a hyaluronan synthase (HAS) inhibitor, in primary cultured orbital fibroblasts from Graves' orbitopathy. METHODS: We assessed the viability of orbital fibroblasts using a live/dead cell assay. Hyaluronan synthesis was evaluated by enzyme-linked immunosorbent assay (ELISA) and quantitative real-time PCR (qPCR). Adipogenesis was assessed by Oil Red O staining and qPCR of adipogenic transcription factors. RESULTS: In orbital fibroblasts treated with 4-MU (up to 1000 µM), cell viability was preserved by 90%. 4-MU significantly inhibited HAS gene expression and hyaluronan production (*P < 0.05). With respect to adipogenesis, 4-MU suppressed the accumulation of lipids and reduced the number of adipocytes, while decreasing expression of adipogenic transcription factors. CONCLUSIONS: 4-MU represents a promising new therapeutic agent for GO based on its ability to inhibit hyaluronan production and adipogenesis, without decreasing cell viability.


Subject(s)
Adipogenesis/drug effects , Fibroblasts/drug effects , Graves Ophthalmopathy/drug therapy , Hyaluronic Acid/metabolism , Hymecromone/pharmacology , Indicators and Reagents/pharmacology , Orbit/cytology , Adult , Cell Proliferation , Cell Survival , Cells, Cultured , Enzyme-Linked Immunosorbent Assay , Female , Fibroblasts/metabolism , Graves Ophthalmopathy/metabolism , Humans , Hyaluronan Synthases/antagonists & inhibitors , Male , Middle Aged , Real-Time Polymerase Chain Reaction
11.
J Cell Mol Med ; 23(4): 2995-3009, 2019 04.
Article in English | MEDLINE | ID: mdl-30756474

ABSTRACT

Previous studies have suggested that the cellular Ca2+ and iron homeostasis, which can be regulated by mitochondrial calcium uniporter (MCU), is associated with oxidative stress, apoptosis and many neurological diseases. However, little is known about the role of MCU-mediated Ca2+ and iron accumulation in traumatic brain injury (TBI). Under physiological conditions, MCU can be inhibited by ruthenium red (RR) and activated by spermine (Sper). In the present study, we used RR and Sper to reveal the role of MCU in mouse and neuron TBI models. Our results suggested that the Ca2+ and iron concentrations were obviously increased after TBI. In addition, TBI models showed a significant generation of reactive oxygen species (ROS), decrease in adenosine triphosphate (ATP), deformation of mitochondria, up-regulation of deoxyribonucleic acid (DNA) damage and increase in apoptosis. Blockage of MCU by RR prevented Ca2+ and iron accumulation, abated the level of oxidative stress, improved the energy supply, stabilized mitochondria, reduced DNA damage and decreased apoptosis both in vivo and in vitro. Interestingly, Sper did not increase cellular Ca2+ and iron concentrations, but suppressed the Ca2+ and iron accumulation to benefit the mice in vivo. However, Sper had no significant impact on TBI in vitro. Taken together, our data demonstrated for the first time that blockage of MCU-mediated Ca2+ and iron accumulation was essential for TBI. These findings indicated that MCU could be a novel therapeutic target for treating TBI.


Subject(s)
Brain Injuries, Traumatic/metabolism , Calcium Channels/metabolism , Calcium/metabolism , Iron/metabolism , Mitochondrial Proteins/metabolism , Neurons/metabolism , Oxidative Stress , Reactive Oxygen Species/metabolism , Animals , Apoptosis , Brain Injuries, Traumatic/drug therapy , Brain Injuries, Traumatic/pathology , Calcium Channels/genetics , Homeostasis , Indicators and Reagents/pharmacology , Male , Mice , Mice, Inbred ICR , Mitochondria/drug effects , Mitochondria/metabolism , Mitochondria/pathology , Mitochondrial Proteins/genetics , Neurons/drug effects , Neurons/pathology , Ruthenium Red/pharmacology , Spermine/pharmacology
12.
J Biol Chem ; 293(10): 3700-3709, 2018 03 09.
Article in English | MEDLINE | ID: mdl-29330302

