Fast atom bombardment tandem mass spectrometry employing ion-molecule reactions for the differentiation of phospholipid classes.

Fast atom bombardment tandem mass spectrometry, employing ion-molecule reactions with ethyl vinyl ether in a triple-quadrupole mass spectrometer, is used to differentiate classes of phospholipids. The phospholipids are desorbed and ionized by fast atom bombardment, mass-selected by the first quadrupole, and reacted with ethyl vinyl ether in the second quadrupole; the resulting product ions are analyzed by the third quadrupole. The protonated molecules and reaction product ions observed permit the differentiation of various phospholipid classes. The pattern of addition reaction products formed is shown to depend solely on the functionality of the lipid polar head group and not on the fatty acyl constituents. Neutral gain scans that are specific for each phospholipid class are performed. Ion dissociation products are observed in the same scan as the ion reaction products to provide data on the fatty acyl composition and position on the glycerophosphate COre along with the phospholipid class. Although this method is less sensitive than neutral loss scanning for most phospholipid classes, it can (1) identify phospholipids that do not readily lose their head group as a neutral fragment and (2) detect phospholipids in mixtures containing species that give interfering neutral losses.

Mechanistic study of hydrogen/deuterium exchange between [M - 1](-) ions of chlorinated benzenes and D 2O or ND 3.

Low-energy collisions between [M - 1](-) ions derived from the three isomers of dichlorobenzene and deuterated water and ammonia are found to produce distinctive hydrogen/ deuterium (H/D) exchange reaction product patterns. The predominant products observed for p-, m-, and o-dichlorobenzene are 1, 2, and 3 sequential deuterium exchanges, respectively. The reactivity is substantially higher for D2O than ND3 We postulate a mechanism that involves the formation of a five-membered-ring intermediate. The intermediate is thought to be initiated by the attack of ND3 or D2O at the localized negative charge site on the aromatic ring. A successful exchange is followed by the relocation of the charge site to the adjacent carbon. Ion products with higher degrees of deuterium substitution than the expected predominant products of their corresponding isomers are believed to be the results of isomerization of the reactant ions occurring in the ion source. The proposed mechanism fuily explains the observed product spectra derived from al1 the isomers of chlorinated benzenes. The trends for the formation of various H/D exchange products represented by the sweated product-time plots based on the proposed mechanism compare well with the similar trends obtained from the experimental product-pressure plots. The reaction is useful for the mass spectrometric differentiation of chlorobenzene isomers.

A mathematical study of sample modulation at a membrane inlet mass spectrometer-Potential application in analysis of mixtures.

An ANSI C program that simulates the diffusion profiles of sample modulation at a membrane inlet system has been developed to study the characteristics of modulated diffusion profiles. The program produces concentration profiles within the membrane and flux values at the exit side of the membrane as a function of time. Sample concentration on the inlet side can be switched between zero and an arbitrary value with a square or asymmetric cycle. Achievement of steady-state diffusion between alternations is not required. With this computer simulation, the flux profiles of analytes through a membrane inlet have been studied as a function of diffusion coefficient, modulation frequency, and concentration. The amplitude, shape, and time lag or phase angle of the flux profile are shown to be related directly to analyte concentration and diffusivity. A method that involves a set of linear equations is proposed to resolve mixtures of diffusing analytes based on differences in the time dependence of their flux profiles.

Simple cylindrical ion mirror with three elements.

A new cylindrical ion mirror has been designed to create an electric field that is non-linear or curved along the flight path axis for general-purpose time-of-flight mass spectrometers. The inclusion of one or two grids is found to improve the radial field homogeneity especially around the aperture. Only three cylindrical electrodes are used in the design. Changing the electrode dimensions and voltages affects the electric field distribution. Once the electrode dimensions are fixed, there are only two adjustable parameters for achieving optimum nonlinear electric field shape. Resolving powers of 7,000 and 16,100 have been achieved with kinetic energy variations of 34 and 10.5%, respectively. Simulations show that the electric field homogeneity in the radial direction enables the use of ion beam diameters up to 15 mm with only modest loss of resolving power. Increasing the mirror diameter could further increase the practical ion beam diameter. This article details the electric field distribution within the cylindrical mirror in both axial and radial directions. The voltages of the middle and rear electrodes affect the resolving power and the kinetic energy range over which focus can be achieved. The predicted arrival time spread for a single m/z value is narrower than that caused by the turn-around time of ions in a gas-phase ion source. In this case, the broad energy range over which good focus is achieved enables the use of higher extraction fields for turn-around time reduction.

