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1.
Microbiology (Reading) ; 169(7)2023 07.
Article in English | MEDLINE | ID: mdl-37477972

ABSTRACT

Over the past decades, antibiotic resistance has become a major clinical problem, and searching for new therapeutic strategies seems to be necessary. Using novel natural compounds, antimicrobial peptides, and bacteriophages is the most promising solution. In this study, various cationic metabolite-producer bacteria were isolated from different soil samples. Two isolates were identified as Stenotrophomonas maltophilia HS4 (accession number: MW791428) and Paenibacillus polymyxa HS5 (accession number: MW791430) based on biochemical characteristics and phylogenetic analysis using 16S rRNA gene sequences. The cationic compound in the fermentation broth was precipitated and purified with sodium tetraphenylborate salt. The purified cationic peptide was confirmed to be epsilon-poly-l-lysine by structural and molecular analysis using High-Performance Liquid Chromatography, Sodium dodecyl-sulfate-polyacrylamide gel electrophoresis, and Fourier-transform infrared spectroscopy. The antibacterial activity of epsilon-poly-l-lysine was evaluated against Staphylococcus aureus ATCC 25923, Escherichia coli ATCC 25922, Enterococcus faecalis ATCC 29212, Serratia marcescens ATCC 13880, and Klebsiella pneumoniae ATCC 13883 by microdilution method. Furthermore, the antibacterial effects of purified epsilon-poly-l-lysine in combination with two long non-contractile tail bacteriophages against vancomycin-resistant Enterococcus faecalis and colistin-resistant Klebsiella pneumoniae were investigated. The results indicated great antibacterial activity of epsilon-poly-l-lysine which was produced by two novel bacteria. The epsilon-poly-l-lysine as a potent cationic antimicrobial peptide is demonstrated to possess great antimicrobial activity against pathogenic and also antibiotic-resistant bacteria.


Subject(s)
Paenibacillus polymyxa , Stenotrophomonas maltophilia , Polylysine/pharmacology , Polylysine/chemistry , Polylysine/genetics , Stenotrophomonas maltophilia/genetics , Paenibacillus polymyxa/genetics , RNA, Ribosomal, 16S/genetics , Phylogeny , Anti-Bacterial Agents/pharmacology , Bacteria/genetics , Antimicrobial Cationic Peptides/pharmacology , Microbial Sensitivity Tests
2.
Microb Cell Fact ; 21(1): 224, 2022 Oct 28.
Article in English | MEDLINE | ID: mdl-36307825

ABSTRACT

ε-poly-L-lysine (ε-PL) is the main secondary metabolite of Streptomyces albulus, and it is widely used in the food industry. Polylysine synthetase (Pls) is the last enzyme in the ε-PL biosynthetic pathway. Our previous study revealed that Pls overexpressed in S. albulus CICC11022 result in the efficient production of ε-PL. In this study, a Pls gene knockout strain was initially constructed. Then, genomic, transcriptomic and metabolomic approaches were integrated to study the effects of the high expression and knockout of Pls on the gene expression and metabolite synthesis of S. albulus. The high expression of Pls resulted in 598 significantly differentially expressed genes (DEGs) and 425 known differential metabolites, whereas the inactivation of Pls resulted in 868 significant DEGs and 374 known differential metabolites. The expressions of 8 and 35 genes were negatively and positively associated with the Pls expression, respectively. Subsequently, the influence mechanism of the high expression and inactivation of Pls on the ε-PL biosynthetic pathway was elucidated. Twelve metabolites with 30% decreased yield in the high-expression strain of Pls but 30% increased production in the Pls knockout strain were identified. These results demonstrate the influence of Pls on the metabolism of S. albulus. The present work can provide the theoretical basis for improving the production capacity of ε-PL by means of metabolic engineering or developing bioactive substances derived from S. albulus.


Subject(s)
Polylysine , Streptomyces , Polylysine/genetics , Polylysine/metabolism , Transcriptome , Ligases/genetics , Ligases/metabolism , Ligases/pharmacology , Streptomyces/metabolism , Fermentation
3.
Microb Cell Fact ; 21(1): 60, 2022 Apr 09.
Article in English | MEDLINE | ID: mdl-35397580