ABSTRACT

Breast cancer development and progression are influenced by insulin-like growth factor receptor 1 (IGF1R) and insulin receptor (InsR) signaling, which drive cancer phenotypes such as cell growth, proliferation, and migration. IGF1R and InsR form IGF1R/InsR hybrid receptors (HybRs) consisting of one molecule of IGF1R and one molecule of InsR. The specific signaling and functions of HybR are largely unknown, as HybR is activated by both IGF1 and insulin, and no cellular system expresses HybR in the absence of holo-IGF1R or holo-InsR. Here we studied the role of HybR by constructing inducible chimeric receptors and compared HybR signaling with that of holo-IGF1R and holo-InsR. We cloned chemically inducible chimeric IGF1R and InsR constructs consisting of the extracellular domains of the p75 nerve growth factor receptor fused to the intracellular ß subunit of IGF1R or InsR and a dimerization domain. Dimerization with the drugs AP20187 or AP21967 allowed specific and independent activation of holo-IGF1R, holo-InsR, or HybR, resulting in activation of the PI3K pathway. Holo-IGF1R and HybR both promoted cell proliferation and glucose uptake, whereas holo-InsR only promoted glucose uptake, and only holo-IGF1R showed anti-apoptotic effects. We also found that the three receptors differentially regulated gene expression: holo-IGF1R and HybR up-regulated EGR3; holo-InsR specifically down-regulated JUN and BCL2L1; holo-InsR down-regulated but HybR up-regulated HK2; and HybR specifically up-regulated FHL2, ITGA6, and PCK2. Our findings suggest that, when expressed and activated in mammary epithelial cells, HybR acts in a manner similar to IGF1R and support further investigation of the role of HybR in breast cancer.


Subject(s)
Breast Neoplasms/metabolism , Mammary Glands, Human/metabolism , Models, Molecular , Neoplasm Proteins/metabolism , Receptor, Insulin/metabolism , Receptors, Somatomedin/metabolism , Animals , Breast Neoplasms/pathology , Cell Line, Transformed , Cell Proliferation/drug effects , Female , Humans , Indicators and Reagents/pharmacology , Insulin/metabolism , Insulin-Like Growth Factor I/metabolism , MCF-7 Cells , Mammary Glands, Human/drug effects , Mammary Glands, Human/pathology , Mice , Neoplasm Proteins/agonists , Neoplasm Proteins/chemistry , Neoplasm Proteins/genetics , Peptide Fragments/chemistry , Peptide Fragments/genetics , Peptide Fragments/metabolism , Protein Interaction Domains and Motifs , Protein Multimerization/drug effects , Receptor, Insulin/agonists , Receptor, Insulin/chemistry , Receptor, Insulin/genetics , Receptors, Somatomedin/agonists , Receptors, Somatomedin/chemistry , Receptors, Somatomedin/genetics , Recombinant Fusion Proteins/chemistry , Recombinant Fusion Proteins/metabolism , Signal Transduction/drug effects , Sirolimus/analogs & derivatives , Sirolimus/pharmacology , Tacrolimus/analogs & derivatives , Tacrolimus/pharmacology
13.
Anal Chem ; 91(10): 6577-6584, 2019 05 21.
Article in English | MEDLINE | ID: mdl-31025855

ABSTRACT

Protein footprinting coupled with mass spectrometry is being increasingly used for the study of protein interactions and conformations. The hydroxyl radical footprinting method, fast photochemical oxidation of proteins (FPOP), utilizes hydroxyl radicals to oxidatively modify solvent accessible amino acids. Here, we describe the further development of FPOP for protein structural analysis in vivo (IV-FPOP) with Caenorhabditis elegans. C. elegans, part of the nematode family, are used as model systems for many human diseases. The ability to perform structural studies in these worms would provide insight into the role of structure in disease pathogenesis. Many parameters were optimized for labeling within the worms including the microfluidic flow system and hydrogen peroxide concentration. IV-FPOP was able to modify several hundred proteins in various organs within the worms. The method successfully probed solvent accessibility similarily to in vitro FPOP, demonstrating its potential for use as a structural technique in a multiorgan system. The coupling of the method with mass spectrometry allows for amino-acid-residue-level structural information, a higher resolution than currently available in vivo methods.


