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1.
Cell ; 173(3): 693-705.e22, 2018 04 19.
Article in English | MEDLINE | ID: mdl-29677513

ABSTRACT

Liquid-liquid phase separation (LLPS) is believed to underlie formation of biomolecular condensates, cellular compartments that concentrate macromolecules without surrounding membranes. Physical mechanisms that control condensate formation/dissolution are poorly understood. The RNA-binding protein fused in sarcoma (FUS) undergoes LLPS in vitro and associates with condensates in cells. We show that the importin karyopherin-ß2/transportin-1 inhibits LLPS of FUS. This activity depends on tight binding of karyopherin-ß2 to the C-terminal proline-tyrosine nuclear localization signal (PY-NLS) of FUS. Nuclear magnetic resonance (NMR) analyses reveal weak interactions of karyopherin-ß2 with sequence elements and structural domains distributed throughout the entirety of FUS. Biochemical analyses demonstrate that most of these same regions also contribute to LLPS of FUS. The data lead to a model where high-affinity binding of karyopherin-ß2 to the FUS PY-NLS tethers the proteins together, allowing multiple, distributed weak intermolecular contacts to disrupt FUS self-association, blocking LLPS. Karyopherin-ß2 may act analogously to control condensates in diverse cellular contexts.


Subject(s)
Active Transport, Cell Nucleus , Nuclear Localization Signals , RNA-Binding Protein FUS/chemistry , beta Karyopherins/chemistry , Binding Sites , Frontotemporal Lobar Degeneration/metabolism , Humans , Karyopherins/metabolism , Light , Liquid-Liquid Extraction , Macromolecular Substances , Magnetic Resonance Spectroscopy , Mutation , Nephelometry and Turbidimetry , Protein Binding , Protein Domains , RNA/chemistry , Scattering, Radiation , Temperature
2.
J Proteome Res ; 23(7): 2598-2607, 2024 Jul 05.
Article in English | MEDLINE | ID: mdl-38965919

ABSTRACT

To our knowledge, calibration curves or other validations for thousands of SomaScan aptamers are not publicly available. Moreover, the abundance of urine proteins obtained from these assays is not routinely validated with orthogonal methods (OMs). We report an in-depth comparison of SomaScan readout for 23 proteins in urine samples from patients with diabetic kidney disease (n = 118) vs OMs, including liquid chromatography-targeted mass spectrometry (LC-MS), ELISA, and nephelometry. Pearson correlation between urine abundance of the 23 proteins from SomaScan 3.2 vs OMs ranged from -0.58 to 0.86, with a median (interquartile ratio, [IQR]) of 0.49 (0.18, 0.53). In multivariable linear regression, the SomaScan readout for 6 of the 23 examined proteins (26%) was most strongly associated with the OM-derived abundance of the same (target) protein. For 3 of 23 (13%), the SomaScan and OM-derived abundance of each protein were significantly associated, but the SomaScan readout was more strongly associated with OM-derived abundance of one or more "off-target" proteins. For the remaining 14 proteins (61%), the SomaScan readouts were not significantly associated with the OM-derived abundance of the targeted proteins. In 6 of the latest group, the SomaScan readout was not associated with urine abundance of any of the 23 quantified proteins. To sum, over half of the SomaScan results could not be confirmed by independent orthogonal methods.


Subject(s)
Diabetic Nephropathies , Humans , Diabetic Nephropathies/urine , Chromatography, Liquid/methods , Male , Female , Middle Aged , Enzyme-Linked Immunosorbent Assay , Proteomics/methods , Mass Spectrometry/methods , Aged , Nephelometry and Turbidimetry , Biomarkers/urine , Proteinuria/urine
3.
Yeast ; 41(5): 307-314, 2024 May.
Article in English | MEDLINE | ID: mdl-38380872

ABSTRACT

Fitness in micro-organisms can be proxied by growth parameters on different media and/or temperatures. This is achieved by measuring optical density at 600 nm using a spectrophotometer, which measures the effect of absorbance and side scattering due to turbidity of cells suspensions. However, when growth kinetics must be monitored in many 96-well plates at the same time, buying several 96-channel spectrophotometers is often beyond budgets. The MiniRead device presented here is a simple and inexpensive do-it-yourself 96-well temperature-controlled turbidimeter designed to measure the interception of white light via absorption or side scattering through liquid culture medium. Turbidity is automatically recorded in each well at regular time intervals for up to several days or weeks. Output tabulated text files are recorded into a micro-SD memory card to be easily transferred to a computer. We propose also an R package which allows (1) to compute the nonlinear calibration curves required to convert raw readings into cell concentration values, and (2) to analyze growth kinetics output files to automatically estimate proxies of growth parameters such as lag time, maximum growth rate, or cell concentration at the plateau.


