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The equilibrium geometry structures and light absorption properties of the dopamine (DA) and dopamine-o-quinone (DAQ) adsorbed on the graphene surface have been investigated using the ground state and linear-response time-dependent density functional theories. Two types of graphene systems were considered, a rectangular form of hexagonal lattice with optimized C-C bond length as the model system for graphene nanoparticles (GrNP) and a similar system but with fixed C-C bond length (1.42 Å) as the model system for graphene 2D sheet (GrS). The analysis of the vertical excitations showed that three types of electronic transitions are possible, namely, localized on graphene, localized on the DA or DAQ, and charge transfer (CT). In the case of the graphene-DA complex, the charge transfer excitations were characterized by the molecule-to-surface (MSCT) character, whereas the graphene-DAQ was characterized by the reverse, i.e. surface-to-molecule (SMCT). The difference between the two cases is given by the presence of an energetically low-lying unoccupied orbital (LUMO+1) that allows charge transfer from the surface to the molecule in the case of DAQ. However, it was also shown that the fingerprints of excited electronic states associated with the adsorbed molecules cannot be seen in the spectrum, as they are mostly suppressed by the characteristic spectral shape of graphene.
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The equilibrium and conical intersection geometries of the benzene dimer were computed in the framework of the conventional, linear-response time-dependent and spin-flipped time-dependent density functional theories (known as DFT, TDDFT and SF-TDDFT) as well as using the multiconfigurational complete active space self-consistent field (CASSCF) method considering the minimally augmented def2-TZVPP and the 6-31G(d,p) basis sets. It was found that the stacking distance between the benzene monomers decreases by about 0.5 Å in the first electronic excited state, due to the stronger intermolecular interaction energy, bringing the two monomers closer together. Intermolecular-type conical intersection (CI) geometries can be formed between the two benzene molecules, when (i) both monomer rings show planar deformation and (ii) weaker (approximately 1.6-1.8 Å long) C-C bonds are formed between the two monomers, with parallel and antiparallel orientation with respect to the monomer. These intermolecular-type CIs look energetically more favorable than dimeric CIs containing only one deformed monomer. The validity of the dimer-type CI geometries obtained by SF-TDDFT was confirmed by the CASSCF method. The nudged elastic band method used for finding the optimal relaxation path has confirmed both the accessibility of these intermolecular-type CIs and the possibility of the radiationless deactivation of the electronic excited states through these CI geometries. Although not as energetically favorable as the previous two CI geometries, there are other CI geometries characterized by the relative rotation of monomers at different angles around a vertical C-C axis.
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Benceno , Teoría Cuántica , Benceno/química , PolímerosRESUMEN
The influence of formic acid on water cluster aggregation has been investigated experimentally by mass spectrometry and tunable UV laser ionization applied to Na-doped clusters formed in the supersonic expansion of water vapors seeded with formic acid (FA) as well as theoretically using high level quantum chemistry methods. The mass spectra of Na-FA(H2 O)n clusters show an enlarging of mass distribution toward heavier clusters with respect to the Na-(H2 O)n clusters, suggesting similar mass distribution in neutral clusters and an influence of formic acid in water aggregation. Density functional theory and coupled-cluster type (DLPNO-CCSD(T)) calculations have been used to calculate structures and energetics of neutral and ionized Na-FA(H2 O)n as well as neutral FA(H2 O)n . Na-doped clusters are characterized by very stable geometries. The theoretical adiabatic ionization potential values match pretty well the measured appearance energies and the calculated first six electronic excited states show Rydberg-type characters, indicating possible autoionization contributions in the mass spectra. Finally, theoretical calculations on neutral FA(H2 O)n clusters show the possibility of similarly stable structures in small clusters containing up to n=4-5 water molecules, where FA interacts significantly with waters. This suggests that FA can compete with water molecules in the starting stage of the aggregation process, by forming stable nucleation seed.