Simple geometry gridless ion mirror.

A gridless variation of the cylindrical ion mirror has been designed to create an electric field that is nonlinear in the axial direction and nearly homogeneous in the radial direction. The designs may include one or two chambers that consist of truncated cones. This new design concept yields ion mirrors with improved energy focusing over conventional single-field and multiple-field mirrors. Conventionally, ion mirrors with nonlinear field gradient use multiple diaphragm electrodes to which distinct voltages are applied. In this work, optimized nonlinear field distributions are achieved through shaping only two or three electrodes and applying only one or two voltages on the electrodes. The designs presented here offer high resolving power and low ion dispersion. SIMION simulations of performance from the ion source to the detector demonstrate resolving powers of 11,000 and 1,750 for ions with kinetic energy variations of 7.5% and 23.6%, respectively.

193-nm Photodissociation of ions from saturated and unsaturated aliphatic molecules.

To determine the analytical utility of photodissociation as a general fragmentation technique for tandem mass spectrometry of organic ions, the ability to fragment those ions considered least likely to absorb photons efficiently was investigated. To this end, the ability to photodissociate ions of aliphatic compounds by using 193-nm photons has been studied. Three fragment ions, the C4H 9 (+) ion from n-hexane, the C4H 7 (+) ion from 2-hexene, and C4H 5 (+) from 2-hexyne, have been photodissociated. The fragmentation efficiencies for all three ions studied were between 25 and 45%. The photofragment ion spectrum for each precursor ion studied is made up of characteristic fragments. These spectra demonstrate the ability to photodissociate aliphatic ions that originate from both saturated and unsaturated molecules. This provides substantial hope that virtually all organic ions will be able to be photodissociated by using 193-nm photons.

Method for the design of broad energy range focusing reflectrons.

A novel method for the design of reflections capable of focusing large kinetic energy ranges is presented. The design method itself is a numerical approach that provides a geometrically flexible alternative to traditional analytical design solutions. This design method has been used to produce a reflectron that provides unit mass resolution for product spectra in a tandem reflectron time-of-flight (TOF) mass spectrometer despite a kinetic energy range of 1950-2700 eV. In this application, the systematic progression of reflectron design results in a practical, nonlinear field reflectron with the use of only two grids. Design improvements are proposed for more flexible systems, although geometric constraints in the current instrument limit their experimental evaluation.

A segmented ring, cylindrical ion trap source for time-of-flight mass spectrometry.

An ion trap source has been designed for use with time-of-flight (TOF) mass analysis. Two thin diaphragms make up a segmented ring electrode; the end cap electrodes are planar wire mesh. The potential field produced by the rf voltage applied between the ring and end cap electrodes resembles that of the cylindrical ion trap. The trapped ion population for ions created by electron impact exhibits linear growth against a first-order loss that has a time constant of about 50 µs; no ion loss occurs when the electron beam is off. The observed value of q z at low-mass cutoff for rf ion storage is -0.84. Pulsed extraction of all ions is accomplished by switching the trap electrodes from rf to voltages required to provide a linear dc extraction field. The TOF flight path includes a wide energy range reflectron. Better than unit mass resolution is achieved through m/z 500 without collisional ion cooling. With an extraction rate of 1 kHz and a recording rate of 4 spectra per second, a linear working curve is obtained between 36 pg and 18 ng of chlorobenzene delivered chromatographically. The system has demonstrated the potential to achieve a very high sample utilization efficiency at high spectral generation rates.