Subject(s)
Nephelometry and Turbidimetry , Kinetics , Nephelometry and Turbidimetry/instrumentation , Culture Media/chemistry , Spectrophotometry/instrumentation
4.
Clin Transplant ; 38(10): e15471, 2024 Oct.
Article in English | MEDLINE | ID: mdl-39324931

ABSTRACT

INTRODUCTION: A limited sampling strategy (LSS) for estimating the area under the plasma concentration-time curve (AUC0-12) of the immunosuppressant mycophenolic acid (MPA) is used for therapeutic drug monitoring (TDM) in clinical practice. Our study delves into the applicability of the MPA AUC0-12 LSS, originally developed using particle-enhanced turbidimetric inhibition immunoassay (PETINIA) measurements, to those obtained via high-performance liquid chromatography with ultraviolet detection (HPLC-UV). METHODS: We developed an LSS for estimating MPA AUC0-12 based on PETINIA measurements in 32 adult kidney transplant patients who were receiving mycophenolate mofetil. Validation of this strategy was conducted in an additional 14 adult kidney transplant patients (validation sets) through measurements obtained by both PETINIA and HPLC-UV. Predictive performance was assessed using mean absolute error (MAE), root mean squared error (RMSE), and "good guess" defined as predicted AUC within observed AUC ± 15%. RESULTS: The three time point equation (0, 2, and 6 h) emerged as optimal for estimating MPA AUC0-12, balancing predictive performance and usefulness in clinical settings. In validation sets, the coefficient of determination for observed versus predicted AUC0-12 was consistent between PETINIA (0.978) and HPLC-UV (0.958) measurements. Comparable MAE, RMSE, and "good guess" outcomes were observed for PETINIA (6.4%, 8.1%, and 85.7%, respectively) and HPLC-UV (7.6%, 9.4%, and 85.7%, respectively) measurements. CONCLUSION: Our findings support the application of the MPA AUC0-12 LSS, originally developed using PETINIA measurements, to those obtained via HPLC-UV.


Subject(s)
Drug Monitoring , Immunosuppressive Agents , Kidney Transplantation , Mycophenolic Acid , Humans , Mycophenolic Acid/blood , Mycophenolic Acid/therapeutic use , Mycophenolic Acid/pharmacokinetics , Chromatography, High Pressure Liquid , Female , Male , Middle Aged , Drug Monitoring/methods , Immunosuppressive Agents/blood , Immunosuppressive Agents/pharmacokinetics , Immunosuppressive Agents/therapeutic use , Adult , Immunoassay/methods , Nephelometry and Turbidimetry , Area Under Curve , Prognosis , Follow-Up Studies , Aged
5.
J Clin Lab Anal ; 38(8): e25033, 2024 Apr.
Article in English | MEDLINE | ID: mdl-38563457