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The equilibrium geometries of the ground and first electronic excited states as well as the radiation-less deactivation channels of catechol in its monomer and dimer configurations were investigated using the standard linear-response and the spin-flipped TDDFT, multireference CASSCF as well as the similarity transformed equation-of-motion coupled cluster built with the domain-based local pair natural orbitals (DLPNO-STEOM-CCSD) methods. For the monomer, it was found that there is a new conical intersection geometry that can explain why catechol exhibits different photochemical behavior. This deactivation pathway involves almost simultaneously, an excited state intramolecular proton transfer between the two O atoms and an O-H bond breaks at the proton that is not between the two O atoms. From an energy balance point of view, these geometries are not associated with high potential barriers, so radiation-less relaxation can be achieved through these geometries. For the cyclohexane solvent, the lowest CI geometry shows an energy gap of about 4 kcal mol-1 lower than that found for acetonitrile, making the relaxation even more easier. In the case of catechol dimer structures, several so-called dimer-type CI geometries were found where both monomers exhibit substantial geometric distortions together with the formation of a weaker C-C bond between the two catechol monomers. These CI geometries are energetically more favorable and, in the case of aggregation processes, more likely to decay the excited states of the catechol through these radiation-less deactivation channels than those found for the monomer.
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To understand the photochemical behaviour of the polydopamine polymer in detail, one would also need to know the behaviour of its building blocks. The electronic absorption, as well as the fluorescence emission and excitation spectra of the dopamine were experimentally and theoretically investigated considering time-resolved fluorescence spectroscopy and first-principles quantum theory methods. The shape of the experimental absorption spectra obtained for different dopamine species with standard, zwitterionic, protonated, and deprotonated geometries was interpreted by considering the advanced equation-of-motion coupled-cluster theory of DLPNO-STEOM. Dynamical properties such as fluorescence lifetimes or quantum yield were also experimentally investigated and compared with theoretically predicted transition rates based on Fermi's Golden Rule-like equation. The results show that the photochemical behaviour of dopamine is strongly dependent on the concentration of dopamine, whereas in the case of a high concentration, the zwitterionic form significantly affects the shape of the spectrum. On the other hand, the solvent pH is also a determining factor for the absorption, but especially for the fluorescence spectrum, where at lower pH (5.5), the protonated and, at higher pH (8.0), the deprotonated forms influence the shape of the spectra. Quantum yield measurements showed that, besides the radiative deactivation mechanism characterized by a relatively small QY value, non-radiative deactivation channels are very important in the relaxation process of the electronic excited states of different dopamine species.
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Dopamina , Rayos Ultravioleta , Teoría Cuántica , Solventes/química , Espectrometría de FluorescenciaRESUMEN
The structural stability, charge transfer effects and strength of the spin-orbit couplings in different Ni(ii)-ligand complexes have been studied at the DFT (B3LYP and CAM-B3LYP) and coupled cluster (DLPNO-CCSD(T)) levels of theory. Accordingly, two different, porphyrin- and diketo-pyrphyrin-based four-coordination macrocycles as planar ligands as well as pyridine (or pyrrole) and mesylate anion molecular groups as vertical ligands were considered in order to build metal-organic complexes with octahedral coordination configurations. For each molecular system, the identification of equilibrium geometries and the intersystem crossing (the minimum energy crossing) points between the potential energy surfaces of the singlet and triplet spin states is followed by computing the spin-orbit couplings between the two spin states. Structures, based on the diketo-pyrphyrin macrocycle as the planar ligand, show stronger six-coordination metal-organic complexes due to the extra electrostatic interaction between the positively charged central metal cation and the negatively charged vertical ligands. The results also show that the magnitude of the spin-orbit coupling is influenced by the atomic positions of deprotonations of the ligands, and implicitly the direction of the charge transfer between the ligand and the central metal ion.
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2α-Methyl-4,5α-dihydrotestosterone 17ß-propionate, known as drostanolone propionate or masteron, is a synthetic anabolic-androgenic steroid derived from dihydrotestosterone. The crystal structures of two polymorphs of drostanolone propionate have been determined by single crystal X-ray diffraction and both crystallizes in the monoclinic crystal system. One is belonging to the P21 space group, Z = 2, and has one molecule in the asymmetric unit while the second belongs to the I2 space group, Z = 4, and contains two molecules in the asymmetric unit. Another polymorph has been investigated by an X-ray powder diffraction method and solved by Parallel tempering/Monte Carlo technique and refined with the Rietveld method. This polymorph crystallizes in the orthorhombic P212121 space group, Z = 4 having one molecule in the asymmetric unit. The structural configuration analysis shows that the A, B, and C steroid rings exist as chair geometry, while ring D adopts a C13 distorted envelope configuration in all structures. For all polymorphs, the lattice energy has been computed by CLP (Coulomb-London-Pauli), and tight-binding density functional theory methods. Local electron correlation methods were used to estimate the role of electron correlation in the magnitude of the dimer energies. The nature of the intermolecular interactions has been analyzed by the SAPT0 energy decomposition methods as well as by Hirshfeld surfaces.