ABSTRACT

BACKGROUND: AdpA is a global regulator of morphological differentiation and secondary metabolism in Streptomyces, but the regulatory roles of the Streptomyces AdpA family on the biosynthesis of the natural product ε-poly-L-lysine (ε-PL) remain unidentified, and few studies have focused on increasing the production of ε-PL by manipulating transcription factors in Streptomyces. RESULTS: In this study, we revealed the regulatory roles of different AdpA homologs in ε-PL biosynthesis and morphological differentiation and effectively promoted ε-PL production and sporulation in Streptomyces albulus NK660 by heterologously expressing adpA from S. neyagawaensis NRRLB-3092 (adpASn). First, we identified a novel AdpA homolog named AdpASa in S. albulus NK660 and characterized its function as an activator of ε-PL biosynthesis and morphological differentiation. Subsequently, four heterologous AdpA homologs were selected to investigate their phylogenetic relationships and regulatory roles in S. albulus, and AdpASn was demonstrated to have the strongest ability to promote both ε-PL production and sporulation among these five AdpA proteins. The ε-PL yield of S. albulus heterologously expressing adpASn was approximately 3.6-fold higher than that of the control strain. Finally, we clarified the mechanism of AdpASn in enhancing ε-PL biosynthesis and its effect on ε-PL polymerization degree using real-time quantitative PCR, microscale thermophoresis and MALDI-TOF-MS. AdpASn was purified, and its seven direct targets, zwf, tal, pyk2, pta, ack, pepc and a transketolase gene (DC74_2409), were identified, suggesting that AdpASn may cause the redistribution of metabolic flux in central metabolism pathways, which subsequently provides more carbon skeletons and ATP for ε-PL biosynthesis in S. albulus. CONCLUSIONS: Here, we characterized the positive regulatory roles of Streptomyces AdpA homologs in ε-PL biosynthesis and their effects on morphological differentiation and reported for the first time that AdpASn promotes ε-PL biosynthesis by affecting the transcription of its target genes in central metabolism pathways. These findings supply valuable insights into the regulatory roles of the Streptomyces AdpA family on ε-PL biosynthesis and morphological differentiation and suggest that AdpASn may be an effective global regulator for enhanced production of ε-PL and other valuable secondary metabolites in Streptomyces.


Subject(s)
Polylysine , Streptomyces , Phylogeny , Polylysine/genetics , Polylysine/metabolism , Secondary Metabolism , Streptomyces/genetics , Streptomyces/metabolism
4.
Nucleic Acids Res ; 47(13): 7018-7034, 2019 07 26.
Article in English | MEDLINE | ID: mdl-31114879

ABSTRACT

The yeast ribosome-associated complex RAC and the Hsp70 homolog Ssb are anchored to the ribosome and together act as chaperones for the folding and co-translational assembly of nascent polypeptides. In addition, the RAC/Ssb system plays a crucial role in maintaining the fidelity of translation termination; however, the latter function is poorly understood. Here we show that the RAC/Ssb system promotes the fidelity of translation termination via two distinct mechanisms. First, via direct contacts with the ribosome and the nascent chain, RAC/Ssb facilitates the translation of stalling-prone poly-AAG/A sequences encoding for polylysine segments. Impairment of this function leads to enhanced ribosome stalling and to premature nascent polypeptide release at AAG/A codons. Second, RAC/Ssb is required for the assembly of fully functional ribosomes. When RAC/Ssb is absent, ribosome biogenesis is hampered such that core ribosomal particles are structurally altered at the decoding and peptidyl transferase centers. As a result, ribosomes assembled in the absence of RAC/Ssb bind to the aminoglycoside paromomycin with high affinity (KD = 76.6 nM) and display impaired discrimination between stop codons and sense codons. The combined data shed light on the multiple mechanisms by which the RAC/Ssb system promotes unimpeded biogenesis of newly synthesized polypeptides.


Subject(s)
Codon/genetics , Molecular Chaperones/physiology , Multiprotein Complexes/physiology , Peptide Chain Termination, Translational/physiology , Ribosomes/metabolism , Saccharomyces cerevisiae Proteins/physiology , Codon, Terminator/genetics , Nucleic Acid Conformation , Organelle Biogenesis , Paromomycin/metabolism , Polylysine/genetics , RNA, Ribosomal/chemistry , RNA, Ribosomal/genetics , Saccharomyces cerevisiae Proteins/biosynthesis , Saccharomyces cerevisiae Proteins/genetics
5.
Bioprocess Biosyst Eng ; 41(9): 1337-1345, 2018 Sep.
Article in English | MEDLINE | ID: mdl-29978263

ABSTRACT

The antibacterial polymer ɛ-poly-L-lysine (ε-PL) has been widely used as a safe food preservative. As the synthesis of ε-PL requires a rich supply of nitrogen, the efficiency of nitrogen translocation and utilization is extremely important. The objective of this study was to improve the production of ε-PL by overexpressing the ammonium transporter gene amtB in Streptomyces albulus PD-1. Using the recombinant bacteria, the optimum carbon-to-nitrogen ratio in the synthesis stage of fermentation increased from 3 to 4.71, compared with that obtained using the wild-type strain, and the utilization efficiency of ammonium was improved too. Ultimately, the production of ε-PL increased from 22.7 to 35.7 g/L upon fed-batch cultivation in a 5 L bioreactor. Determination of the expression of the genes and enzymes associated with ammonium metabolism and ε-PL synthesis revealed that the overexpression of amtB in S. albulus PD-1 enhanced ε-PL biosynthesis by increasing the activity of the corresponding metabolic pathways. To the best of our knowledge, this is the first report on enhancing ε-PL production by overexpression of the amtB gene in an ε-PL-producing strain.