ABSTRACT

BACKGROUND: Detection of IgG subclasses (IgGSc) is vital for the diagnosis and management of disease, especially IgG4-related diseases (IgG4-RD). This study aimed to evaluate the performances of the chemiluminescent immunoassay (CLIA) for detecting IgGSc and diagnosing IgG4-RD by IgGSc. METHODS: A total of 40 individuals with IgG4-RD, 40 with primary Sjogren's syndrome (pSS), and 40 healthy controls (HCs) were enrolled. Serum samples were collected for the simultaneous detection of IgG1, IgG2, IgG3, and IgG4 by the Siemens immunonephelometric assay and the CLIA. The correlation analysis was performed, and diagnostic value was analyzed by the receiver operating characteristic (ROC) curve. RESULTS: Patients with IgG4-RD had higher IgG4 (p < 0.001) and lower IgG1 (p < 0.001) than those with pSS, and HC. The results by the Siemens immunonephelometric assay and the CLIA showed a strong correlation in detecting IgG1, IgG2, IgG3, and IgG4 (r = 0.937, r = 0.847, r = 0.871, r = 0.990, all p < 0.001, respectively). The sum of IgG1, IgG2, IgG3, and IgG4 using two assays strongly correlated with total IgG by the IMMAGE 800 (r = 0.866, r = 0.811, both p < 0.001, respectively). For discriminating IgG4-RD from pSS and HC, no significant differences were observed in CLIA IgG4 and Siemens immunonephelometric assay IgG4 (z = 0.138, p = 0.891), which provided the area under the curves (AUCs) of 0.951 (p < 0.001) and 0.950 (p < 0.001), respectively. The AUCs of CLIA IgG1 and Siemens immunonephelometric assay IgG1 in distinguishing pSS from IgG4-RD and HC were 0.761 (p < 0.001) and 0.765 (p < 0.001), respectively, with no significant differences (z = 0.228, p = 0.820). CONCLUSIONS: The CLIA and the Siemens immunonephelometric assay appeared to have good consistency with comparable diagnostic value in detecting IgGSc, especially IgG4, and IgG1 that can accurately identify IgG4-RD or pSS in clinical practice.


Subject(s)
Immunoglobulin G , Luminescent Measurements , Humans , Immunoglobulin G/blood , Female , Male , Middle Aged , Immunoassay/methods , Luminescent Measurements/methods , Adult , ROC Curve , Nephelometry and Turbidimetry/methods , Case-Control Studies , China , Aged , Sjogren's Syndrome/blood , Sjogren's Syndrome/diagnosis , Asian People , Immunoglobulin G4-Related Disease/blood , Immunoglobulin G4-Related Disease/diagnosis , East Asian People
6.
Hemoglobin ; 48(3): 209-211, 2024 May.
Article in English | MEDLINE | ID: mdl-39103306

ABSTRACT

Hemoglobin Strasbourg is a rare high oxygen affinity hemoglobin variant which leads to secondary erythrocytosis. This variant is caused by a HBB gene mutation c.71T > A resulting in an amino acid exchange on position 23 of the ß globin chain (p.Val23Asp.). The influence of Hb Strasbourg on HbA1c measurement has not been studied to date. For patients with hemoglobin variants it is important to know whether possible interferences exist with the measurement of HbA1c. We therefore investigated the influence of Hb Strasbourg on HbA1c measurement with two different HPLC (high-performance liquid chromatography) systems and one turbidimetric immunoassay in two non-diabetic brothers who are heterozygous carriers of Hb Strasbourg. The examined tests are all used in routine diagnostics. In the case of Hb Strasbourg, the HbA1c measured by HPLC showed lower results than those obtained by the immunoassay. We conclude that HbA1c is underestimated when measured with these methods as glycated Hb Strasbourg is most likely not co-eluting with HbA1c in HPLC.


Subject(s)
Glycated Hemoglobin , Hemoglobins, Abnormal , Humans , Glycated Hemoglobin/analysis , Hemoglobins, Abnormal/genetics , Chromatography, High Pressure Liquid , Male , Immunoassay/methods , Oxygen/metabolism , Nephelometry and Turbidimetry
7.
J Aquat Anim Health ; 36(3): 205-219, 2024 Sep.
Article in English | MEDLINE | ID: mdl-38923038

ABSTRACT

OBJECTIVE: The World Organization for Animal Health still regulates the infectious hypodermal and hematopoietic necrosis virus (IHHNV) in shrimp. The existing disease identification approach is time consuming, necessitates expensive equipment, and requires specialized expertise, thereby limiting the accessibility of shrimp disease screening on farms. Loop-mediated isothermal amplification (LAMP) is recognized for its ability to detect inhibitory substances with high sensitivity and specificity. METHODS: We developed a real-time triplex LAMP assay that combines the simplicity of point-of-care testing with the accuracy of a turbidimeter. Using a set of three LAMP primers, our technology enables rapid DNA amplification in a single reaction within 45 min and with a low detection limit (10 copies/reaction). RESULT: We tested 192 shrimp samples from different sources and demonstrated the clinical utility of our method, achieving 100% specificity (95% confidence interval = 93.40-100.00%), 100% sensitivity (97.36-100.00%), and 100% accuracy (98.10-100.00%) in detecting IHHNV DNA, with a high Cohen's kappa value (1) compared to the standard quantitative polymerase chain reaction assay. CONCLUSION: The high technology readiness level of our method makes it a versatile platform for any real-time LAMP assay, and its low cost and simplicity make it well suited for fast deployment and use in shrimp farming.