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Androstanoles/química , Cristalización , Enlace de Hidrógeno , Modelos Moleculares , Esteroides/química , Termodinámica , Difracción de Rayos XRESUMEN
The high-yield synthesis and the structural investigation of a new cryptand with C3 symmetry, exhibiting 2,4,6-triphenyl-1,3,5-triazine central units and pyridine-based bridges, are reported. The structure of the compound was investigated by single crystal X-ray diffractometry, NMR (nuclear magnetic resonance), HRMS (high resolution mass spectrometry) measurements, and theoretical calculations. The study of supramolecular behavior in solid state revealed the association of cryptand molecules by C-H---π and π---π contacts. Moreover, theoretical calculations indicated the high binding affinity of the cryptand for various organic molecules as guests.
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Éteres Cíclicos/química , Éteres Cíclicos/síntesis química , Modelos Moleculares , Piridinas/química , Bases de Schiff/química , Bases de Schiff/síntesis química , Cristalografía por Rayos X , Espectroscopía de Resonancia Magnética , Estructura MolecularRESUMEN
The structural stability and photoabsorption properties of Ni(II)-based metal-organic complexes with octahedral coordination having different planar ligand ring structures were investigated employing density functional theory (DFT) and its time-dependent extension (TD-DFT) considering the M06 exchange-correlation functional and the Def2-TZVP basis set. The results showed that the molecular composition of different planar cyclic ligand structures had significant influences on the structural stability and photoabsorption properties of metal-organic complexes. Only those planar ligands that contained aromatic rings met the basic criteria (thermal stability, structural reversibility, and appropriate excitation frequency domain) for light-induced excited spin state trapping, but their spin transition efficiencies were very different. While, in all three aromatic cases, the singlet electronic excitations induced charge distribution that could help in the singlet-to-triplet spin transition, and triplet excitations, which could assist in the backward (triplet-to-singlet) spin transition, was found only for one complex.
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Complejos de Coordinación/síntesis química , Compuestos Macrocíclicos/síntesis química , Níquel/química , Simulación por Computador , Complejos de Coordinación/química , Teoría Funcional de la Densidad , Ligandos , Compuestos Macrocíclicos/química , Modelos Moleculares , Estructura Molecular , Procesos Fotoquímicos , Marcadores de SpinRESUMEN
The intermolecular interaction in difluoromethane, dichloromethane, dibromomethane, and diiodomethane dimers has been investigated using high level quantum chemical methods. The potential energy curve of intermolecular interaction along the Câ¯C bond distance obtained using the coupled-cluster theory with singles, doubles, and perturbative triples excitations CCSD(T) were compared with values given by the same method, but applying the local (LCCSD(T)) and the explicitly correlated (CCSD(T)-F12) approximations. The accuracy of other theoretical methods-Hartree-Fock (HF), second order Møller-Plesset perturbation (MP2), and dispersion corrected DFT theory-were also presented. In the case of MP2 level, the canonical and the local-correlation cases combined with the density-fitting technique (DF-LMP2)theories were considered, while for the dispersion-corrected DFT, the empirically-corrected BLYP-D and the M06-2Xexchange-correlation functionals were applied. In all cases, the aug-cc-pVTZ basis set was used, and the results were corrected for the basis set superposition error (BSSE) using the counterpoise method. For each molecular system, several dimer geometries were found, and their mutual orientations were compared with the nearest neighbor orientations obtained in recent neutron scattering studies. The nature of the intermolecular interaction energy was discussed.
