Mobility, speciation of cadmium, and bacterial community composition along soil depths during microbial carbonate precipitation under simulated acid rain.

An overexploitation of earth resources results in acid deposition in soil, which adversely impacts soil ecosystems and biodiversity and affects conventional heavy metal remediation using immobilization. A series of column experiments was conducted in this study to compare the cadmium (Cd) retention stability through biotic and abiotic carbonate precipitation impacted by simulated acid rain (SAR), to build a comprehensive understanding of cadmium speciation and distribution along soil depth and to elucidate the biogeochemical bacteria-soil-heavy metal interfaces. The strain of Sporosarcina pasteurii DSM 33 was used to trigger the biotic carbonate precipitation and cultivated throughout the 60-day column incubation. Results of soil pH, electrical conductivity (EC), and quantitative CdCO3/CaCO3 analysis concluded that the combination of biotic and abiotic soil treatment could reinforce soil buffering capacity as a strong defense mechanism against acid rain disturbance. Up to 1.8 ± 0.04 U/mg urease enzyme activity was observed in combination soil from day 10, confirming the sustained effect of urease-mediated microbial carbonate precipitation. Cadmium speciation and distribution analyses provided new insights into the dual stimulation of carbonate-bound and Fe/Mn-bound phases of cadmium immobilization under microbially induced carbonate precipitation (MICP). As confirmed by the microbial community analysis, outsourcing urea triggered diverse microbial metabolic responses, notably carbonate precipitation and dissimilatory iron metabolism, in both oxygen-rich topsoil and oxygen-depleted subsurface layers. The overall investigation suggests the feasibility of applying MICP for soil Cd remediation under harsh environments and stratagem by selecting microbial functionality to overcome environmental challenges.

Ureolytic bacteria from electronic waste area, their biological robustness against potentially toxic elements and underlying mechanisms.

Ureolytic bacteria can be a promising mediator used for the immobilization of potentially toxic elements via microbially-induced carbonate precipitation (MICP) process from biodegradable ions to carbonate form. Electronic waste (E-waste) environment is very complex compared to general metal contaminated soil, however, MICP has not been studied under such an environment. In this study, three bacterial strains were successfully isolated from an E-waste area in Guiyu, China, and indicated to have positive ureolytic behavior with significant heavy metal resistance (specific to Cu and Pb), among which, a strain of Lysinibacillus sp. was proven to show a great persistence in heavy metal immobilization. This featured strain can tolerate up to 100 ppm copper and 1000 ppm lead according to minimal inhibitory concentration (MIC) results, and its urease activity was well-adapted to metal effects. Results also revealed the positive correlation (R2 = 0.9819) between metal concentrations and surface layer protein content present in bacterial cells. The underlying mechanism on the role of S-layer protein in heavy metal immobilization during biocalcification was elucidated. The metabolic system of heavy metal resistance for these E-waste derived isolates is novel and represents a point of interest for possible environmental applications to immobilize toxic heavy metals from electronic waste sites.

Biosurfactants: Eco-Friendly and Innovative Biocides against Biocorrosion.

Corrosion influenced by microbes, commonly known as microbiologically induced corrosion (MIC), is associated with biofilm, which has been one of the problems in the industry. The damages of industrial equipment or infrastructures due to corrosion lead to large economic and environmental problems. Synthetic chemical biocides are now commonly used to prevent corrosion, but most of them are not effective against the biofilms, and they are toxic and not degradable. Biocides easily kill corrosive bacteria, which are as the planktonic and sessile population, but they are not effective against biofilm. New antimicrobial and eco-friendly substances are now being developed. Biosurfactants are proved to be one of the best eco-friendly anticorrosion substances to inhibit the biocorrosion process and protect materials against corrosion. Biosurfactants have recently became one of the important products of bioeconomy with multiplying applications, while there is scare knowledge on their using in biocorrosion treatment. In this review, the recent findings on the application of biosurfactants as eco-friendly and innovative biocides against biocorrosion are highlighted.

Biostimulation of calcite precipitation process by bacterial community in improving cement stabilized rammed earth as sustainable material.