Subject(s)
Bacterial Proteins , Cation Transport Proteins , Gene Expression , Polylysine/biosynthesis , Streptomyces , Bacterial Proteins/biosynthesis , Bacterial Proteins/genetics , Cation Transport Proteins/biosynthesis , Cation Transport Proteins/genetics , Polylysine/genetics , Streptomyces/enzymology , Streptomyces/genetics
6.
Bioprocess Biosyst Eng ; 38(9): 1705-13, 2015 Sep.
Article in English | MEDLINE | ID: mdl-25969386

ABSTRACT

ε-Poly-L-lysine (ε-PL) has been widely used as food additive. However, the self-inhibition of ε-PL on cell growth limits the accumulation of ε-PL in the wild-type strain. Here, we screened ε-PL-tolerant strain of Streptomyces sp. with higher ε-PL productivity by genome shuffling and studied the mechanism for the improvement. The initial mutant library was constructed by diethyl sulfate mutagenesis. After four rounds of protoplast fusion, a shuffled strain F4-22 with 3.11 g/L ε-PL productivity in shake flask, 1.81-fold in comparison with that of parent strain, was obtained. The higher aspartokinase activity was induced in F4-22 whereas no obvious changes have been found in ε-PL synthetic and degrading enzymes which indicated that the upstream reregulation of the precursor lysine synthesis rather than lysine polymerization or ε-PL degradation in shuffled strain accounted for the higher productivity. The activities of key enzymes in the central metabolic pathway were also enhanced in F4-22 which resulted in increased vigor of the strain and in delayed strain lysis during fermentation. These improved properties of shuffled strain led to the success of combining general two-stage fermentation into one-stage one in 5-L bioreactor with 32.7 % more ε-PL production than that of parent strain. The strategy used in this study provided a novel strain breeding approach of producers which suffered from ε-PL-like self-inhibition of the metabolites.


Subject(s)
DNA Shuffling/methods , Genetic Enhancement/methods , Genome, Bacterial/genetics , Polylysine/biosynthesis , Streptomyces/genetics , Streptomyces/metabolism , Drug Tolerance/genetics , Polylysine/genetics , Recombination, Genetic/genetics , Species Specificity , Streptomyces/isolation & purification
7.
Gene Ther ; 20(3): 318-27, 2013 Mar.
Article in English | MEDLINE | ID: mdl-22673390

ABSTRACT

Conditionally replicating adenoviruses (CRAd) are a promising class of gene therapy agents that can overcome already known glioblastoma (GBM) resistance mechanisms but have limited distribution upon direct intratumoral (i.t.) injection. Collagen bundles in the extracellular matrix (ECM) have an important role in inhibiting virus distribution. In fact, ECM pre-treatment with collagenases improves virus distributions to tumor cells. Matrix metalloproteinases (MMPs) are an endogenous class of collagenases secreted by tumor cells whose function can be altered by different drugs including anti-angiogenic agents, such as bevacizumab. In this study we hypothesized that upregulation of MMP activity during anti-angiogenic therapy can improve CRAd-S-pk7 distribution in GBM. We find that MMP-2 activity in human U251 GBM xenografts increases (*P=0.03) and collagen IV content decreases (*P=0.01) during vascular endothelial growth factor (VEGF-A) antibody neutralization. After proving that collagen IV inhibits CRAd-S-pk7 distribution in U251 xenografts (Spearman rho=-0.38; **P=0.003), we show that VEGF-blocking antibody treatment followed by CRAd-S-pk7 i.t. injection reduces U251 tumor growth more than each individual agent alone (***P<0.0001). Our data propose a novel approach to improve virus distribution in tumors by relying on the early effects of anti-angiogenic therapy.


Subject(s)
Adenoviridae/physiology , Angiogenesis Inhibitors/pharmacology , Collagen/metabolism , Glioma/therapy , Xenograft Model Antitumor Assays , Adenoviridae/genetics , Adenoviridae/metabolism , Animals , Antibodies, Blocking/immunology , Antibodies, Blocking/pharmacology , Cell Line, Tumor , Combined Modality Therapy , Genetic Therapy/methods , Genetic Vectors/administration & dosage , Genetic Vectors/genetics , Glioma/genetics , Glioma/pathology , Humans , Inhibitor of Apoptosis Proteins/genetics , Injections, Intralesional , Kaplan-Meier Estimate , Male , Matrix Metalloproteinase 2/genetics , Matrix Metalloproteinase 2/metabolism , Mice , Mice, Nude , Oncolytic Virotherapy/methods , Polylysine/genetics , Polylysine/metabolism , Promoter Regions, Genetic/genetics , Proteolysis , Survivin , Vascular Endothelial Growth Factor A/immunology , Virus Replication/drug effects
8.
J Antibiot (Tokyo) ; 76(9): 522-531, 2023 09.
Article in English | MEDLINE | ID: mdl-37308604