Subject(s)
Densovirinae , Nucleic Acid Amplification Techniques , Penaeidae , Sensitivity and Specificity , Animals , Nucleic Acid Amplification Techniques/methods , Nucleic Acid Amplification Techniques/veterinary , Penaeidae/virology , Densovirinae/isolation & purification , Densovirinae/genetics , Nephelometry and Turbidimetry/veterinary , Nephelometry and Turbidimetry/methods , Molecular Diagnostic Techniques
8.
Opt Express ; 31(1): 459-468, 2023 Jan 02.
Article in English | MEDLINE | ID: mdl-36606980

ABSTRACT

Polarization imaging techniques have more prominent advantages for imaging in strongly scattered media. Previous de-scattering methods of polarization imaging usually require the priori information of the background region, and rarely consider the effect of non-uniformity of the optical field on image recovery, which not only reduces the processing speed of imaging but also introduces errors in image recovery, especially for moving targets in complex scattering environments. In this paper, we propose a turbid underwater moving image recovery method based on the global estimation of the intensity and the degree of polarization (DOP) of the backscattered light, combined with polarization-relation histogram processing techniques. The full spatial distribution of the intensity and the DOP of the backscattered light are obtained by using frequency domain analysis and filtering. Besides, a threshold factor is set in the frequency domain low-pass filter, which is used to adjust the execution region of the filter, which effectively reduces the error in image recovery caused by estimating the DOP of the backscattered light as a constant in traditional methods with non-uniform illumination. Meanwhile, our method requires no human-computer interaction, which effectively solves the drawbacks that the moving target is difficult to be recovered by traditional methods. Experimental studies were conducted on static and moving targets under turbid water, and satisfactory image recovery quality is achieved.


Subject(s)
Diagnostic Imaging , Lighting , Nephelometry and Turbidimetry , Scattering, Radiation , Refraction, Ocular
9.
Scand J Clin Lab Invest ; 83(1): 60-63, 2023 02.
Article in English | MEDLINE | ID: mdl-36448677

ABSTRACT

This study aimed to examine the agreement of the serum amyloid A (SAA) values determined using the ELISA test and the nephelometric automated method. This study included 80 serum samples obtained from patients with COVID-19. Samples were determined using ELISA and the nephelometric method. Wilcoxon signed ranks test showed a statistically significant difference in the calculated median values (Z = -2.432, p = 0.015). The correlation between methods was statistically significant (r = 0.603, p < 0.0001). Bland Altman analysis showed a bias of 56.6 mg/L and a relative bias of 7.4% between the methods. The results of this study indicate that further studies are needed that will examine the compliance between the ELISA and the nephelometric method for determining SAA, and the results must be carefully interpreted based on the method used.


Subject(s)
COVID-19 , Serum Amyloid A Protein , Humans , Serum Amyloid A Protein/analysis , COVID-19/diagnosis , Enzyme-Linked Immunosorbent Assay , Nephelometry and Turbidimetry
10.
Sensors (Basel) ; 23(12)2023 Jun 09.
Article in English | MEDLINE | ID: mdl-37420631

ABSTRACT

We established an experimental apparatus by combining polarized light scattering and angle-resolved light scattering measurement technology to rapidly identify the shape of an individual aerosol particle. The experimental data of scattered light of Oleic acid, rod-shaped Silicon dioxide, and other particles with typical shape characteristics were analyzed statistically. To better study the relationship between the shape of particles and the properties of scattered light, the partial least squares discriminant analysis (PLS-DA) method was used to analyze the scattered light of aerosol samples based on the size screening of particles, and the shape recognition and classification method of the individual aerosol particle was established based on the analysis of the spectral data after nonlinear processing and grouping by particle size with the area under the receiver operating characteristic curve (AUC) as reference. The experimental results show that the proposed classification method has a good discrimination ability for spherical, rod-shaped, and other non-spherical particles, which can provide more information for atmospheric aerosol measurement, and has application value for traceability and exposure hazard assessment of aerosol particles.


