Your browser doesn't support javascript.
loading
Show: 20 | 50 | 100
Results 1 - 20 de 36
Filter
1.
Arch Virol ; 168(4): 103, 2023 Mar 09.
Article in English | MEDLINE | ID: mdl-36892708

ABSTRACT

Here, we report a novel mycotombus-like mycovirus, tentatively named "Phoma matteucciicola RNA virus 2" (PmRV2), derived from the phytopathogenic fungus Phoma matteucciicola strain HNQH1. The complete PmRV2 genome is comprised of a positive-sense single-stranded RNA (+ssRNA) of 3,460 nucleotides (nt) with a GC content of 56.71%. Sequence analysis of PmRV2 indicated the presence of two noncontiguous open reading frames (ORFs) encoding a hypothetical protein and an RNA-dependent RNA polymerase (RdRp), respectively. PmRV2 contains a metal-binding 'GDN' triplet in motif C of RdRp, while most +ssRNA mycoviruses contained a 'GDD' motif in the same region. A BLASTp search showed that the RdRp amino acid sequence of PmRV2 was most closely related to the RdRp of Macrophomina phaseolina umbra-like virus 1 (50.72% identity) and Erysiphe necator umbra-like virus 2 (EnUlV2, 44.84% identity). Phylogenetic analysis indicated that PmRV2 grouped together with EnUlV2 within the recently proposed family "Mycotombusviridae".


Subject(s)
Fungal Viruses , RNA Viruses , Phoma , Phylogeny , RNA Viruses/genetics , Amino Acid Sequence , Fungal Viruses/genetics , RNA-Dependent RNA Polymerase/genetics , Open Reading Frames , Genome, Viral , RNA, Viral/genetics
2.
Appl Microbiol Biotechnol ; 107(16): 4991-5001, 2023 Aug.
Article in English | MEDLINE | ID: mdl-37401998

ABSTRACT

The genus Phoma has been explored for a wide range of secondary metabolites signifying a huge range of bioactivities. Phoma sensu lato is a major group that secretes several secondary metabolites. The genus Phoma mainly includes Phoma macrostoma, P. multirostrata, P. exigua, P. herbarum, P. betae, P. bellidis, P. medicaginis, P. tropica, and many more species from the genus that are continuously being identified for their potential secondary metabolites. The metabolite spectrum includes bioactive compounds like phomenon, phomin, phomodione, cytochalasins, cercosporamide, phomazines, and phomapyrone reported from various Phoma spp. These secondary metabolites show a broad range of activities including antimicrobial, antiviral, antinematode, and anticancer. The present review is aimed to emphasize the importance of Phoma sensu lato fungi, as a natural source of biologically active secondary metabolites, and their cytotoxic activities. So far, cytotoxic activities of Phoma spp. have not been reviewed; hence, this review will be novel and useful for the readers to develop Phoma-derived anticancer agents. KEY POINTS: • Different Phoma spp. contain a wide variety of bioactive metabolites. • These Phoma spp. also secrete cytotoxic and antitumor compounds. • The secondary metabolites can be used for the development of anticancer agents.


Subject(s)
Antineoplastic Agents , Phoma , Phoma/metabolism , Antineoplastic Agents/pharmacology , Antineoplastic Agents/metabolism
3.
Arch Microbiol ; 204(3): 171, 2022 Feb 14.
Article in English | MEDLINE | ID: mdl-35157131

ABSTRACT

Melanins are high molecular weight hydrophobic pigments which have gained popularity for their role in virulence against different pathogens. In the present study, we isolated and characterized the melanin pigment produced by a dark septate endophyte fungus Phoma sp. RDSE17, which was associated with the roots of an indigenous Oryza sativa cv. 'Chakhao amubi' in Manipur, Northeast India. The biological properties of purified melanin from the fungus were evaluated for their antioxidant, antimicrobial and anticancerous activities. The pigment was extracted from Phoma sp. by alkaline-acid hydrolysis method and confirmed as melanin through physico-chemical tests and spectral (UV, FTIR, and EPR) analysis. The analyses of the elemental composition indicated that the pigment possessed a low percentage of nitrogen (N) contents, and therefore, would not fall under DOPA class of melanin. Exposure of the fungus to melanin pathway inhibitors revealed a positive melanin inhibition by tricyclazole, but not by kojic acid. Thus, the melanin from Phoma sp. may be a member of the DHN family. Moreover, the purified melanin showed high DPPH (1, 1-Diphenyl-2-picrylhydrazyl) free radical-scavenging activity with an EC50 of 69 µg/mL and inhibited human lung cancer cell (A549 cells) proliferation at 80 µg/mL. The present study demonstrates that melanin from Phoma sp. RDSE17 could be employed as a potential biological (antioxidant) and antimicrobial agent for inhibiting the growth of humans and phytopathogens.