Subject(s)
Caenorhabditis elegans/chemistry , Protein Footprinting/methods , Proteins/analysis , Animals , Caenorhabditis elegans/drug effects , Chromatography, Liquid , Hydrogen Peroxide/pharmacology , Hydrogen Peroxide/toxicity , Indicators and Reagents/pharmacology , Indicators and Reagents/toxicity , Oxidation-Reduction , Proteins/chemistry , Tandem Mass Spectrometry
14.
Exp Eye Res ; 181: 157-162, 2019 04.
Article in English | MEDLINE | ID: mdl-30716329

ABSTRACT

To assess the cellular stress evoked by exposure of Brilliant Blue-G (BBG), adult retinal pigment epithelial (ARPE-19) cells were treated with various dilutions of BBG in balanced salt solution plus (BSS-PLUS) with and without endoillumination (Alcon Constellation Vision System). The treatments lasted for acute periods of 2 and 5 min. MTT and presto blue assays were performed to assess the changes in cell viability; reactive oxygen species (ROS) production was quantified by DCFDA (dichlorofluorescin diacetate) assay, and the expression of inflammatory stress and endoplasmic reticulum (ER) genes were quantified by qPCR. We observed no reduction in cell viability at 2 min of dye treatment with and without endoillumination while at 5 min exposure, a reduction in cell viability at all concentrations of the dye was observed compared to control. Though there was an increase in ROS with endoillumination, it was insignificant. There was no change in the mRNA expression of TNF-α while that of GRP78, and inflammatory genes viz. IL-8, IL-1ß showed a significant increase at 0.5 mg/ml dye with endoillumination. BBG reduced cell viability with increasing concentration and time. The undiluted concentration of the dye results in inflammatory stress compared to the diluted formulations. Interestingly, increased GRP78 at undiluted concentration indicates a protective response in cells exposed to light. However, further studies are needed to evaluate the effect of cellular stress on the visual outcome. We infer that the commercially available formulation of BBG is safe for the RPE, at the recommended dose for a short duration however its toxicity to other cell types need to be addressed.


Subject(s)
Endoplasmic Reticulum Stress/drug effects , Epithelial Cells/drug effects , Retinal Diseases/metabolism , Retinal Pigment Epithelium/drug effects , Rosaniline Dyes/pharmacology , Apoptosis , Cell Survival/drug effects , Cells, Cultured , Cytokines/metabolism , Endoplasmic Reticulum Chaperone BiP , Epithelial Cells/metabolism , Humans , Indicators and Reagents/pharmacology , Reactive Oxygen Species/metabolism , Retinal Diseases/pathology , Retinal Pigment Epithelium/pathology , Vitreoretinal Surgery
15.
J Endocrinol Invest ; 42(11): 1329-1335, 2019 Nov.
Article in English | MEDLINE | ID: mdl-31102255

ABSTRACT

PURPOSE: Perfluorinated chemicals are widespread pollutants persistent in the environment with links to some major health issues. The two main compounds, perfluoro-octanoic acid (PFOA) and perfluoro-alkyl sulphonate (PFOS), were recently classified as carcinogenetic and thus their use has been restricted. Short-chain PFCs were recently developed as an alternative, but no data regarding the possible endocrine toxicities of these compounds are available. Aim of this study was to investigate whether short-chain PFCs could jeopardize thyroid cell viability and/or interfere with the functional effect TSH. METHODS: Fisher rat thyroid line-5 (FRTL-5) was treated with increasing concentrations of PFOA, PFOS, perfluorobutanesulfonic acid (PFBS), perfluorobutanoic acid (PFBA), pentafluoropropionic anhydride (PFPA), perfluoropentanoic acid (PFPeA) to evaluate modifications in cell viability and TSH-stimulated cAMP production. RESULTS: Neither long nor short-chain PFCs affected cell viability (apart from PFOS 100 µM), or interfered with cAMP production. CONCLUSIONS: The results of the present study demonstrate for the first time that short-chain PFCs have no acute cytotoxic effect on thyroid cells in vitro and that cAMP production is not modulated by any of the tested PFCs.