Subject(s)
Particle Size , Nephelometry and Turbidimetry , Aerosols
11.
Anal Biochem ; 637: 114449, 2022 01 15.
Article in English | MEDLINE | ID: mdl-34762874

ABSTRACT

Nanoparticles have been used as antibacterial agents in several products. To optimize their effectiveness, synthesis processes and particle modifications have been developed, creating the need for a rapid screening method to investigate their potencies. Owing to the opacity and insolubility of nanoparticles, a classical method to determine antibacterial activity-such as the minimum inhibitory concentration (MIC), which relies on turbidimetry-might not apply to them. In this study, we demonstrate the potential of a dye (resazurin)-based assay as an indicator of bacterial growth to rapidly screen the antibacterial activities of both organic and inorganic nanomaterials against both gram-negative (E. coli) and gram-positive (S. aureus) bacteria. The results indicate that the resazurin-based assay successfully determine the MIC of organic lipid nanocarriers, and several inorganic nanoparticles. However, the use of resazurin require a precaution for nanoparticles with photocatalytic properties, which may cause dye degradation at higher concentrations. In this study, resazurin bleaching was observed at approximately >50 mg/ml of TiO2. In summary, the modified MIC assay with resazurin can evaluate antibacterial activity of nanomaterials, whose turbidity interferer conventional MIC assay. This modification conserves an advantage of MICs assay which are simple and reliable. This would be useful for screening of antibacterial nanomaterials.


Subject(s)
Anti-Bacterial Agents/administration & dosage , Escherichia coli/drug effects , Nanoparticles/administration & dosage , Oxazines/chemistry , Staphylococcus aureus/drug effects , Xanthenes/chemistry , Anti-Bacterial Agents/chemistry , Indicators and Reagents/chemistry , Metal Nanoparticles/administration & dosage , Metal Nanoparticles/chemistry , Microbial Sensitivity Tests/methods , Nanoparticles/chemistry , Nephelometry and Turbidimetry/methods , Oils, Volatile/chemistry , Particle Size , Silver/chemistry , Titanium/chemistry , Zinc Oxide/chemistry
12.
Clin Lab ; 68(12)2022 Dec 01.
Article in English | MEDLINE | ID: mdl-36546750

ABSTRACT

BACKGROUND: The purpose of this study was to investigate the immunological and physical characteristics of IgM-λ type M-protein from patients who were measured low in the turbidimetric immunoassay (TIA) IgM assay without error codes for high concentration to determine the cause of the false low levels and to clarify the mechanism of their occurrence. METHODS: Materials were IgM patient samples and 8 serum samples from other IgM M-protein patients as controls. Patient samples were assayed by the TIA method, in which five manufacturers and six models (two reagent manufacturers) share the principle, and the BN ProSpec method (nephelometric method), which has a different principle. Dilution linearity tests, IgG addition experiments, isoelectric point electrophoresis, and hydrophobic chromatography were performed on patients and subjects. In addition, the binding capacity of γ-globulin by BIACORE was also examined. RESULTS: The reaction curve of the patient IgM curved downward when the concentration of IgM exceeded 20 g/L, and no error code was obtained. In the measurement by the TIA method of five manufacturers and six models, patient IgM was measured at a false low level with no error code obtained in undiluted dilution by any of the instruments and reagents, but could be measured without any problem by the nephelometric method. In addition, in the patient IgG addition experiment, only patient IgM showed a false low level under high IgG concentration. Furthermore, the binding capacity of patient IgM to γ-globulin (IgG) by BIACORE was significantly higher than that of the control IgM-type M protein. CONCLUSIONS: Patient IgM has an affinity (binding capacity) for IgG and forms an IgM-IgG complex under conditions of high IgG concentration. It was speculated that this complex inhibited the reaction with the anti-IgM antibody and the absorbance of the second reaction did not increase, suggesting a false low.