Subject(s)
Melanins , Phoma , Fungi , Humans , India , Pigmentation
4.
Chem Biodivers ; 19(1): e202100608, 2022 Jan.
Article in English | MEDLINE | ID: mdl-34786852

ABSTRACT

A new globoscinic acid derivative, aspertubin A (1) along with four known compounds, were obtained from the co-culture of Aspergillus tubingensis S1120 with red ginseng. The chemical structures of compounds were characterized by using spectroscopic methods, the calculated and experimental electronic circular dichroism. Panaxytriol (2) from red ginseng, and asperic acid (4) showed significant antifeedant effect with the antifeedant rates of 75 % and 80 % at the concentrations of 50 µg/cm2 . Monomeric carviolin (3) and asperazine (5) displayed weak attractant activity on silkworm. All compounds were assayed for antifungal activities against phytopathogens A. tubingensis, Nigrospora oryzae and Phoma herbarum and the results indicated that autotoxic aspertubin A (1) and panaxytriol (2) possessed selective inhibition against A. tubingensis with MIC values at 8 µg/mL. The co-culture extract showed higher antifeedant and antifungal activities against P. herbarum than those of monoculture of A. tubingensis in ordinary medium. So the medicinal plant and endophyte showed synergistic effect on the plant disease resistance by active compounds from the coculture of A. tubingensis S1120 and red ginseng.


Subject(s)
Antifungal Agents/chemistry , Aspergillus/chemistry , Insect Repellents/chemistry , Panax/chemistry , Animals , Antifungal Agents/isolation & purification , Antifungal Agents/pharmacology , Ascomycota/drug effects , Aspergillus/growth & development , Aspergillus/metabolism , Bombyx/drug effects , Bombyx/growth & development , Enediynes/chemistry , Enediynes/isolation & purification , Enediynes/pharmacology , Fatty Alcohols/chemistry , Fatty Alcohols/isolation & purification , Fatty Alcohols/pharmacology , Insect Repellents/isolation & purification , Insect Repellents/pharmacology , Microbial Sensitivity Tests , Molecular Conformation , Panax/growth & development , Panax/metabolism , Phoma/drug effects , Plants, Medicinal/chemistry , Plants, Medicinal/growth & development , Plants, Medicinal/metabolism
5.
Plant Dis ; 106(7): 1857-1866, 2022 Jul.
Article in English | MEDLINE | ID: mdl-35072508

ABSTRACT

Disease caused by Neocamarosporium betae (syn. Phoma betae, Pleospora betae) results in reductions in plant populations, foliar disease (Phoma leaf spot [PLS]), and root disease and decay in table beet. Disease caused by N. betae has reemerged as prevalent in organic table beet production in New York. The disease can also cause substantial issues in conventional table beet production. To evaluate in-field control options for conventional and organic table beet production, small-plot, replicated trials were conducted in each of two years (2019 and 2021). The fungicides, propiconazole and difenoconazole, and premixtures, pydiflumetofen + fludioxonil or pydiflumetofen + difenoconazole, provided excellent PLS and root decay control. Azoxystrobin provided excellent (69.9%) control of PLS in 2019 and lesser (40%) control in 2021. Field trial results complemented in vitro sensitivity testing of 30 New York N. betae isolates that were all highly sensitive to azoxystrobin (mean effective concentration to reduce mycelial growth by 50%, EC50 = 0.0205 µg/ml) and propiconazole (mean EC50 = 0.0638 µg/ml). Copper octanoate and microbial biopesticides containing either Bacillus amyloliquefaciens D747 or B. mycoides strain J provided moderate (68.5 to 74.6%) PLS control as reflected in epidemic progress. The Gompertz model provided the best fit to PLS epidemics reflecting a polycyclic epidemic. Reductions in PLS severity were associated with significant decreases in Phoma root decay and increases in canopy health and the time-to-death of leaves compared with nontreated control plots. Prolonging leaf survival is critical for mechanical harvest of roots. These findings underpin the design of programs for foliar disease control in conventional and organic table beet production. Assessment of PLS severity in the field will better inform postharvest management decisions.