Subject(s)
Cyclic AMP/metabolism , Environmental Pollutants/pharmacology , Fluorocarbons/pharmacology , Sulfonic Acids/pharmacology , Thyroid Gland/metabolism , Thyrotropin/pharmacology , Animals , Cell Survival , Cells, Cultured , Indicators and Reagents/pharmacology , Rats , Thyroid Gland/drug effects
16.
Adv Neonatal Care ; 19(6): E3-E10, 2019 Dec.
Article in English | MEDLINE | ID: mdl-31246615

ABSTRACT

BACKGROUND: Despite availability of rapid fungal potassium hydroxide (KOH) tests, many care providers rely on visual assessment to determine the diagnosis of monilial diaper dermatitis (MDD). PURPOSE: To determine whether a KOH test, when MDD is suspected, would result in more accurate diagnoses, with decreased antifungal medication prescription and exposure. METHODS: Quality improvement project from 2016 through 2017 with protocol implemented in 2017 for treatment of MDD after positive KOH testing. If monilial rash suspected, after 2 negative KOH tests, then antifungal ordered (considered false negative). χ testing and cost determination were performed. SAMPLE: Neonates in 2 level III neonatal intensive care units. OUTCOME VARIABLES: KOH test results, use of antifungal medication, and cost. RESULTS: The patient census included 1051 and 1015 patients in the year before and after the protocol initiation. The medical orders for antifungal medication decreased from 143 to 36 (P < .001; 95% odds ratio confidence interval, 2.24-4.38). There was a 75% reduction in both use and cost, as charged, of antifungal agents. Overall charges, including KOH test costs, decreased by 12%. Three infants received multiple negative KOH tests, then a positive one. These met the definition of false-negative tests, per protocol. There were no cases of fungal sepsis. IMPLICATIONS FOR PRACTICE: Use of a quality improvement protocol, in which the use of KOH testing is required, before antifungal agents are prescribed, results in decreased exposure and costs. IMPLICATIONS FOR RESEARCH: To test the feasibility of bedside "point-of-care" KOH testing, and whether KOH testing and reduced antifungal medication use affects antimicrobial resistance or invasive fungal sepsis.


Subject(s)
Antifungal Agents , Candidiasis, Cutaneous , Diaper Rash , Hydroxides/pharmacology , Medical Overuse , Potassium Compounds/pharmacology , Antifungal Agents/economics , Antifungal Agents/therapeutic use , Candidiasis, Cutaneous/diagnosis , Candidiasis, Cutaneous/etiology , Cost-Benefit Analysis , Diaper Rash/diagnosis , Diaper Rash/microbiology , Diaper Rash/prevention & control , Female , Humans , Indicators and Reagents/pharmacology , Infant, Newborn , Male , Medical Overuse/economics , Medical Overuse/prevention & control , Mycology/methods , Quality Improvement
17.
Hippocampus ; 28(7): 523-535, 2018 07.
Article in English | MEDLINE | ID: mdl-29663578