ABSTRACT

Streptomyces albulus NBRC14147 produces a homopoly(amino acid), ε-poly-L-lysine (ε-PL). Due to its antibiotic activity, thermostability, biodegradability, and non-toxicity to humans, ε-PL is used as a food preservative. In this study, homology searches of diaminopimelate (DAP) pathway genes (dapB and dapE), in an S. albulus genome database, were shown to encode predicted enzymes using dapB or dapE in Escherichia coli strain complementation assays. We observed that dapB and dapE transcriptional levels were weak during ε-PL production stages. Therefore, we strengthened this expression using an ermE constitutive promoter. Engineered strains generated faster growth and ε-PL production rates when compared with the control strain. Moreover, maximum ε-PL yields in S. albulus, where dapB was constitutively expressed, were approximately 14% higher when compared with the control strain. These findings showed that enhanced lysine biosynthetic gene expression generated faster and higher ε-PL production levels.


Subject(s)
Polylysine , Streptomyces , Humans , Fermentation , Gene Expression , Polylysine/genetics , Polylysine/metabolism , Streptomyces/metabolism , Diaminopimelic Acid/metabolism
9.
Biochem Biophys Res Commun ; 423(2): 301-7, 2012 Jun 29.
Article in English | MEDLINE | ID: mdl-22659416

ABSTRACT

T cell activation requires both antigen specific and co-stimulatory signals that include the interaction of CD28 with its ligands CD80 and CD86. These signals are delivered by antigen presenting cells (APC) in the context of the immunological synapse (IS). Reorganization of the cytoskeleton is required for the formation and maintenance of the IS. Our results show that a highly conserved polylysine motif in CD86 cytoplasmic tail, herein referred to as the K4 motif, is responsible for the constitutive association of CD86 to the cytoskeleton in primary human APC as well as in a murine APC model. This motif is not involved in initial APC:T cell conjugate formation but mutation of the K4 motif affects CD86 reorientation at the IS. Importantly, APCs expressing CD86 with mutated K4 motif are severely compromised in their capacity to trigger complete T cell activation upon peptide presentation as measured by IL-2 secretion. Altogether, our results reveal the critical importance of the cytoskeleton-dependent CD86 polarization to the IS and more specifically the K4 motif for effective co-signaling.


Subject(s)
B7-2 Antigen/metabolism , Cytoplasm/immunology , Cytoskeleton/immunology , Immunological Synapses/immunology , Polylysine/metabolism , Amino Acid Motifs , Amino Acid Sequence , Animals , B7-2 Antigen/genetics , Conserved Sequence , Humans , Mice , Molecular Sequence Data , Polylysine/genetics
10.
Protein Expr Purif ; 84(1): 38-46, 2012 Jul.
Article in English | MEDLINE | ID: mdl-22564875

ABSTRACT

In an attempt to produce glucagon-like peptide-1 (GLP-1) using recombinant Escherichia coli, ubiquitin (Ub) as a fusion partner was fused to GLP-1 with the 6-lysine tag (K6) for simple purification. Despite the high solubility of ubiquitin, the fusion protein K6UbGLP-1 was expressed mainly as insoluble inclusion bodies in E. coli. In order to elucidate this phenomenon, various N- and C-terminal truncates and GLP-1 mutants of K6UbGLP-1 were constructed and analyzed for their characteristics by various biochemical and biophysical methods. The experiment results obtained in this study clearly demonstrated that the insoluble aggregation of K6UbGLP-1 was attributed to the electrostatic interaction between the N-terminal 6-lysine tag and the C-terminal GLP-1 before the completion of folding which might be one of the reasons for protein misfolding frequently observed in many foreign proteins introduced with charged amino acid residues such as the His tag and the protease recognition sites. The application of a cation exchanger for neutralizing the positive charge of the 6-lysine tag in solid-phase refolding of K6UbGLP-1 successfully suppressed the electrostatic interaction-driven aggregation even at a high protein concentration, resulting in properly folded K6UbGLP-1 for GLP-1 production.