Subject(s)
Beta vulgaris , Ascomycota , New York , Phoma , Plant Diseases/prevention & control
6.
Molecules ; 27(4)2022 Feb 10.
Article in English | MEDLINE | ID: mdl-35208971

ABSTRACT

The aim of our study was to examine the different concentrations of AuNPs as a new antimicrobial substance to control the pathogenic activity. The extracellular synthesis of AuNPs performed by using Phoma sp. as an endophytic fungus. Endophytic fungus was isolated from vascular tissue of peach trees (Prunus persica) from Baft, located in Kerman province, Iran. The UltraViolet-Visible Spectroscopy (UV-Vis spectroscopy) and Fourier transform infrared spectroscopy provided the absorbance peak at 526 nm, while the X-ray diffraction and transmission electron microscopy images released the formation of spherical AuNPs with sizes in the range of 10-100 nm. The findings of inhibition zone test of Au nanoparticles (AuNPs) showed a desirable antifungal and antibacterial activity against phytopathogens including Rhizoctonia solani AG1-IA (AG1-IA has been identified as the dominant anastomosis group) and Xanthomonas oryzae pv. oryzae. The highest inhibition level against sclerotia formation was 93% for AuNPs at a concentration of 80 µg/mL. Application of endophytic fungus biomass for synthesis of AuNPs is relatively inexpensive, single step and environmentally friendly. In vitro study of the antifungal activity of AuNPs at concentrations of 10, 20, 40 and 80 µg/mL was conducted against rice fungal pathogen R. solani to reduce sclerotia formation. The experimental data revealed that the Inhibition rate (RH) for sclerotia formation was (15, 33, 74 and 93%), respectively, for their corresponding AuNPs concentrations (10, 20, 40 and 80 µg/mL). Our findings obviously indicated that the RH strongly depend on AuNPs rates, and enhance upon an increase in AuNPs rates. The application of endophytic fungi biomass for green synthesis is our future goal.


Subject(s)
Anti-Bacterial Agents , Antifungal Agents , Biomass , Endophytes/chemistry , Gold , Metal Nanoparticles/chemistry , Phoma/chemistry , Rhizoctonia/growth & development , Xanthomonas/growth & development , Anti-Bacterial Agents/chemistry , Anti-Bacterial Agents/pharmacology , Antifungal Agents/chemistry , Antifungal Agents/pharmacology , Drug Evaluation, Preclinical , Gold/chemistry , Gold/pharmacology
7.
Planta ; 253(4): 78, 2021 Mar 14.
Article in English | MEDLINE | ID: mdl-33715081

ABSTRACT

MAIN CONCLUSION: The in vitro application of rhizosphere microorganisms led to a higher rooting percentage in Pyrus Py12 rootstocks and increased plant growth of Pyrus Py170 and Prunus RP-20. The rooting of fruit tree rootstocks is the most challenging step of the in vitro propagation process. The use of rhizosphere microorganisms to promote in vitro rooting and plant growth as an alternative to the addition of chemical hormones to culture media is proposed in the present study. Explants from two Pyrus (Py170 and Py12) rootstocks and the Prunus RP-20 rootstock were inoculated with Pseudomonas oryzihabitans PGP01, Cladosporium ramotenellum PGP02 and Phoma sp. PGP03 following two different methods to determine their effects on in vitro rooting and plantlet growth. The effects of the microorganisms on the growth of fully developed Py170 and RP-20 plantlets were also studied in vitro. All experiments were conducted using vermiculite to simulate a soil system in vitro. When applied to Py12 shoots, which is a hard-to-root plant material, both C. ramotenellum PGP02 and Phoma sp. PGP03 fungi were able to increase the rooting percentage from 56.25% to 100% following auxin indole-3-butyric acid (IBA) treatment. Thus, the presence of these microorganisms clearly improved root development, inducing a higher number of roots and causing shorter roots. Better overall growth and improved stem growth of treated plants was observed when auxin treatment was replaced by co-culture with microorganisms. A root growth-promoting effect was observed on RP-20 plantlets after inoculation with C. ramotenellum PGP02, while P. oryzihabitans PGP01 increased root numbers for both Py170 and RP-20 and increased root growth over stem growth for RP-20. It was also shown that the three microorganisms P. oryzihabitans PGP01, C. ramotenellum PGP02 and Phoma sp. PGP03 were able to naturally produce auxin, including indole-3-acetic acid (IAA), at different levels. Overall, our results demonstrate that the microorganisms P. oryzihabitans PGP01 and C. ramotenellum PGP02 had beneficial effects on in vitro rooting and plantlet growth and could be applied to in vitro tissue culture as a substitute for IBA.