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Compuestos Inorgánicos/análisis , Compuestos Inorgánicos/química , Dimerización , Hidrocarburos Bromados/análisis , Hidrocarburos Bromados/química , Hidrocarburos Clorados/análisis , Hidrocarburos Clorados/química , Hidrocarburos Fluorados/análisis , Hidrocarburos Fluorados/química , Hidrocarburos Yodados/análisis , Hidrocarburos Yodados/química , Modelos Químicos , Modelos Moleculares , Teoría CuánticaRESUMEN
The processes involved in the photoionization of sodium-doped clusters are complex, not fully understood for many systems and still strongly debated, especially because of the discrepancy between experimental results and predicted cluster structures. We have performed a study on sodium doped formic acid clusters based on UV photoionization spectroscopy and DFT/TDDFT calculations. Apart from the monomer, all the predicted structures show vertical ionization potential values higher than those obtained by the photoionization measurements. We have calculated the absorption spectra and found many Rydberg-like states near the adiabatic ionization potentials and, crucially, in the UV range where the clusters appearance energies fall. This finding supports the hypothesis of adiabatic contributions in the measured ionization potentials for these clusters.
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Background: 4-(n-Octyloxy)aniline is a known component in the elaboration of organic materials with mesogenic properties such as N-substituted Schiff bases, perylene bisimide assemblies with a number of 2-amino-4,6-bis[4-(n-octyloxy)phenylamino]-s-triazines, amphiphilic azobenzene-containing linear-dendritic block copolymers and G-0 monomeric or dimeric dendritic liquid crystals with photochromic azobenzene mesogens. The present ab initio study explores a previously unknown use of 4-(n-octyloxy)aniline in the synthesis, structure and supramolecular behaviour of new dendritic melamines. Results: Starting from 4-(n-octyloxy)aniline, seven G-2 melamine-based dendrimers were obtained in 29-79% overall yields. Their iterative convergent- and chemoselective synthesis consisted of SN2-Ar aminations of cyanuric chloride and final triple N-acylations and Williamson etherifications (â G-2 covalent trimers) or stoichiometric carboxyl/amino 1:3 neutralisations (â G-2 ionic trimers). These transformations connected G-1 chloro- and amino-termini dendrons to m-trivalent cores (triazin-2,4,6-triyl and benzene-1,3,5-triyl units) or tripodands (central building blocks), such as N-substituted melamines with 4-hydroxyphenyl or phenyl-4-oxyalkanoic motifs. Owing to the diversity of cores and central building blocks, the structural assortment of the dendritic series was disclosed by solvation effects (affecting reactivity), rotational stereodynamism and self-organisation phenomena (determining a vaulted and/or propeller macromolecular shape in solution). DFT calculations (in solution), (VT) NMR and IR (KBr) spectroscopy supported these assignments. TEM analysis revealed the ability of the title compounds towards self-assembling into homogeneously packed spherical nano-aggregates. Conclusions: The (non)covalent synthesis and step-by-step structural elucidation of novel G-2 melamine dendrimers based on 4-(n-octyloxy)aniline are reported. Our study demonstrates the crucial influence of the nature (covalent vs ionic) of the dendritic construction in tandem with that of its central building blocks on the aptitude of dendrimers to self-organise in solution and to self-assembly in the solid state.
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The aromatic nucleophilic substitution reaction based synthesis of a three-armed cryptand displaying 2,4,6-triphenyl-1,3,5-triazine units as caps and pyridine rings in the bridges, along with NMR, MS and molecular modelling-based structural analysis of this compound are reported. Appropriate NMR and molecular modelling investigations proved the formation of 1:1 host-guest assemblies between the investigated cryptand and some polynuclear aromatic hydrocarbons or their derivatives.
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The influence of carboxylic acids on water nucleation in the gas phase has been explored in the supersonic expansion of water vapour mixed with acetic acid (AcA) at various concentrations. The sodium-doping method has been used to detect clusters produced in supersonic expansions by using UV photoionisation. The mass spectra obtained at lower acid concentrations show well-detected Na(+) -AcA(H2O)n and Na(+)-AcA2 (H2O)n clusters up to 200 Da and, in the best cooling expansions, emerging Na(+)-AcAm (H2O)n signals at higher masses and unresolved signals that extend beyond m/e values >1000 Da. These signals, which increase with increasing acid content in water vapour, are an indication that the cluster growth taking place arises from mixed water-acid clusters. Theoretical calculations show that small acid-water clusters are stable and their formation is even thermodynamically favoured with respect to pure water clusters, especially at lower temperatures. These findings suggest that acetic acid may play a significant role as a pre-nucleation embryo in the formation of aerosols in wet environments.