Subject(s)
Glucagon-Like Peptide 1/chemistry , Inclusion Bodies/metabolism , Polylysine/chemistry , Recombinant Fusion Proteins/chemistry , Ubiquitin/chemistry , Amino Acid Sequence , Base Sequence , Chromatography, Gel , Chromatography, Ion Exchange , Dialysis , Escherichia coli , Glucagon-Like Peptide 1/genetics , Glucagon-Like Peptide 1/metabolism , Humans , Inclusion Bodies/chemistry , Molecular Sequence Data , Polylysine/genetics , Polylysine/metabolism , Protein Refolding , Recombinant Fusion Proteins/genetics , Recombinant Fusion Proteins/metabolism , Reproducibility of Results , Solubility , Static Electricity , Ubiquitin/genetics , Ubiquitin/metabolism
11.
Biomacromolecules ; 13(4): 1024-34, 2012 Apr 09.
Article in English | MEDLINE | ID: mdl-22443494

ABSTRACT

A dual stimulus-responsive mPEG-SS-PLL(15)-glutaraldehyde star (mPEG-SS-PLL(15)-star) catiomer is developed and biologically evaluated. The catiomer system combines redox-sensitive removal of an external PEG shell with acid-induced escape from the endosomal compartment. The design rationale for PEG shell removal is to augment intracellular uptake of mPEG-SS-PLL(15)-star/DNA complexes in the presence of tumor-relevant glutathione (GSH) concentration, while the acid-induced dissociation is to accelerate the release of genetic payload following successful internalization into targeted cells. Size alterations of complexes in the presence of 10 mM GSH suggest stimulus-induced shedding of external PEG layers under redox conditions that intracellularly present in the tumor microenvironment. Dynamic laser light scattering experiments under endosomal pH conditions show rapid destabilization of mPEG-SS-PLL(15)-star/DNA complexes that is followed by facilitating efficient release of encapsulated DNA, as demonstrated by agarose gel electrophoresis. Biological efficacy assessment using pEGFP-C1 plasmid DNA encoding green fluorescence protein and pGL-3 plasmid DNA encoding luciferase as reporter genes indicate comparable transfection efficiency of 293T cells of the catiomer with a conventional polyethyleneimine (bPEI-25k)-based gene delivery system. These experimental results show that mPEG-SS-PLL(15)-star represents a promising design for future nonviral gene delivery applications with high DNA binding ability, low cytotoxicity, and high transfection efficiency.


Subject(s)
Cross-Linking Reagents/chemistry , Disulfides/chemistry , Gene Transfer Techniques , Genetic Vectors/chemistry , Imines/chemistry , Polylysine/chemistry , Cations/chemical synthesis , Cations/chemistry , Cations/pharmacology , Cell Survival/drug effects , Cross-Linking Reagents/chemical synthesis , Cross-Linking Reagents/pharmacology , Disulfides/pharmacology , Genetic Vectors/chemical synthesis , Genetic Vectors/pharmacology , Glutaral/chemistry , Glutaral/pharmacology , HEK293 Cells , HeLa Cells , Humans , Imines/pharmacology , Molecular Structure , Oxidation-Reduction , Particle Size , Polyethylene Glycols/chemistry , Polyethylene Glycols/pharmacology , Polylysine/genetics , Surface Properties
12.
Bioprocess Biosyst Eng ; 34(7): 833-9, 2011 Sep.
Article in English | MEDLINE | ID: mdl-21409451

ABSTRACT

Lipase (EC 3.1.1.3) is a popular enzyme used as an ingredient in detergents and biocatalyst in many biochemical reactions. Lipase is usually expressed in Escherichia coli as an inactive inclusion body and at a low level. In this study, Candida antarctica lipase B (CalB) was fused with various polycationic amino acid tags and expressed in E. coli in order to increase a soluble expression level. By induction with 1.0 mM IPTG, the authentic and fused CalBs were expressed at 27-56% of total protein. The 10-arginine and 10-lysine tags fused at the C-terminal of CalB significantly increased the solubility of CalB by five- to ninefold, relative to the case of the authentic CalB expressed in a recombinant E. coli Origami 2™ (DE3) strain. Among a series of the C-terminal poly-arginine tags, the recombinant CalB combined with the 10-arginine tag (CalB-R10) possessed the highest lipase specific activity of 9.5 ± 0.03 U/mg protein, corresponding to a fourfold enhancement compared with the authentic CalB.


Subject(s)
Escherichia coli/enzymology , Inclusion Bodies/enzymology , Lipase/biosynthesis , Amino Acids/genetics , Amino Acids/metabolism , Escherichia coli/genetics , Fungal Proteins , Lipase/genetics , Peptides/genetics , Peptides/metabolism , Polyamines/chemistry , Polyelectrolytes , Polylysine/genetics , Polylysine/metabolism , Recombinant Fusion Proteins/biosynthesis , Recombinant Fusion Proteins/genetics , Solubility
13.
J Allergy Clin Immunol ; 124(1): 108-13, 2009 Jul.
Article in English | MEDLINE | ID: mdl-19423156