Rammed earth has been enjoying a renaissance as sustainable construction material with cement stabilized rammed earth (CSRE). At the same time, it is important to convert CSRE to be a stronger, durable, and environment-friendly building material. Bacterial application is established to improve cementitious materials; however, bioaugmentation is not widely acceptable by engineering communities. Hence, the present study is an attempt applying biostimulation approach to develop CSRE as sustainable construction material. Results showed that biostimulation improved the compressive strength of CSRE by 29.6% and resulted in 27.7% lower water absorption compared to control. The process leading to biocementation in improving CSRE was characterized by Fourier transform infrared spectroscopy, X-ray diffraction, and scanning electron microscope-energy dispersive spectrometer. Further, Illumina MiSeq sequencing was used to investigate changes in bacterial community structures after biostimulation that identified majority of ureolytic bacteria dominated by phylum Firmicutes and genus Sporosarcina playing role in biocementation. The results open a way applying biological principle that will be acceptable to a wide range of civil engineers.

Microbially-induced Carbonate Precipitation for Immobilization of Toxic Metals.

Rapid urbanization and industrialization resulting from growing populations contribute to environmental pollution by toxic metals and radionuclides which pose a threat to the environment and to human health. To combat this threat, it is important to develop remediation technologies based on natural processes that are sustainable. In recent years, a biomineralization process involving ureolytic microorganisms that leads to calcium carbonate precipitation has been found to be effective in immobilizing toxic metal pollutants. The advantage of using ureolytic organisms for bioremediating metal pollution in soil is their ability to immobilize toxic metals efficiently by precipitation or coprecipitation, independent of metal valence state and toxicity and the redox potential. This review summarizes current understanding of the ability of ureolytic microorganisms for carbonate biomineralization and applications of this process for toxic metal bioremediation. Microbial metal carbonate precipitation may also be relevant to detoxification of contaminated process streams and effluents as well as the production of novel carbonate biominerals and biorecovery of metals and radionuclides that form insoluble carbonates.

A comparison of the potential health risk of aluminum and heavy metals in tea leaves and tea infusion of commercially available green tea in Jiangxi, China.

Heavy metals and Al in tea products are of increasing concern. In this study, contents of Al, Cd, Co, Cr, Cu, Ni, and Pb in commercially available green tea and its infusions were measured by ICP-MS and ICP-AES. Both target hazard quotient (THQ) and hazard index (HI) were employed to assess the potential health risk of studied metals in tea leaves and infusions to drinkers. Results showed that the average contents of Al, Cd, Co, Cr, Cu, Ni, and Pb in tea leaves were 487.57, 0.055, 0.29, 1.63, 17.04, 7.71, and 0.92 mg/kg, respectively. Except for Cu, metal contents were within their maximum limits (1, 5, 30, and 5 mg/kg for Cd, Cr, Cu, and Pb, respectively) of current standards for tea products. Concentrations of metals in tea infusions were all below their maximum limits (0.2, 0.005, 0.05, 1.0, 0.02, and 0.01 mg/L for Al, Cd, Cr(VI), Cu, Ni, and Pb, respectively) for drinking water, and decreased with the increase of infusion times. Pb, Cd, Cu, and Al mainly remained in tea leaves. The THQ from 2.33 × 10(-5) to 1.47 × 10(-1) and HI from1.41 × 10(-2) to 3.45 × 10(-1) values in tea infusions were all less than 1, suggesting that consumption of tea infusions would not cause significant health risks for consumers. More attention should be paid to monitor Co content in green tea. Both THQ and HI values decreased with the increase of infusion times. Results of this study suggest that tea drinkers should discard the first tea infusion and drink the following infusions.

Potential for nutrient removal by integrated remediation methods in a eutrophicated artificial lake - a case study in Dishui Lake, Lingang New City, China.

A new integrated water remediation technology, including a floating bed, a buffer zone of floating plants, enclosed 'water hyacinth' purification, economic aquatic plants and near-shore aquatic plant purification, was used in Dishui Lake to improve its water quality. A channel of 1,000 m length and 30 m width was selected to implement pilot-scale experiments both in the static period and the continuous water diversion period. The results showed that the new integrated water remediation technology exhibited the highest removal rate for permanganate index in a static period, which achieved 40.6%. The average removal rates of total nitrogen (TN), ammonia nitrogen (NH3-N) and total phosphorus (TP) in a static period were 23.2, 21.6 and 19.1%, respectively. However, it did not exhibit an excellent removal rate for pollutants in the continuous water diversion period. The average removal rates for all pollutants were below 10%. In winter, the new integrated remediation technology showed efficient effects compared to others. The average removal rate for CODMn, TN, NH3-N and TP were 7, 5.3, 7.6 and 6.5%, respectively. Based on our results, the new integrated water remediation technology was highly efficient as a purification system, especially during the static period in winter.