Subject(s)
Cladosporium/physiology , Plant Roots/physiology , Prunus/physiology , Pseudomonas/physiology , Pyrus/physiology , Phoma/physiology , Plant Roots/microbiology , Prunus/microbiology , Pyrus/microbiology , Rhizosphere , Soil Microbiology
8.
Genome ; 64(7): 693-704, 2021 Jul.
Article in English | MEDLINE | ID: mdl-33464999

ABSTRACT

Pathogenesis-related (PR) proteins play important roles in plant defense response. However, functional investigation of PR10 genes is still limited and their physiological roles have not been conclusively characterized in biological processes of conifer trees. Here, we identified multiple novel members in the western white pine (Pinus monticola) PmPR10 family by bioinformatic mining available transcriptomic data. Phylogenetic analysis of protein sequences revealed four PR10 and two PR10-like clusters with a high synteny across different species of five-needle pines. Of 10 PmPR10 genes, PmPR10-3.1 was selected and expressed in Escherichia coli. The purified recombinant protein exhibited inhibitory effects on spore hyphal growth of fungal pathogens Cronartium ribicola, Phoma exigua, and Phoma argillacea by in-vitro anti-fungal analysis. Genetic variation analysis detected a total of 21 single nucleotide polymorphisms (SNPs) within PmPR10-3.1 in a collection of P. monticola seed families. A nonsynonymous SNP (t178g) showed significant association with relative levels of quantitative disease resistance (QDR), explaining about 8.7% of phenotypic variation as the peak value across all SNPs. Our results provide valuable insight into the genetic architecture underlying P. monticola QDR and imply that PmPR10-3.1 may function as an important component in conifer basal immunity for non-specific resistance to a wide spectrum of pathogens.


Subject(s)
Basidiomycota , Disease Resistance , Pinus , Plant Diseases , Basidiomycota/pathogenicity , Disease Resistance/genetics , Humans , Phoma/pathogenicity , Phylogeny , Pinus/genetics , Plant Diseases/genetics , Plant Diseases/microbiology , Polymorphism, Single Nucleotide
9.
Arch Virol ; 166(1): 317-320, 2021 Jan.
Article in English | MEDLINE | ID: mdl-33141334

ABSTRACT

The complete genome sequence of a novel mycovirus, Phoma matteucciicola RNA virus 1 (PmRV1), derived from Phoma matteucciicola strain LG-01, was sequenced and analyzed. The complete cDNA sequence of PmRV1 is 3432 bp in length with a GC content of 57.17%. The genome of PmRV1 contains two putative open reading frames (ORFs): ORF1 and ORF2. ORF1 encodes a hypothetical protein with significant similarity to a protein encoded by Periconia macrospinosa ambiguivirus 1 (PmAV1). ORF2 encodes a protein of 491 amino acids with a conserved RNA-dependent RNA polymerase (RdRp) domain. Additionally, the triad within domain III has an asparagine (GDN) instead of the nearly universally conserved aspartic acid (GDD). RdRp phylogeny showed that PmRV1 grouped together with PmAV1 as a sister branch of a new member of the recently proposed family of mycotombus-like viruses. This is first report of the complete sequence of a novel mycovirus, PmRV1, infecting Phoma matteucciicola strain LG-01, the causal agent of leaf blight of Curcuma wenyujin.