ABSTRACT

Recent genetic tools have allowed researchers to visualize and manipulate memory traces (i.e., engrams) in small brain regions. However, the ultimate goal is to visualize memory traces across the entire brain in order to better understand how memories are stored in neural networks and how multiple memories may coexist. Intact tissue clearing and imaging is a new and rapidly growing area of focus that could accomplish this task. Here, we utilized the leading protocols for whole-brain clearing and applied them to the ArcCreERT2 mice, a murine line that allows for the indelible labeling of memory traces. We found that CLARITY and PACT greatly distorted the tissue, and iDISCO quenched enhanced yellow fluorescent protein (EYFP) fluorescence and hindered immunolabeling. Alternative clearing solutions, such as tert-Butanol, circumvented these harmful effects, but still did not permit whole-brain immunolabeling. CUBIC and CUBIC with Reagent-1A produced improved antibody penetration and preserved EYFP fluorescence, but also did not allow for whole-brain memory trace visualization. Modification of CUBIC with Reagent-1A resulted in EYFP fluorescence preservation and immunolabeling of the immediate early gene (IEG) Arc in deep brain areas; however, optimized memory trace labeling still required tissue slicing into mm-thick tissue sections. In summary, our data show that CUBIC with Reagent-1A* is the ideal method for reproducible clearing and immunolabeling for the visualization of memory traces in mm-thick tissue sections from ArcCreERT2 mice.


Subject(s)
AIDS-Related Complex/metabolism , Brain/metabolism , Memory/physiology , AIDS-Related Complex/genetics , Animals , Brain/anatomy & histology , Channelrhodopsins/genetics , Channelrhodopsins/metabolism , Conditioning, Operant , Estrogen Antagonists/pharmacology , Fear , Immunohistochemistry , Indicators and Reagents/pharmacology , Luminescent Proteins/genetics , Luminescent Proteins/metabolism , Mice , Mice, Transgenic , Microscopy, Confocal , Receptors, Estrogen/genetics , Receptors, Estrogen/metabolism , Tamoxifen/analogs & derivatives , Tamoxifen/pharmacology
18.
J Reprod Dev ; 64(2): 199-202, 2018 Apr 13.
Article in English | MEDLINE | ID: mdl-29353869

ABSTRACT

Bovine preimplantation embryos exhibit dramatic biological changes between before and after the 8-16-cell stage. Here we report a simple lipofection method to transfect siRNA into bovine 8-16-cell stage embryos using zona removal and the well-of-the-well (WOW) culture system. Bovine one-cell embryos produced in vitro were freed from the zona pellucida and cultured up to the 8-16-cell stage in WOW dishes. The 8-16-cell embryos were lipofected with siRNA and the transfection efficiency was assessed at 48 h of transfection. Lipofection with a red fluorescent non-targeting siRNA revealed the importance of zona removal for transfection of siRNA into embryos. Using this method, we knocked down the methionine adenosyltransferase 2A (MAT2A) gene, achieving a significant reduction in MAT2A expression (P < 0.05) concomitant with the marked inhibition of blastocyst development. Our proposed method, tentatively named 'Octo-lipofection', may be useful to analyze gene functions in bovine preimplantation embryos without expensive equipment and skill-intensive techniques.


Subject(s)
Ectogenesis , Morula/metabolism , RNA Interference , RNA, Small Interfering/metabolism , Transfection/methods , Animals , Cattle , Ectogenesis/drug effects , Embryo Culture Techniques , Female , Gene Expression Regulation, Developmental/drug effects , Humans , Indicators and Reagents/pharmacology , Lipids/pharmacology , Male , Methionine Adenosyltransferase/antagonists & inhibitors , Methionine Adenosyltransferase/genetics , Methionine Adenosyltransferase/metabolism , Morula/drug effects , Transfection/veterinary , Zona Pellucida/physiology
19.
Ophthalmologica ; 239(2-3): 167-175, 2018.
Article in English | MEDLINE | ID: mdl-29393272