Analysis of SIKVAV's receptor affinity, pharmacokinetics, and pharmacological characteristics: a matrikine with potent biological function.

Matrikines are biologically active peptides generated from fragments fragmentation of extracellular matrix components (ECM) that are functionally distinct from the original full-length molecule. The active matricryptic sites can be unmasked by ECM components enzymatic degradation or multimerization, heterotypic binding, adsorption to other molecules, cell-mediated mechanical forces, exposure to reactive oxygen species, ECM denaturation, and others. Laminin α1-derived peptide (SIKVAV) is a bioactive peptide derived from laminin-111 that participates in tumor development, cell proliferation, angiogenesis in various cell types. SIKVAV has also a potential pharmaceutical activity that may be used for tissue regeneration and bioengineering in Alzheimer's disease and muscular dystrophies. In this work, we made computational analyzes of SIKVAV regarding the ADMET panel, that stands for Administration, Distribution, Metabolism, Excretion, and Toxicity. Docking analyzes using the α3ß1 and α6ß1 integrin receptors were performed to fill in the gaps in the SIKVAV's signaling pathway and coupling tests showed that SIKVAV can interact with both receptors. Moreover, there is no indication of cytotoxicity, mutagenic or carcinogenic activity, skin or oral sensitivity. Our analysis suggests that SIKVAV has a high probability of interacting with peroxisome proliferator-activated receptor-gamma (NR-PPAR-γ), which has anti-inflammatory activity. The results of bioinformatics can help understand the participation of SIKVAV in homeostasis and influence the understanding of how this peptide can act as a biological asset in the control of dystrophies, neurodegenerative diseases, and tissue engineering.Communicated by Ramaswamy H. Sarma.

Self-assembled silk fibroin cross-linked with genipin supplements microbial carbonate precipitation in building material.

The process of microbially induced carbonate precipitation (MICP) is known to effectively improve engineering properties of building materials and so does silk fibroin (SF). Thus, in this study, an attempt was taken to see the improvement in sand, that is, basic building material coupled with MICP and SF. Urease producing Bacillus megaterium was utilized for MICP in Nutri-Calci medium. To improve the strength of SF itself in bacterial solution, it was cross-linked with genipin at the optimized concentration of 3.12 mg/mL. The Fourier transform infrared (FTIR) spectra confirmed the crosslinking of SF with genipin in bacterial solution. In order to understand how such cross-linking can improve engineering properties, sand moulds of 50 mm3 dimension were prepared that resulted in 35% and 55% more compressive strength than the one prepared with bacterial solution with SF and bacterial solution only, respectively with higher calcite content in former one. The FTIR, SEM, x-ray powder diffraction spectrometry and x-ray photoelectron spectroscopy analyses confirmed higher biomineral precipitation in bacterial solution coupled with genipin cross-linked SF. As the process of MICP is proven to replace cement partially from concrete without negatively influence mechanical properties, SF cross-linked with genipin can provide additional significance in developing low-carbon cement-based composites.

Proteomic analysis of Mn-induced resistance to powdery mildew in grapevine.

Previous studies documented that metal hyperaccumulation armours plants with direct defences against pathogens. In the present study, it was found that high leaf Mn concentrations (<2500 µg g(-1)) induced grapevine resistance to powdery mildew [Uncinula necator (Schw.) Burr]. Manganese delayed pathogen spreading after powdery mildew (PM) inoculation, but did not directly inhibit pathogen growth on a long-term basis. It was postulated that the grapevine resistance resulted from the induction of protective mechanisms in planta. To test this hypothesis, the proteome profile was analysed by Difference Gel Electrophoresis (DIGE) methods to identify proteins that are putatively involved in pathogen resistance. A high Mn concentration caused little oxidative pressure in grapevine, but oxidative stress was deeply enhanced by PM stress. Except for a few proteins that were related to oxidative pressure and proteins specially regulated by Mn or PM, most of the detected proteins exhibited similar changes under excess Mn stress and under PM stress, suggesting that similar signalling processes mediate the responses to the two stresses. As well as PM stress, high leaf Mn concentration significantly enhanced salicylic acid concentration and increased the expression of proteins involved in ethylene and jasmonic acid synthesis. The proteins related to pathogen resistance were also enhanced by excess Mn, including a PR-like protein, an NBS-LRR analogue, and a JOSL protein, and this was accompanied by the increased activity of phenylalanine ammonia lyase. It was concluded that high leaf Mn concentration triggered protective mechanisms against pathogens in grapevine.