Subject(s)
Ascomycota/virology , Fungal Viruses/genetics , Genome, Viral/genetics , Phoma/virology , RNA Viruses/genetics , Amino Acid Sequence , Open Reading Frames/genetics , Phylogeny , RNA, Double-Stranded/genetics , RNA, Viral/genetics , RNA-Dependent RNA Polymerase/genetics , Sequence Analysis, DNA/methods , Whole Genome Sequencing/methods
10.
J Appl Microbiol ; 130(2): 547-560, 2021 Feb.
Article in English | MEDLINE | ID: mdl-31310670

ABSTRACT

AIMS: One of the major limitations to the production of alfalfa (Medicago sativa) is the fungus Phoma medicaginis, which infects alfalfa and causes leaf spots. This study aims to understand alfalfa's response to P. medicaginis infection, the colonization of arbuscular mycorrhizal fungus (AMF) and the effect of AMF on plant-pathogen interactions. METHODS AND RESULTS: Transcriptome analysis (RNA-seq) was used to identify differentially expressed genes (DEGs) in alfalfa infected by P. medicaginis and colonized by AMF Rhizophagus intraradices. AMF ameliorated the effects of P. medicaginis infection on alfalfa by reducing leaf spot incidence and disease index by 39·48 and 56·18% respectively. Inoculation with pathogen and AMF induced the activity of defence pathways, including peroxidase (POD), polyphenol oxidase activities and jasmonic acid (JA), salicylic acid concentration. Plants showed differential expression of P. medicaginis resistance-related genes, including genes belonging to pathogenesis-related (PR) proteins, chitinase activity, flavonoid biosynthesis, phenylpropanoid biosynthesis, glutathione metabolism, phenylalanine metabolism and photosynthesis. Inoculation with AMF led to changes in the expression of genes involved in PR proteins, chitinase activity, phenylalanine metabolism and photosynthesis. CONCLUSION: The physiological and transcriptional changes caused by P. medicaginis infection in non-mycorrhizal and mycorrhizal alfalfa provides crucial information for understanding AMF's association with pathogenic systems. SIGNIFICANCE AND IMPACT OF THE STUDY: This study showed that AMF alleviated alfalfa leaf spots demonstrating that AMF can serve as a biocontrol strategy for alfalfa disease management.


Subject(s)
Fungi/physiology , Medicago sativa/microbiology , Mycorrhizae/physiology , Phoma/pathogenicity , Plant Diseases/prevention & control , Biological Control Agents , Disease Resistance/genetics , Gene Expression Regulation, Plant , Plant Diseases/microbiology , Plant Proteins/genetics , RNA-Seq
11.
Appl Microbiol Biotechnol ; 105(8): 3009-3018, 2021 Apr.
Article in English | MEDLINE | ID: mdl-33770245

ABSTRACT

Modern agriculture has been facing new challenges and fostering innovations to establish sustainable plant production. An integral part of these strategies is implementing new eco-friendly technologies in plant protection for better human health and a safer environment by minimizing the use of hazardous chemicals and also encouraging innovations such as the use of bio-based strategies for weed control. This specific strategy addresses the need to reduce the use and risk of pesticides, replacing conventional chemical herbicides with new bio-based solutions. In response to these issues, biocontrol strategies are gaining increased attention from stakeholders such as farmers, seed companies, agronomists, breeders, and consumers. Among these, bioherbicides have huge potential for the management of harmful weeds without affecting the natural quality of the environment and human health. In this context, this review is devoted to present an overview of the mycoherbicidal potential of Phoma sensu lato group of fungi, examining the advances in this field, including technological and scientific challenges and outcomes achieved in recent years. The mycoherbicides are eco-friendly and economically viable. KEY POINTS: • Some Phoma species have demonstrated herbicide activity. • These species secrete secondary metabolites responsible for the control of weeds. • They can be used as non-chemical, cost-effective, and eco-friendly bioherbicides.


Subject(s)
Herbicides , Phoma , Agriculture , Humans , Plant Weeds , Weed Control
12.
Lett Appl Microbiol ; 73(4): 515-528, 2021 Oct.
Article in English | MEDLINE | ID: mdl-34263965

ABSTRACT

The process parameters were optimized to obtain enhanced enzyme activity from the fungus Phoma herbarum isolate KU4 using rice straw and saw dust as substrate under solid-state fermentation using Response surface methodology (RSM). Genetic algorithm was used to validate the RSM for maximum laccase production. Six variables, viz., pH of the media, initial moisture content, copper sulphate concentration, concentration of tannic acid, inoculum concentration and incubation time were found to be effective and optimized for enhanced production. Maximum laccase production was achieved by RSM at pH 5·0 and 86% of initial moisture content of the culture medium, 150 µmol l-1 of CuSO4 , 1·5% tannic acid and 0·128 g inoculum g-1 dry substrate inoculum size on the fourth day of fermentation. The highest laccase activity was observed as 79 008 U g-1 , which is approximately sixfold enhanced production compared to the unoptimized condition (12 085·26 U g-1 ).