Subject(s)
Immunoturbidimetry , gamma-Globulins , Humans , Immunoglobulin M , Nephelometry and Turbidimetry , Indicators and Reagents , Immunoglobulin G , Immunoassay/methods
13.
Appl Opt ; 61(10): 2775-2787, 2022 Apr 01.
Article in English | MEDLINE | ID: mdl-35471353

ABSTRACT

The determination of the optical properties in turbid media plays an essential role in medical diagnostics and process control. The method of spatially resolved reflectance measurements is a frequently used tool to evaluate the reduced scattering coefficient as well as the absorption coefficient. In most cases a smooth interface is assumed between the medium under investigation and the surrounding medium. However, in reality, a rough surface is present at the interface, which alters the light interaction with the surface and volume of the turbid medium. Hence, the idea behind this paper was to investigate the influence of rough surfaces on the spatially resolved reflectance and thus on the determination of the optical properties of turbid media. Particularly, the influence of a Lambertian scattering surface on the result of Monte Carlo simulations of a spatially resolved reflectance setup is shown. In addition, we distinguish between the different interaction modes of surface scattering on the spatially resolved reflectance. There is a strong influence of roughness when the light enters and leaves the turbid medium. Furthermore, the simulations show that, especially for small reduced scattering coefficients and absorption coefficients, large errors in the determination of the optical properties are obtained.


Subject(s)
Scattering, Radiation , Monte Carlo Method , Nephelometry and Turbidimetry
14.
Appl Opt ; 61(27): 8123-8132, 2022 Sep 20.
Article in English | MEDLINE | ID: mdl-36255935

ABSTRACT

Spatially resolved reflectance measurements are a standard tool for determining the absorption and scattering properties of turbid media such as biological tissue. However, in literature, it was shown that these measurements are subject to errors when a possible rough surface between the turbid medium and the surrounding is not accounted for. We evaluated these errors by comparing the spatially resolved reflectance measured on rough epoxy-based samples with Monte Carlo simulations using Lambertian surface scattering, the Cook-Torrance model, and the generalized Harvey-Shack model as surface scattering models. To this aim, goniometric measurements on the epoxy-based samples were compared to the angularly resolved reflectance of the three surface models to estimate the corresponding model parameters. Finally, the optical properties of the phantoms were determined using a Monte Carlo model with a smooth surface.


Subject(s)
Nephelometry and Turbidimetry , Scattering, Radiation , Monte Carlo Method , Phantoms, Imaging
15.
Biochemistry ; 60(32): 2447-2456, 2021 08 17.
Article in English | MEDLINE | ID: mdl-34369156

ABSTRACT

The turbidity assay is commonly exploited to study protein liquid-to-liquid phase separation (LLPS) or liquid-to-solid phase separation (LSPS) processes in biochemical analyses. Herein, we present common pitfalls of this assay caused by exceeding the detection linear range. We showed that aggregated proteins of high concentration and large particle size can lead to inaccurate quantification in multiple applications, including the optical density measurement, the thermal shift assay, and the dynamic light scattering experiment. Finally, we demonstrated that a simple sample dilution of insoluble aggregated protein (LSPS) samples or direct imaging of liquid droplets (LLPS) can address these issues and improve the accuracy of the turbidity assay.


Subject(s)
Chemical Fractionation/methods , Nephelometry and Turbidimetry/methods , Proteins/chemistry , Proteins/isolation & purification , Amyloid/analysis , Amyloid/chemistry , Dynamic Light Scattering , Kinetics , Limit of Detection , Particle Size , Protein Aggregates , Spectrum Analysis
16.
J Mol Recognit ; 34(10): e2902, 2021 10.
Article in English | MEDLINE | ID: mdl-34013591