Biochemical composite material using corncob powder as a carrier material for ureolytic bacteria in soil cadmium immobilization.

Corncob powder possessing its superiority in environmental sustainability and cost, was approved with strong capability of being a replacement of biochar in facilitating the microbial carbonate precipitation process. In this study, the ureolytic bacterial strain Bacillus sp. WA isolated from a pre-acquired metal contaminated soil in Guiyu, China, was showed to be well attached on the surfaces of corncob powder, indicating the carrier's role as a durable shelter for bacterial cells. The efficient immobilization helped develop biochemical composite material (BCM) and proven to function better the calcite precipitation. Afterwards, the mechanism and multi-directional benefits of BCM in edaphic cadmium remediation were examined through pot experiment and compared with corncob powder/bacterial strain/nutrient media as control groups. Integrated lab-scale analyses emphasized the advantages of BCM by the maximum soil urease activity (up to 3.440 U/mg and increased by 214% in 28 days), maximal bacterial propagation (most abundant population in fluorescence microscopy), richest surface functional group (most remarkable OC bond and CO bond in FTIR result), notable calcite precipitation (clear calcite crystals on the surface of BCM compared to control group under SEM-EDS), and highest Cd immobilization rate (exchangeable Cd decreased by 68.54%), among all treatments. The pH and electroconductivity measurements additionally led to the mechanism of corncob powder and NBU promoting pre-existed ureolytic bacteria in soil, which demonstrated the added value of corncob to be fine carbon source and residence shelter for soil microorganism, revealing its potential in developing agricultural materials.

Whole cell evaluation and the enzymatic kinetic study of urease from ureolytic bacteria affected by potentially toxic elements.

Microbially induced carbonate precipitation (MICP) is a biomineralization process that has various applications in environmental pollution remediation and restoration of a range of building materials. In this study, a ureolytic bacterium, Lysinibacillus sp. GY3, isolated from an E-waste site, was found as a promising catalyst for remediation of heavy metals via the MICP process. This bacterial isolate produced significant amounts of urease and showed a great persistence in immobilization of potentially toxic elements. A reference ureolytic strain, Bacillus megaterium VS1, was selected in order to compare the efficiency of Lysinibacillus sp. GY3. Study on urease localization indicated 80 % more urease activity secreted extracellularly as for Lysinibacillus sp. GY3 compared to B. megaterium VS1. From the investigation on effects of metals on both intra- and extra-cellular urease, it was clear that Lysinibacillus sp. GY3 produced the most stable urease under conditions of metal pressure, especially retaining more than 70 % activity in the presence of 1 g/L Pb2+ and Zn2+. These results suggest that this isolated microorganism could be promisingly introduced in the MICP process to stabilize complex heavy metal pollutions, with reference to the regulating ability under harsh conditions to stabilize urease activity. This species is so important both for its biological features and environmental impacts. In addition, the present study will bring new insight in the field of metal remediation coupled with enzyme engineered biotechnology.

Characterization of urease and carbonic anhydrase producing bacteria and their role in calcite precipitation.

Urease and carbonic anhydrase (CA) are key enzymes in the chemical reaction of living organisms and have been found to be associated with calcification in a number of microorganisms and invertebrates. Three bacterial strains designated as AP4, AP6, and AP9 were isolated from highly alkaline soil samples using the enrichment culture technique. On the basis of various physiological tests and 16S rRNA sequence analysis, these three bacteria were identified as Bacillus sp., B. megaterium, and B. simplex. Further, these Bacillus species have been characterized for the production of urease and CA in the process of biocalcification. One of the isolates, AP6 produced 553 U/ml of urease and 5.61 EU/ml CA. All the strains were able to produce significant amount of exopolymeric substances and biofilm. Further, efficacy of these strains was tested for calcite production ability and results were correlated with urease and CA. Isolate AP6 precipitated 2.26 mg calcite/cell dry mass (mg). Our observations strongly suggest that it is not only urease but CA also plays an important role in microbially induced calcium carbonate precipitation process. The current work demonstrates that urease and CA producing microbes can be utilized in biocalcification as a sealing agent for filling the gaps or cracks and fissures in constructed facilities and natural formations alike.