Subject(s)
Laccase , Phoma , Algorithms , Culture Media , Fermentation
13.
Chem Biodivers ; 18(3): e2000964, 2021 Mar.
Article in English | MEDLINE | ID: mdl-33533151

ABSTRACT

Endophytic fungi play important roles for host's stress tolerance including invasion by pathogenic microbes. Small molecules are common weapons in the microbe-microbe interactions. Panax notoginseng is a widely used traditional Chinese medicinal plant and harbors many endophytes, some exert functions against pathogens. Here, we report six new compounds named myrothins A-F (1-6) produced by Myrothecium sp. BS-31, an endophyte isolated from P. notoginseng, and their antifungal activities against pathogenic fungi causing host root-rot disease. Their structures were elucidated with analysis of spectroscopic data including 1D and 2D NMR, HR-ESI-MS. Myrothins B (2) and E (5) showed the weak activity against Fusarium oxysporum and Phoma herbarum, and myrothins F (6) showed weak activity against F. oxysporum.


Subject(s)
Antifungal Agents/pharmacology , Endophytes/chemistry , Hypocreales/chemistry , Panax notoginseng/microbiology , Antifungal Agents/chemistry , Antifungal Agents/isolation & purification , Dose-Response Relationship, Drug , Fusarium/drug effects , Microbial Sensitivity Tests , Molecular Structure , Phoma/drug effects , Stereoisomerism , Structure-Activity Relationship
14.
Plant Dis ; 105(4): 1177-1178, 2021 Apr.
Article in English | MEDLINE | ID: mdl-32787658

ABSTRACT

Peyronellaea arachidicola is the causal agent of peanut (Arachis hypogaea L.) web blotch. Here, we report an assembled draft genome sequence of P. arachidicola strain YY187 obtained from the symptomatic leaf of peanut in China. The genome size is 47.3 Mb, consisting of 26 contigs (N50 = 2.2 Mb) with G+C content of 56.37%. This genome will provide a valuable foundation for further research on genetics and comparative genomics of P. arachidicola.


Subject(s)
Arachis , Ascomycota , Ascomycota/genetics , China , Genomics , Phoma
15.
Prep Biochem Biotechnol ; 51(9): 901-918, 2021.
Article in English | MEDLINE | ID: mdl-33586595

ABSTRACT

Production of an extracellular thermophilic and alkali stable laccase from Phoma herbarum isolate KU4 was reported for the first time, both in submerged fermentation (SmF, highest 1590 U/mL) and solid state fermentation (SSF, highest 2014.21 U/mL) using agro-industrial residues. The laccase was partially purified to 7.93 fold with the apparent molecular weight of 298 kDa. The enzyme had pH optimum at 5.0 and temperature optimum at 50 °C, with maximum stability at pH 8.0. It showed activity towards various phenolic and non-phenolic compounds. The kinetic parameters, Km, Vmax and Kcat of the laccase for DMP were 0.216 mM, 270.27 U/mg and 506.69 s-1, respectively. Laccase activity was inhibited by various metal ions and conventional inhibitors, however, it was slightly increased by Zn2+. The laccase showed good decolorization efficiency towards four industrial dyes, namely, methyl violet (75.66%), methyl green (65%), indigo carmine (58%) and neutral red (42%) within 24 h. FTIR analysis of the decolorized products confirmed the degradation of the dyes. The decolorization efficiency of the enzyme suggests that the partially purified laccase could be used to decolorize synthetic dyes present in industrial effluents and for waste water treatments. The thermophilic and alkali stable laccase may also have wider potential industrial applications.


Subject(s)
Coloring Agents/chemistry , Fungal Proteins , Hot Temperature , Laccase , Phoma/enzymology , Enzyme Stability , Fungal Proteins/chemistry , Fungal Proteins/isolation & purification , Hydrogen-Ion Concentration , Laccase/chemistry , Laccase/isolation & purification
16.
J Proteome Res ; 19(3): 1000-1012, 2020 03 06.
Article in English | MEDLINE | ID: mdl-32040328