ABSTRACT

PURPOSE: To report on the combined use of trypan blue (TB) and brilliant blue G (BBG) for staining the epiretinal membrane (ERM) and internal limiting membrane (ILM) during vitrectomy and to describe the histopathological findings. METHODS: 10 surgical specimens were removed from 10 eyes with macular pucker during vitrectomy using a commercially available combination of TB and BBG for ERM and ILM staining and peeling. Specimens were evaluated using light and transmission electron microscopy. RESULTS: In all cases the combination of TB and BBG was useful for identifying and delineating ERM and ILM. No complications related to the use of the dye were observed during or after surgery. Glial cells were present in all specimens. Hyalocytes were observed in 6 cases and myofibroblasts in 3 of them. In 7 cases native vitreous collagen fibrils were found on the ILM, while in 5 specimens newly formed collagen was present. No clinical evidence of toxicity was observed during the 3-month follow-up. CONCLUSION: The combined use of TB and BBG appeared to be very useful intraoperatively to improve the visualization of ERM and ILM, thus facilitating their complete removal. Anatomical and histopathological findings demonstrated the safety and the efficacy of this vital dye.


Subject(s)
Basement Membrane/surgery , Epiretinal Membrane/surgery , Macula Lutea/ultrastructure , Rosaniline Dyes/pharmacology , Trypan Blue/pharmacology , Visual Acuity , Vitrectomy/methods , Aged , Aged, 80 and over , Basement Membrane/ultrastructure , Coloring Agents/therapeutic use , Epiretinal Membrane/diagnosis , Epiretinal Membrane/physiopathology , Female , Follow-Up Studies , Humans , Indicators and Reagents/pharmacology , Intraoperative Period , Male , Microscopy, Electron, Transmission , Prospective Studies , Single-Blind Method , Time Factors
20.
Graefes Arch Clin Exp Ophthalmol ; 255(3): 485-492, 2017 Mar.
Article in English | MEDLINE | ID: mdl-27604762

ABSTRACT

PURPOSE: To compare the effects of indocyanine green (ICG)-, brilliant blue G (BBG)-, or triamcinolone acetonide (TA)-assisted internal limiting membrane (ILM) peeling during macular hole (MH) surgery on the different components of the focal macular electroretinograms (fmERGs). METHODS: Forty-eight eyes of 48 patients with a macular hole were randomly divided into those undergoing ICG-, BBG-, or TA-assisted vitrectomy (n = 16 for each group). All patients had combined cataract and macular hole surgery with ILM peeling. The fmERGs were recorded before, and 1, 3, 6, 9, and 12 months postoperatively. The amplitudes and implicit times of the a- and b-waves, the amplitudes of the sum of the oscillatory potentials (ΣOPs), and the photopic negative responses (PhNRs) were analyzed. RESULTS: The amplitudes of all of the components of the fmERGs gradually increased with time after surgery (P < 0.005). The implicit times of the a- and b-waves were significantly prolonged at 1 month (P < 0.01) and then gradually returned to the baseline times. No significant differences were found in these changes among the groups. In pooled data from the 48 patients, the PhNR amplitude increased more than the a- and b-waves and the ΣOPs amplitudes at every time point after 3 months (P < 0.005). CONCLUSIONS: The lack of significant differences on the different components of the fmERGs indicates that none of the three agents was toxic to the macula. After closure of a MH, the function of the retinal ganglion cells may recover more than that of the other neural elements in the macular area.


Subject(s)
Electroretinography/methods , Indocyanine Green/pharmacology , Macula Lutea/physiopathology , Retinal Perforations/surgery , Rosaniline Dyes/pharmacology , Triamcinolone Acetonide/administration & dosage , Vitrectomy/methods , Basement Membrane/surgery , Coloring Agents/pharmacology , Electroretinography/drug effects , Female , Fluorescein Angiography , Follow-Up Studies , Fundus Oculi , Glucocorticoids/administration & dosage , Humans , Indicators and Reagents/pharmacology , Intraoperative Period , Macula Lutea/pathology , Male , Middle Aged , Retinal Ganglion Cells/drug effects , Retinal Ganglion Cells/pathology , Retinal Perforations/diagnosis , Retinal Perforations/drug therapy , Retrospective Studies , Time Factors , Tomography, Optical Coherence , Treatment Outcome
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