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The fully propagated real time-dependent density functional theory method has been applied to study the laser-molecule interaction in 5- and 6-benzyluracil (5BU and 6BU). The molecular geometry optimization and the time-dependent electronic dynamics propagation were carried out using the M11-L local meta-NGA (nonseparable gradient approximations) exchange-correlation functional together with the def2-TZVP basis set. Different laser field parameters like direction, strength, and wavelength have been varied in order to estimate the conditions for an efficient excitation of the molecules. The results show that the two molecules respond differently to the applied laser field and therefore specific laser field parameters have to be chosen for each of them in order to get efficient and selective excitation behavior. It was also found that from the molecular excitation point of view not only the magnitude of the transition dipoles between the involved orbitals but also their orientation with respect to the laser field is important. On the other hand, it was shown that the molecular excitation is a very complex overlapping of different one-electron orbital depopulation-population processes of the occupied and virtual orbitals.
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Modelos Moleculares , Uracilo/análogos & derivados , Electrones , Rayos Láser , Teoría Cuántica , Termodinámica , Uracilo/químicaRESUMEN
BACKGROUND: Louse flies (Diptera, Hippoboscidae) are important blood-sucking parasites of birds and mammals with a worldwide distribution. The aim of our study was to collect louse flies from birds across multiple sites in Hungary and evaluate the effects of avian traits on louse fly-host relationships. METHODS: Between 2015 and 2022, 237 louse flies were collected from birds at multiple locations in Hungary. The louse flies were identified to species level by morphological and molecular methods. Louse fly species and their seasonal dynamics were analyzed. RESULTS: Six louse fly species were identified: Ornithomya avicularia, Ornithomya fringillina, Ornithomya biloba, Ornithomya chloropus, Ornithoica turdi and Ornithoctona laticornis. Results of statistical analyses indicated that habitat, migration habits and the feeding places of birds have significant effects on their possible role as hosts of O. avicularia, O. fringillina and O. turdi. Analysis of the temporal distribution of avian louse flies showed different seasonal patterns according to species. Phylogenetic analyses highlighted that O. turdi clustered separately from other members of the subfamily Ornithomyinae which thus did not form a monophyletic group. CONCLUSIONS: This study presents one of the longest continuous collections of ornithophilic louse fly species in Europe so far. Avian traits were shown to influence louse-fly infestation. To our best knowledge, this is the first report on O. laticornis in Europe. The ability of this African louse fly species to survive in Europe, as demonstrated in the present study, may be an indication of its future establishment. Our findings, in accordance with previous reports, also indicated that the subfamily Ornithomyinae should be taxonomically revised.
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Enfermedades de las Aves , Aves , Dípteros , Filogenia , Estaciones del Año , Animales , Hungría , Aves/parasitología , Dípteros/clasificación , Dípteros/fisiología , Enfermedades de las Aves/parasitología , Enfermedades de las Aves/epidemiología , Interacciones Huésped-Parásitos , Ecosistema , Masculino , FemeninoRESUMEN
Polydopamine (PDA) formed by the oxidation of dopamine is an important polymer, in particular, for coating various surfaces. It is composed of dihydroxyindole, indoledione, and dopamine units, which are assumed to be covalently linked. Although PDA has been applied in a manifold way, its structure is still under discussion. Similarities have been observed in melanins/eumelanins as naturally occurring, deeply colored polymer pigments derived from L-DOPA. Recently, an alternative structure was proposed for PDA wherein dihydroxyindoline, indolinedione, and eventually dopamine units are not covalently linked to each other but are held together by hydrogen bonding between oxygen atoms or π stacking. In this study, we show that this structural proposal is very unlikely to occur taking into account unambiguous results obtained by different analytical methods, among them (13)C CPPI MAS NMR (cross-polarization polarization-inversion magic angle spinning NMR), (1)H MAS NMR (magic angle spinning NMR), and ES-HRMS (electrospray ionization high-resolution mass spectrometry) for the first time in addition to XPS (X-ray photoelectron spectroscopy) and FTIR spectroscopy. The results give rise to a verified structural assignment of PDA wherein dihydroxyindole and indoledione units with different degrees of (un)saturation are covalently linked by C-C bonds between their benzene rings. Furthermore, proof of open-chain (dopamine) monomer units in PDA is provided. Advanced DFT calculations imply the arrangements of several PDA chains preferably by quinone-hydroquinone-type interactions in a parallel or antiparallel manner. From all of these results, a number of hypotheses published before could be experimentally supported or were found to be contradictory, thus leading to a better understanding of the PDA structure.