ABSTRACT

Peyronellaea pinodes causes Ascochyta blight, one of the major diseases in pea worldwide. Cultivated pea plants have a low resistance to this disease. Although quantitative trait loci (QTLs) involved in the resistance to Ascochyta blight have been identified, the specific genes associated with these QTLs remain unknown, which makes marker-assisted selection difficult. Complex traits alter proteins and their abundance. Quantitative estimation of proteins in pea might therefore be useful in selecting potential markers for breeding. In this work, we developed a strategy using a combination of shotgun proteomics (viz., high performance liquid chromatography-mass spectrometry data-dependent acquisition) and data-independent acquisition (DIA) analysis, to identify putative protein markers associated with resistance to Ascochyta blight and explored its use for breeding selection. For this purpose, an initial list of target peptides based on proteins closely related to resistance to P. pinodes was compiled by using two genotypes with contrasting responses to the disease. Then, targeted data analysis (viz., shotgun proteomics-DIA) was used for constitutive quantification of the target peptides in a representative number of the recombinant inbred line population segregated for resistance as derived from a cross between the two genotypes. Finally, a peptide panel of potential markers for resistance to P. pinodes was built. The results thus obtained are discussed and compared with those of previous gene expression studies using the same parental pea genotypes responding to the pathogen. Also, a molecular defense mechanism against Ascochyta blight in pea is proposed. To the authors' knowledge, this is the first time a targeted proteomics approach based on data analysis has been used to identify peptides associated with resistance to this disease.


Subject(s)
Phoma , Pisum sativum , Pisum sativum/genetics , Peptides , Plant Breeding , Plant Diseases/genetics
17.
Environ Microbiol ; 22(6): 2346-2364, 2020 06.
Article in English | MEDLINE | ID: mdl-32250010

ABSTRACT

Microbial reduction of soluble selenium (Se) or tellurium (Te) species results in immobilization as elemental forms and this process has been employed in soil bioremediation. However, little is known of direct and indirect fungal interactions with Se-/Te-bearing ores. In this research, the ability of Phoma glomerata to effect transformation of selenite and tellurite was investigated including interaction with Se and Te present in sulfide ores from the Kisgruva Proterozoic volcanogenic deposit. Phoma glomerata could precipitate elemental Se and Te as nanoparticles, intracellularly and extracellularly, when grown with selenite or tellurite. The nanoparticles possessed various surface capping molecules, with formation being influenced by extracellular polymeric substances. The presence of sulfide ore also affected the production of exopolysaccharide and protein. Although differences were undetectable in gross Se and Te ore levels before and after fungal interaction using X-ray fluorescence, laser ablation inductively coupled plasma mass spectrometry of polished flat ore surfaces revealed that P. glomerata could effect changes in Se/Te distribution and concentration indicating Se/Te enrichment in the biomass. These findings provide further understanding of fungal roles in metalloid transformations and are relevant to the geomicrobiology of environmental metalloid cycling as well as informing applied approaches for Se and Te immobilization, biorecovery or bioremediation.


Subject(s)
Phoma/metabolism , Selenium/metabolism , Tellurium/metabolism , Biodegradation, Environmental , Biotransformation , Nanoparticles , Sulfides , Volcanic Eruptions
18.
BMC Plant Biol ; 20(1): 325, 2020 Jul 09.
Article in English | MEDLINE | ID: mdl-32646473

ABSTRACT

BACKGROUND: This study aimed to assess whether licorice (Glycyrrhiza uralensis) can benefit from dual inoculation by Trichoderma viride and dark septate endophytes (DSE) isolated from other medicinal plants. METHODS: First, we isolated and identified three DSE (Paraboeremia putaminum, Scytalidium lignicola, and Phoma herbarum) and Trichoderma viride from medicinal plants growing in farmland of China. Second, we investigated the influences of these three DSE on the performance of licorice at different T. viride densities (1 × 106, 1 × 107, and 1 × 108 CFU/mL) under sterilised condition in a growth chamber. RESULTS: Three DSE strains could colonize the roots of licorice, and they established a positive symbiosis with host plants depending on DSE species and T. viride densities. Inoculation of P. putaminum increased the root biomass, length, surface area, and root:shoot ratio. S. lignicola increased the root length, diameter and surface area and decreased the root:shoot ratio. P. herbarum increased the root biomass and surface area. T. viride increased the root biomass, length, and surface area. Structural equation model (SEM) analysis showed that DSE associated with T. viride augmented plant biomass and height, shoot branching, and root surface area. Variations in root morphology and biomass were attributed to differences in DSE species and T. viride density among treatments. P. putaminum or P. herbarum with low- or medium T. viride density and S. lignicola with low- or high T. viride density improved licorice root morphology and biomass. CONCLUSIONS: DSE isolated from other medicinal plants enhanced the root growth of licorice plants under different densities T. viride conditions and may also be used to promote the cultivation of medicinal plants.