ABSTRACT

Macromolecular crowding plays an inevitable role in all biological processes influencing association, conformation, and other characteristics of proteins. Present study is based on the effect of macromolecular crowding on structure of horseradish peroxidase (HRP) enzyme. Concentration-dependent conformational changes induced by crowding agents, dextran 70 and polyethylene glycol (PEG)-4000, were monitored employing a range of biophysical techniques. The intrinsic fluorescence spectra showed transition of protein from native to unfolded state. Marked increase in 8-Anilino-1-naphthalene-sulphonoic acid and Thioflavin T fluorescence indicated presence of non-native moieties with 80 mg/mL dextran. Enhanced absorbance in turbidity, Soret, and Congo red in corroboration with scattering intensity at 350nm results revealed incidence of HRP aggregates. A new peak around 218 nm in CD spectra pointed towards change in secondary structure towards ß-sheets. Significant loss of enzyme activity upon structural disruption was seen. Comet assay demonstrated DNA damage and genotoxic nature of HRP aggregates, supporting spectroscopic, and fluorescence results. The normalized results were obtained with 120 mg/mL PEG-4000 close to that of native HRP implying no disruptive effect on structure. It can be hypothesized that macromolecular crowding is a vital element, which can have diverse effects. In this study, dextran 70 was observed to have pro-aggregatory effect while enhanced stability of native enzyme was witnessed with PEG. Hence, it can be stated that PEG has potentially better crowder as it helps retain the native enzyme structure. Routine addition of crowding agents is recommended if biological molecules are to be studied under more physiologically appropriate environments.


Subject(s)
Dextrans/chemistry , Horseradish Peroxidase/chemistry , Polyethylene Glycols/chemistry , Acrylamide/chemistry , Benzothiazoles/chemistry , Circular Dichroism , Comet Assay , Horseradish Peroxidase/metabolism , Horseradish Peroxidase/pharmacology , Humans , Lymphocytes , Nephelometry and Turbidimetry , Protein Conformation, beta-Strand , Protein Stability , Protein Structure, Secondary , Spectrometry, Fluorescence
17.
Opt Lett ; 46(8): 1860-1863, 2021 Apr 15.
Article in English | MEDLINE | ID: mdl-33857088

ABSTRACT

The presence of hydrosols, taken as suspension of micro- or macroscopic material in water, strongly alters light propagation and thus the radiance distribution within a natural or artificial water volume. Understanding of hydrosols' impacts on light propagation is limited by our ability to accurately handle the angular scattering phase function inherent to complex material such as suspended sediments or living cells. Based on actual quality-controlled measurements of sediments and microalgae, this Letter demonstrates the superiority of a two-term five-parameter empirical phase function as recently proposed for scattering by nanoparticle layers [Nanoscale11, 7404 (2019)NANOHL2040-336410.1039/C9NR01707K]. The use of such phase function parameterizations presents new potentialities for various radiative transfer and remote sensing applications related to an aquatic environment.


Subject(s)
Microalgae , Computer Simulation , Light , Nephelometry and Turbidimetry , Scattering, Radiation
18.
Anal Bioanal Chem ; 413(12): 3369-3379, 2021 May.
Article in English | MEDLINE | ID: mdl-33796930

ABSTRACT

Many patients develop coagulation abnormalities due to chronic and hereditary disorders, infectious disease, blood loss, extracorporeal circulation, and oral anticoagulant misuse. These abnormalities lead to bleeding or thrombotic complications, the risk of which is assessed by coagulation analysis. Current coagulation tests pose safety concerns for neonates and small children due to large sample volume requirement and may be unreliable for patients with coagulopathy. This study introduces a containerless drop-of-blood method for coagulation analysis, termed "integrated quasi-static acoustic tweezing thromboelastometry" (i-QATT™), that addresses these needs. In i-QATT™, a single drop of blood is forced to levitate and deform by the acoustic radiation force. Coagulation-induced changes in drop turbidity and firmness are measured simultaneously at different instants. The parameters describing early, intermediate, and late stages of the coagulation process are evaluated from the resulting graphical outputs. i-QATT™ rapidly (<10 min) detected hyper- and hypo-coagulable states and identified single deficiency in coagulation factors VII, VIII, IX, X, and XIII. The linear relationship (r2 > 0.9) was established between fibrinogen concentration and two i-QATT™ parameters: maximum clot firmness and maximum fibrin level. Factor XIII activity was uniquely measured by the fibrin network formation time (r2 = 0.9). Reaction time, fibrin formation rate, and time to firm clot formation were linearly correlated with heparin concentration (r2 > 0.7). tPA-induced hyperfibrinolysis was detected in the clot firmness output at 10 min. i-QATT™ provides comprehensive coagulation analysis in point-of-care or laboratory settings, well suited to the needs of neonatal and pediatric patients and adult patients with anemia or blood collection issues.