Plant high tolerance to excess manganese related with root growth, manganese distribution and antioxidative enzyme activity in three grape cultivars.

The cuttings of grape (Vitis vinifera Linn.) were exposed to Hoagland's solution containing five different manganese (Mn) concentrations to investigate Mn toxicity and the possible detoxifying responses. Three genotypes (i.e. cultivars Combiner, Jingshou and Shuijing) were used in present study. The results showed that grape species is highly tolerant to excess Mn. The plant growth is stimulated by as high as 15 or 30 mM Mn, and then depressed by higher Mn levels. The grape tolerance to excess Mn is related with plant capacity to keep constant or increased root growth as well as to keep high root activity. Also, the grape could employ some effective but intraspecific strategies to detoxify cellular Mn stress by excluding excess Mn out of leaf tissues or by enhancing antioxidative capacity. On the other hand, the present study showed that there existed different (or contrast) distribution pattern for excess Mn in grape. Majority of Mn was transferred and accumulated in the above-ground part in Combiner while Jingshou stored most Mn in root systems. For the first time our result showed the extreme tolerance and contrast performance at Mn translocation in an important fruit species with revealed genomic information.

A critical review on microbial carbonate precipitation via denitrification process in building materials.

The naturally occurring biomineralization or microbially induced calcium carbonate (MICP) precipitation is gaining huge attention due to its widespread application in various fields of engineering. Microbial denitrification is one of the feasible metabolic pathways, in which the denitrifying microbes lead to precipitation of carbonate biomineral by their basic enzymatic and metabolic activities. This review article explains all the metabolic pathways and their mechanism involved in the MICP process in detail along with the benefits of using denitrification over other pathways during MICP implementation. The potential application of denitrification in building materials pertaining to soil reinforcement, bioconcrete, restoration of heritage structures and mitigating the soil pollution has been reviewed by addressing the finding and limitation of MICP treatment. This manuscript further sheds light on the challenges faced during upscaling, real field implementation and the need for future research in this path. The review concludes that although MICP via denitrification is an promising technique to employ it in building materials, a vast interdisciplinary research is still needed for the successful commercialization of this technique.

Characterization of two urease-producing and calcifying Bacillus spp. isolated from cement.

Two bacterial strains designated as CT2 and CT5 were isolated from highly alkaline cement samples using the enrichment culture technique. On the basis of various physiological tests and 16S rRNA sequence analysis, the bacteria were identified as Bacillus species. The urease production was 575.87 U/ml and 670.71 U/ml for CT2 and CT5 respectively. Calcite constituted 27.6% and 31% of the total weight of sand samples plugged by CT2 and CT5, respectively. Scanning electron micrography (SEM) analysis revealed the direct involvement of these isolates in calcite precipitation. This is the first report of the isolation and identification of Bacillus species from cement. Based on the ability of these bacteria to tolerate extreme environment of cement, they have potential to be used in remediating the cracks and fissures in various building or concrete structures.

Environmental and health impacts due to e-waste disposal in China - A review.

E-waste is discarded and shipped mostly to developing countries located in Asian continent for disposal from other developed countries. Especially 70% of the world's e-waste ends up in Guiyu, a small town located in Guangdong Province of China. As little as 25% is recycled in formal recycling centers with adequate protection for workers and the other e-waste arrived in those areas is not handled in organized manner. As per reports only roughly 12.5% of e-waste is actually recycled, and the recycling efforts in those regions are primitive and result in toxic substances being leached into the surrounding ecosystems. In addition to persistent organic pollutants, there are many heavy metals found in the ground and river sediments in Guiyu, exceeding the threshold set to protect human health. Those areas are no longer suitable for growing food, and water is unsafe for drinking, due to the amount of toxins leached into the groundwater and land. Hazardous threats to environment and human health due to hazardous substances of e-waste all around China, as well as the current e-waste management were documented in this review. The article concludes with controlled contamination sources, and eco-friendly and efficient remediation technologies to solve e-waste problem in China.