Subject(s)
Ascomycota/physiology , Glycyrrhiza/microbiology , Hypocreales/physiology , Phoma/physiology , Biomass , China , Endophytes , Glycyrrhiza/growth & development , Plant Roots/growth & development , Plant Roots/microbiology , Plants, Medicinal , Symbiosis
19.
BMC Plant Biol ; 20(1): 249, 2020 Jun 03.
Article in English | MEDLINE | ID: mdl-32493219

ABSTRACT

BACKGROUND: Web blotch is one of the most important foliar diseases worldwide in peanut (Arachis hypogaea L.). The identification of quantitative trait loci (QTLs) for peanut web blotch resistance represents the basis for gene mining and the application of molecular breeding technologies. RESULTS: In this study, a peanut recombinant inbred line (RIL) population was used to map QTLs for web blotch resistance based on high-throughput genome-wide sequencing. Frequency distributions of disease grade and disease index in five environments indicated wide phenotypic variations in response to web blotch among RILs. A high-density genetic map was constructed, containing 3634 bin markers distributed on 20 peanut linkage groups (LGs) with an average genetic distance of 0.5 cM. In total, eight QTLs were detected for peanut web blotch resistance in at least two environments, explaining from 2.8 to 15.1% of phenotypic variance. Two major QTLs qWBRA04 and qWBRA14 were detected in all five environments and were linked to 40 candidate genes encoding nucleotide-binding site leucine-rich repeat (NBS-LRR) or other proteins related to disease resistances. CONCLUSIONS: The results of this study provide a basis for breeding peanut cultivars with web blotch resistance.


Subject(s)
Arachis/genetics , Disease Resistance/genetics , Plant Diseases/immunology , Quantitative Trait Loci/genetics , Arachis/immunology , Arachis/microbiology , Chromosome Mapping , Genetic Markers/genetics , High-Throughput Nucleotide Sequencing , Phoma , Plant Diseases/microbiology , Polymorphism, Single Nucleotide/genetics
20.
Org Biomol Chem ; 18(21): 4056-4062, 2020 06 07.
Article in English | MEDLINE | ID: mdl-32412573

ABSTRACT

Ergocytochalasin A (1), an unprecedented merocytochalasan formed via Diels-Alder cycloaddition of a cytochalasin with an ergosterol, was isolated from an endophytic fungus Phoma multirostrata XJ-2-1. Compound 1 possessed a unique 5/6/14/6/5/6/6/6 fused octacyclic ring system and its structure was established by detailed NMR and HRESIMS spectroscopic analyses. The absolute configuration of 1 was determined by single-crystal X-ray diffraction. A plausible biogenetic pathway of 1 was postulated. Compound 1 was evaluated for its cytotoxicity against six cancer cell lines and showed inhibitory effects with IC50 values ranging from 6.92 to 26.63 µM. The in vitro immunosuppressive activity of 1 against ConA-induced T cell and LPS-induced B cell proliferation, as well as its antiviral activity against Human dengue virus type 3 (DV3), influenza A virus (H1N1) and respiratory syncytial virus (RSV), was also evaluated. Ergocytochalasin A is the first example of a merocytochalasan which consists of one cytochalasin moiety and one ergosterol moiety. Containing eighteen chiral centers, ergocytochalasin A owns a folded framework, which makes it extremely compact in space.


Subject(s)
Antiviral Agents/pharmacology , Dengue Virus/drug effects , Influenza A Virus, H1N1 Subtype/drug effects , Phoma/chemistry , Respiratory Syncytial Virus, Human/drug effects , Antiviral Agents/chemistry , Antiviral Agents/isolation & purification , B-Lymphocytes/drug effects , Cell Proliferation/drug effects , Concanavalin A/antagonists & inhibitors , Concanavalin A/pharmacology , Dengue Virus/classification , Humans , Lipopolysaccharides/antagonists & inhibitors , Lipopolysaccharides/pharmacology , T-Lymphocytes/drug effects
SELECTION OF CITATIONS
SEARCH DETAIL