ABSTRACT

BACKGROUND: Treatment of IgE-mediated food allergy with standard protein-based allergen immunotherapy has proved both unsuccessful and hazardous. Allergen gene vaccination represents a promising alternative, but difficulties in gene targeting and expression in antigen-presenting cells represent a major limitation for efficient gene vaccination. OBJECTIVE: We sought to construct a genetically engineered human epsilon-polylysine (EPL) fusion protein that binds allergen gene expression systems and targets the gene vaccine complex to antigen-presenting cells through the interaction of EPL and the high-affinity receptor for IgE for efficient allergen gene vaccination. METHODS: Genetic engineering was used to design and produce the EPL fusion gene, consisting of the human CHepsilon2-4 linked to 55 lysine residues, and the conventional approaches were used to characterize the biologic features of EPL. RESULTS: EPL was assembled as functional dimers and capable of binding DNA plasmids in both an EPL protein and plasmid DNA concentration-dependent manner. EPL targeted plasmid DNA to the high-affinity receptor for IgE on cell surfaces and increased the model gene uptake/expression. The EPL-DNA complexes were shown not to trigger mast cell degranulation. CONCLUSION: EPL is able to function as a gene carrier system to target allergen gene to the high-affinity receptor for IgE-expressing cells through ligand receptor-mediated interactions.


Subject(s)
Antigen-Presenting Cells/drug effects , Desensitization, Immunologic , Drug Delivery Systems , Immunoglobulin E/therapeutic use , Receptors, IgE/drug effects , Vaccines, DNA/pharmacology , Animals , Blotting, Western , CHO Cells , Cricetinae , Cricetulus , Humans , Mice , Polylysine/genetics , Recombinant Proteins/immunology
14.
Small GTPases ; 11(3): 220-224, 2020 05.
Article in English | MEDLINE | ID: mdl-29239694

ABSTRACT

Ras proteins must localize to the plasma membrane (PM) for biological function. The membrane anchor of the K-Ras4B isoform comprises a farnesylated and methylated C-terminal cysteine together with an adjacent hexa-lysine polybasic domain (PBD). Traditionally, polybasic sequences have been thought to interact electrostatically with negatively charged membranes showing no specificity for anionic lipid head groups. By contrast we recently showed that the K-Ras membrane anchor actually exhibits a very high degree of specificity for phosphatidylserine (PtdSer). The selectivity for PtdSer is determined by a combinatorial code comprising the PBD sequence plus the prenyl anchor. Lipid binding specificity is therefore altered by PBD point mutations that in turn modulate signaling output. For example, mutating Lys177 or Lys178 to glutamine switches K-Ras4B lipid affinity from PtdSer to phosphoinositol 4,5-bisphosphate (PIP2). Changing the lipid anchor from farnesyl to geranylgeranyl or the PBD lysines to arginines also changes lipid binding specificity. All-atom molecular dynamics simulations reveal the structural basis for these K-Ras anchor lipid-binding preferences. Here we examine the PM interactions of a series of geranylgeranylated PBD mutants and provide further evidence that the precise PBD sequence and prenyl lipid determines lipid sorting specificity of the K-Ras anchor and hence biological function.


Subject(s)
Cell Membrane/metabolism , Lipids/chemistry , Neoprene/metabolism , Polylysine/metabolism , Proto-Oncogene Proteins p21(ras)/metabolism , Binding Sites , Humans , Neoprene/chemistry , Polylysine/chemistry , Polylysine/genetics
15.
Biomater Sci ; 8(6): 1759-1770, 2020 Mar 17.
Article in English | MEDLINE | ID: mdl-32010909

ABSTRACT

Currently, bioengineered apoferritin nanocages with flexible protein shells and functionalized modifications have become an attractive approach for efficient anti-tumor therapy. Here, we modified the N-terminus of H-chain subunits in apoferritin with different amounts of lysine via genetic recombination to obtain a poly(l-lysine) modified H-chain apoferritin (nL-HFn) nanocage for siRNA delivery and gene therapy. To achieve excellent cellular affinity and uptake, the nanocarriers were internalized through transferrin receptor-mediated endocytosis, then escaped from the endosome for cytoplasmic transport. Compared with natural apoferritin, the siRNA-loaded genetic recombination NPs modified with lysine exhibit stronger RNA-interference and antitumor efficiency both in vitro and in 4T1 tumor model mice. Therefore, bioengineered apoferritin nanocages modified with lysine might be a promising platform for nucleic acid drug delivery.