Subject(s)
Blood Coagulation , Nephelometry and Turbidimetry/methods , Thrombelastography/methods , Anticoagulants/therapeutic use , Drug Monitoring , Feasibility Studies , Humans
19.
Appl Opt ; 60(36): 11161-11179, 2021 Dec 20.
Article in English | MEDLINE | ID: mdl-35201105

ABSTRACT

Optical proxies based on light scattering measurements have potential to improve the study and monitoring of aquatic environments. In this study, we evaluated several optical proxies for characterization of particle mass concentration, composition, and size distribution of suspended particulate matter from two contrasting coastal marine environments. We expanded upon our previous study of Southern California coastal waters, which generally contained high proportions of organic particles, by conducting angle-resolved polarized light scattering measurements in predominantly turbid and inorganic-particle dominated Arctic coastal waters near Prudhoe Bay, Alaska. We observed that the particulate backscattering coefficient bbp was the most effective proxy for the mass concentration of suspended particulate matter (SPM) when compared with particulate scattering and attenuation coefficients bp and cp. Improvements were seen with bbp as a proxy for the concentration of particulate organic carbon (POC), although only if particulate assemblages were previously classified in terms of particle composition. We found that the ratio of polarized-light scattering measurements at 110º and 18º was superior in performance as a proxy for the composition parameter POC/SPM in comparison to the particulate backscattering ratio bbp/bp. The maximum value of the degree of linear polarization DoLPp,max observed within the range of scattering angles 89°-106° was found to provide a reasonably good proxy for a particle size parameter (i.e., 90th percentile of particle volume distribution) which characterizes the proportions of small- and large-sized particles. These findings can inform the development of polarized light scattering sensors to enhance the capabilities of autonomous platforms.


Subject(s)
Particulate Matter , Nephelometry and Turbidimetry , Oxygen Isotopes , Particulate Matter/analysis , Scattering, Radiation
20.
J Oncol Pharm Pract ; 27(4): 847-856, 2021 Jun.
Article in English | MEDLINE | ID: mdl-32660375

ABSTRACT

INTRODUCTION: The extended stability of the trastuzumab biosimilar Ogivri™ (MYL-1401O; trastuzumab-dkst) was studied under different storage conditions, including following reconstitution of the lyophilized powder (21 mg/mL) but undiluted and stored in vials at 4°C; after dilution at two concentrations (0.8 and 2.4 mg/mL) in polyolefin bags and stored at 4°C; and following a three-day thermal excursion to 25°C. METHODS: Several methods were utilized to assess the physical and chemical stability of the drug under different storage conditions. RESULTS: At all storage conditions tested, there was no change in the tertiary structure of MYL-1401O as assessed by second-derivative ultraviolet and fluorescence-derived spectral analysis, and no evidence of oligomer formation or fragmentation was observed as assessed by gel exclusion chromatography and dynamic light scattering, confirmed by assessment of quinary structures using size-exclusion chromatography. Ion-exchange chromatography showed no significant changes in the distribution of ionic variants, particularly deamidations. Thermal denaturation curves indicated no destabilization of the three-dimensional structure after 90 days at 4°C or after thermal excursion for 72 h at 25°C. CONCLUSION: The trastuzumab biosimilar MYL-1401O maintained its physical and chemical stability for at least 90 days at 4°C or after thermal excursion to 25°C, supporting the safe use of MYL-1401O in several real-world settings, including advanced preparation for administration or when a break in the cold cycle occurs.


Subject(s)
Biosimilar Pharmaceuticals/chemistry , Filgrastim/chemistry , Polyethylene Glycols/chemistry , Trastuzumab/chemistry , Chromatography, Gel , Chromatography, High Pressure Liquid , Chromatography, Ion Exchange , Drug Packaging , Drug Stability , Drug Storage , Light , Nephelometry and Turbidimetry , Powders , Scattering, Radiation , Spectrometry, Fluorescence , Spectrophotometry, Ultraviolet , Temperature
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