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Indoles/química , Polímeros/química , Espectroscopía de Resonancia Magnética , Espectroscopía de FotoelectronesRESUMEN
A numerical study is reported concerning the first and second singlet excited-states of 5-benzyluracil using the multireference self-consistent field (state-averaged CASSCF) method. The vertical excitation energies of low-lying excited-states were characterized using the SA-CASSCF method, as well as using higher-level methods, such as CASPT2, MRCI and EOM-CCSD. The local minima and conical intersections found on the potential energy surfaces (PESs) were characterized in terms of molecular geometry and natural population analysis. Different relaxation pathways on the PESs are identified and discussed by comparing with the similar pathways found for the individual monomers of uracil and benzene. The molecule can be thought of as a model system for the study of crosslink reaction between DNA and proteins induced by UV light.
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Benceno/química , Uracilo/análogos & derivados , Uracilo/química , Modelos Moleculares , Teoría Cuántica , TermodinámicaRESUMEN
The increasing pollution of surface and groundwater bodies by pharmaceuticals is a general environmental problem requiring routine monitoring. Conventional analytical techniques used to quantify traces of pharmaceuticals are relatively expensive and generally demand long analysis times, associated with difficulties in performing field analyses. Propranolol, a widely used ß-blocker, is representative of an emerging class of pharmaceutical pollutants with a noticeable presence in the aquatic environment. In this context, we focused on developing an innovative, highly accessible analytical platform based on self-assembled metal colloidal nanoparticle films for the fast and sensitive detection of propranolol based on Surface Enhanced Raman Spectroscopy (SERS). The ideal nature of the metal used as the active SERS substrate was investigated by comparing silver and gold self-assembled colloidal nanoparticle films, and the improved enhancement observed on the gold substrate was discussed and supported by Density Functional Theory calculations, optical spectra analyses, and Finite-Difference Time-Domain simulations. Next, direct detection of propranolol at low concentrations was demonstrated, reaching the ppb regime. Finally, we showed that the self-assembled gold nanoparticle films could be successfully used as working electrodes in electrochemical-SERS analyses, opening the possibility of implementing them in a wide array of analytical applications and fundamental studies. This study reports for the first time a direct comparison between gold and silver nanoparticle films and, thus, contributes to a more rational design of nanoparticle-based SERS substrates for sensing applications.
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Oro , Nanopartículas del Metal , Oro/química , Plata/química , Nanopartículas del Metal/química , Propranolol , Espectrometría Raman/métodos , Preparaciones FarmacéuticasRESUMEN
In this paper the procedure for the preparation of inclusion compounds of bioactive substance 2-[(2-aminoetoxy)-methyl]-4-(2-chlorophenyl)-1,4-dihydro-6-methyl-3,5-pyridine dicarboxylic acid 3-ethyl-5-methyl esterbenzene sulfonate, called amlodipine besylate with ß-cyclodextrin (ß-CD) and their structural characterization was described. Molecular inclusion compound of amlodipine besylate is obtained by different preparation method: kneading, co-precipitation and freeze-drying. The so obtained compounds were investigated by FTIR spectroscopy, X-ray diffraction method and differential scanning calorimetric measurements (DSC) to evidence their formation. Molecular modeling (using DFT theoretical computations) shows the spatial architecture of the inclusion compound in good agreement with FTIR experimental data: the drug is included with dihydropyridine dicarboxylate part inside ß-cyclodextrin cavity. The inclusion of amlodipine besylate in ß-cyclodextrin increases the stability and bioavailability of the drug.