Subject(s)
Apoferritins/genetics , Breast Neoplasms/therapy , Polylysine/genetics , Receptors, Transferrin/antagonists & inhibitors , Animals , Apoferritins/chemistry , Breast Neoplasms/genetics , Capsid/chemistry , Cell Line, Tumor , Endocytosis , Female , Genetic Therapy , HeLa Cells , Humans , Mice , Nanoparticles , Particle Size , RNA, Small Interfering/genetics , Recombination, Genetic , Xenograft Model Antitumor Assays
16.
Genesis ; 47(5): 337-45, 2009 May.
Article in English | MEDLINE | ID: mdl-19358157

ABSTRACT

The synaptic vesicle protein, synaptotagmin I, is a multifunctional protein required for several steps in the synaptic vesicle cycle. It is primarily composed of two calcium-binding domains, C(2)A and C(2)B. Within each of these domains, a polylysine motif has been identified that is proposed to mediate specific functions within the synaptic vesicle cycle. While the C(2)B polylysine motif plays an important role in synaptic transmission in vivo, the C(2)A polylysine motif has not previously been analyzed at an intact synapse. Here, we show that mutation of the C(2)A polylysine motif increases the frequency of spontaneous transmitter release in vivo. The increased frequency is not a developmental consequence of disrupted synaptic transmission, as evoked transmitter release is unimpaired in the mutants. Our results demonstrate that synaptotagmin I plays a direct role in regulating spontaneous transmitter release, indicative of an active role in synaptic vesicle stabilization mediated by the C(2)A polylysine motif.


Subject(s)
Calcium/metabolism , Polylysine/genetics , Synaptic Vesicles/metabolism , Synaptotagmin I/metabolism , Amino Acid Sequence , Animals , Binding Sites/genetics , Drosophila melanogaster/genetics , Drosophila melanogaster/metabolism , Drosophila melanogaster/ultrastructure , Electrophysiology , Excitatory Postsynaptic Potentials , Immunoblotting , Microscopy, Electron , Models, Molecular , Molecular Sequence Data , Mutation , Protein Structure, Tertiary , Sequence Homology, Amino Acid , Synaptic Transmission , Synaptic Vesicles/physiology , Synaptotagmin I/chemistry , Synaptotagmin I/genetics
17.
Methods Mol Biol ; 366: 321-30, 2007.
Article in English | MEDLINE | ID: mdl-17568133

ABSTRACT

Neonatal rat ventricular myocytes (NRVMs) cultured in vitro have been used as a model system for easily recreating and studying several cardiac molecular conditions, such as hypertrophy, oxygen deprivation, and gene expression. However, low efficiency of gene transfer has often represented one of the major limitations of this technique. In this chapter we describe in detail how to isolate NRVMs from neonatal rat heart and the optimal conditions for their long-term culture. Different cardiomyocyte transfection methodologies, based on viral or viral/chemical delivery carriers, are also discussed.


Subject(s)
Gene Transfer Techniques , Myocytes, Cardiac/cytology , Adenoviridae/genetics , Animals , Animals, Newborn , Cells, Cultured , Heart Ventricles/metabolism , Hypertrophy , Myocytes, Cardiac/metabolism , Polylysine/genetics , Rats , Rats, Sprague-Dawley
18.
Cancer Biol Ther ; 18(8): 560-570, 2017 Aug 03.
Article in English | MEDLINE | ID: mdl-28692326

ABSTRACT

BACKGROUND: Eukaryote initiation factor 2 subunit ß (eIF2ß) plays a crucial role in regulation protein synthesis, which mediates the interaction of eIF2 with mRNA. eIF2ß contains evolutionarily conserved polylysine stretches in amino-terminal region and a zinc finger motif in the carboxy-terminus. METHODS: The gene eIF2ß was cloned under tetracycline transcription control and the polylysine stretches were deleted by site-directed mutagenesis (eIF2ßΔ3K). The plasmid was transfected into HEK 293 TetR cells. These cells were analyzed for their proliferative and translation capacities as well as cell death rate. Experiments were performed using gene reporter assays, western blotting, flow cytometry, cell sorting, cell proliferation assays and confocal immunofluorescence. RESULTS: eIF2ßΔ3K affected negatively the protein synthesis, cell proliferation and cell survival causing G2 cell cycle arrest and increased cell death, acting in a negative dominant manner against the native protein. Polylysine stretches are also essential for eIF2ß translocated from the cytoplasm to the nucleus, accumulating in the nucleolus and eIF2ßΔ3K did not make this translocation. DISCUSSION: eIF2ß is involved in the protein synthesis process and should act in nuclear processes as well. eIF2ßΔ3K reduces cell proliferation and causes cell death. Since translation control is essential for normal cell function and survival, the development of drugs or molecules that inhibit translation has become of great interest in the scenario of proliferative disorders. In conclusion, our results suggest the dominant negative eIF2ßΔ3K as a therapeutic strategy for the treatment of proliferative disorders and that eIF2ß polylysine stretch domains are promising targets for this.