The Potential of Microbial Fuel Cells for Remediation of Heavy Metals from Soil and Water-Review of Application.

The global energy crisis and heavy metal pollution are the common problems of the world. It is noted that the microbial fuel cell (MFC) has been developed as a promising technique for sustainable energy production and simultaneously coupled with the remediation of heavy metals from water and soil. This paper reviewed the performances of MFCs for heavy metal removal from soil and water. Electrochemical and microbial biocatalytic reactions synergistically resulted in power generation and the high removal efficiencies of several heavy metals in wastewater, such as copper, hexavalent chromium, mercury, silver, thallium. The coupling system of MFCs and microbial electrolysis cells (MECs) successfully reduced cadmium and lead without external energy input. Moreover, the effects of pH and electrode materials on the MFCs in water were discussed. In addition, the remediation of heavy metal-contaminated soil by MFCs were summarized, noting that plant-MFC performed very well in the heavy metal removal.

Biostimulation of carbonate precipitation process in soil for copper immobilization.

The urease-based microbially induced carbonate precipitation (MICP) is known as effective remediation strategy in soil metals remediation; however, all related studies confined to bioaugmentation. In the present study, biostimulation process was adopted for the first time in accelerating MICP in copper (Cu) immobilization in soil. The abundance, composition, and diversity of the bacterial community after biostimulation were assessed with MiSeq Illumina sequencing analysis that confirmed number and types of ureolytic and calcifying bacteria grown significantly leading to MICP process, compared to untreated soil. The results demonstrated that biostimulation induced calcite precipitation in soil that immobilized Cu mainly in carbonated fraction of soil, while soluble-exchangeable fraction decreased from 45.54 mg kg-1 to 1.55 mg kg-1 Cu in soil. Scanning electron microscopy (SEM) cum energy-dispersive X-ray spectroscopy (EDX) evaluated structure and elemental composition in Cu immobilization after biostimulation. Fourier Transform-Infra Red (FTIR) spectroscopy depicted functional chemical groups involved in copper immobilization, while X-Ray Diffraction (XRD) identified main crystalline phases or biominerals formed during biostimulation in order to carryout Cu remediation from soil.

The characteristics and local-regional contributions of atmospheric black carbon over urban and suburban locations in Shanghai, China.

Black carbon (BC), produced from the incomplete combustion of carbonaceous fuels, has emerged as a major contributor to global climate change with adverse health effects. Based on one-year (2016.06.01-2017.06.30) equivalent black carbon (eBC) measurements, this study analyzed the characteristics of eBC concentrations and the local-regional contributions at an urban site (Pudong, PD) and a suburban site (Qingpu, QP) in Shanghai, China. The results showed that the annual average eBC concentrations were 1.17 ±â€¯0.61 µg m-3 and 2.09 ±â€¯0.97 µg m-3 at PD and QP, respectively. The high eBC concentrations occurred in winter and at weekends both for PD and QP. There were significant negative correlation coefficients between the daily eBC, the daily wind speed (WS) and the daily boundary layer height (BLH) at PD (rws: 0.45, rblh = -0.35, p < 0.01) and QP (rws: 0.49, rblh = -0.32, p < 0.01). And the relative higher eBC concentrations coincided with southerly, southwesterly and westerly winds although these winds had lower frequencies. This could be related to the agricultural fire in these directions during summer harvesttime. The significant partial correlation coefficients of eBC-CO (ru:0.37-0.64, rs:0.18-0.44, p < 0.01) and eBC-NO2 (ru:0.49-0.74, rs:0.38-0.75, p < 0.01) could suggest that eBC mainly come from vehicular exhaust emissions in Shanghai. Besides, the higher eBC/PM2.5 (5.29% ±â€¯1.94%) and eBC/CO(0.30% ±â€¯0.14%) at QP indicated the more combustion activities and diesel-powered vehicle emissions in suburban areas. The concentration weighted trajectory (CWT) analysis indicated that the surrounding areas at the junction of Shanghai, Jiangsu, and Zhejiang provinces seemed to be relatively the most important sources outside of Shanghai.