Subject(s)
Cell Proliferation/genetics , Eukaryotic Initiation Factor-2B/genetics , G2 Phase Cell Cycle Checkpoints/genetics , Polylysine/genetics , Protein Biosynthesis/genetics , Sequence Deletion/genetics , Apoptosis/genetics , Binding Sites , Cell Nucleus/metabolism , Cell Survival/genetics , Cytoplasm/metabolism , Eukaryotic Initiation Factor-2B/metabolism , HEK293 Cells , Humans , Molecular Targeted Therapy/methods , Mutagenesis, Site-Directed , Neoplasms/therapy , Protein Binding , Protein Transport , RNA, Messenger/metabolism
19.
Appl Biochem Biotechnol ; 178(7): 1445-57, 2016 Apr.
Article in English | MEDLINE | ID: mdl-26749294

ABSTRACT

ε-Poly-L-lysine (ε-PL) is a widely used natural food preservative. To test the effects of the Vitreoscilla hemoglobin (VHb) and S-adenosylmethionine (SAM) on ε-PL synthesis in Streptomyces albulus NK660, the heterologous VHb gene (vgb) and SAM synthetase gene (metK) were inserted into the S. albulus NK660 chromosome under the control of the constitutive ermE* promoter. CO-difference spectrum analysis showed S. albulus NK660-VHb strain could express functional VHb. S. albulus NK660-VHb produced 26.67 % higher ε-PL and 14.57 % higher biomass than the wild-type control, respectively. Reversed-phase high-pressure liquid chromatography (RP-HPLC) results showed the overexpression of the metK gene resulted in increased intracellular SAM synthesis in S. albulus NK660-SAM, which caused increases of biomass as well as the transcription level of ε-PL synthetase gene (pls). Results indicated that the expression of vgb and metK gene improved on ε-PL synthesis and biomass for S. albulus NK660, respectively.


Subject(s)
Bacterial Proteins/genetics , Methionine Adenosyltransferase/genetics , Polylysine/biosynthesis , Streptomyces/genetics , Truncated Hemoglobins/genetics , Fermentation , Food Preservatives , Gene Transfer Techniques , Polylysine/genetics , S-Adenosylmethionine/metabolism , Streptomyces/metabolism
20.
PLoS One ; 11(9): e0161730, 2016.
Article in English | MEDLINE | ID: mdl-27603520

ABSTRACT

Myeloid dendritic cells (mDCs) contribute to both HIV pathogenesis and elicitation of antiviral immunity. Understanding how mDC responses to stimuli shape HIV infection outcomes will inform HIV prevention and treatment strategies. The long double-stranded RNA (dsRNA) viral mimic, polyinosinic polycytidylic acid (polyIC, PIC) potently stimulates DCs to focus Th1 responses, triggers direct antiviral activity in vitro, and boosts anti-HIV responses in vivo. Stabilized polyICLC (PICLC) is being developed for vaccine adjuvant applications in humans, making it critical to understand how mDC sensing of PICLC influences HIV infection. Using the monocyte-derived DC (moDC) model, we sought to describe how PICLC (vs. other dsRNAs) impacts HIV infection within DCs and DC-T cell mixtures. We extended this work to in vivo macaque rectal transmission studies by administering PICLC with or before rectal SIVmac239 (SIVwt) or SIVmac239ΔNef (SIVΔNef) challenge. Like PIC, PICLC activated DCs and T cells, increased expression of α4ß7 and CD169, and induced type I IFN responses in vitro. The type of dsRNA and timing of dsRNA exposure differentially impacted in vitro DC-driven HIV infection. Rectal PICLC treatment similarly induced DC and T cell activation and pro- and anti-HIV factors locally and systemically. Importantly, this did not enhance SIV transmission in vivo. Instead, SIV acquisition was marginally reduced after a single high dose challenge. Interestingly, in the PICLC-treated, SIVΔNef-infected animals, SIVΔNef viremia was higher, in line with the importance of DC and T cell activation in SIVΔNef replication. In the right combination anti-HIV strategy, PICLC has the potential to limit HIV infection and boost HIV immunity.


Subject(s)
Carboxymethylcellulose Sodium/analogs & derivatives , HIV Infections/therapy , Lymphocyte Activation/immunology , Poly I-C/genetics , Polylysine/analogs & derivatives , RNA, Double-Stranded/genetics , Animals , Carboxymethylcellulose Sodium/administration & dosage , Dendritic Cells/drug effects , Dendritic Cells/immunology , Dendritic Cells/virology , HIV Infections/genetics , HIV Infections/immunology , HIV Infections/transmission , HIV-1/genetics , Humans , Interferon Type I/genetics , Lymphocyte Activation/genetics , Macaca/immunology , Macaca/virology , Monocytes/drug effects , Monocytes/immunology , Myeloid Cells/drug effects , Myeloid Cells/immunology , Myeloid Cells/virology , Poly I-C/administration & dosage , Polylysine/administration & dosage , Polylysine/genetics , RNA, Double-Stranded/administration & dosage , Simian Immunodeficiency Virus/genetics , Th1 Cells/drug effects , Th1 Cells/immunology
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