Effects of salt concentration on analyte response using electrospray ionization mass spectrometry.

The effect of salt concentration on analyte response using electrospray ionization mass spectrometry (ESI-MS) was measured and compared to that predicted by Enke's equilibrium partitioning model. The model predicts that analyte response will be proportional to concentration and that the response factor will decrease with increasing electrolyte concentration. The measured analyte response is proportional to concentration over four orders of magnitude when the electrolyte concentration is below 10(-3) M, as the model predicts. The concentration of excess charge ([Q]) generated by the ESI process increases significantly at 10(-3) M ionic concentration, but the response factor decreases at this concentration. Changes in shape of the spray that cause a loss of ion transmission efficiency may be the basis for the decrease in response. An increase in the analyte response factor with increasing electrolyte concentration is observed for electrolyte concentrations below 10(-3) M. An explanation for this based on the electrical double layer is proposed.

High Efficiency Photo-Induced Dissociation of Precursor Ions in a Tandem Time-of-Flight Mass Spectrometer.

High efficiency photo-induced dissociation (PID) has been demonstrated in a tandem time-of-flight mass spectrometer. This instrument focuses isomass ion packets to temporal and spatial dimensions similar to those of the focused laser pulses from a high power excimer laser. This high density overlap of photons and ions yields highly efficient fragmentation and also provides high resolution selection of specific precursor ion mass-to-charge ratio values. Using 193 nm photon excitation of the molecular ion of bromobenzene (m/z = 1561, fragmentation, collection, and PID efficiencies af 79%, 132%, and 104%, respectively, were obtained. Characteristic fragmentations of toluene, nitrobenzene, acetophenone, triethylamine, N,N-diethylformamide, N-methylacetamide, and cyclohexene have also been demonstrated.

Beam deflection for temporal encoding in time-of-flight mass spectrometry.

The pulsed ion sources used in conventional time-of-flight mass spectrometry (TOFMS) generally do not provide adequate resolving power across the mass range required for applications such as gas chromatography combined with mass spectrometry (GC/MS). Theoretical and experimental aspects of beam deflection techniques, which provide time encoding for TOFJMS with continuous ions sources, are explored here. In this approach, ion source conditions do not affect resolving power, allowing for a greater variety of ionization modes to be used. Theoretical predictions for the resolving power attainable with beam deflection, which are satisfactory for GC/MS applications, agree well with experimentally determined values. The combination of GC-beam deflection-TOFMS with time-array detection is evaluated, and the capabilities of this system are compared to those of scanning mass spectrometers.

Generation of substructure identification rules using feature-combinations from tandem mass spectra.

Software to interpret tandem mass spectra, entitled Method for Analyzing Patterns in Spectra (MAPS), has been developed to provide substructure information for an automated compound identification system, This software consists of several program modules which manipulate databases of tandem mass spectra and substructure information, generate substructure identification rules, and apply these rules to the tandem mass spectra of unknown compounds to identify components of their structure. The MAPS rule generation program has been modified to generate rules based on specific combinations of spectral features that occur concertedly. False positives are drastically reduced by searching for "feature-combinations" that have 100% uniqueness with respect to a reference database of compounds. Recall is increased by the determination of multiple feature-combinations indicative of the presence of a given substructure. Strategies were developed in the algorithm for the discovery of feature-combinations that avoid the computation "explosion" that occurs when working with a large number of spectral features. The rules developed have the form: "IF feature-eombination a (FC a) or FC b,..., or FC x, THEN substructure SSn is present."

Evaluation of automatically generated substructure identification rules from tandem mass spectra.

Substructure identification rules for phenothiazine and barbiturate substructures were generated by using a new version of the Method for Analyzing Patterns in Spectra (MAPS) software. This software uses tandem mass spectra and known substructure content of reference compounds to provide "feature-combination" rules. A feature-combination is a series of tandem mass spectral features which are completely unique to compounds containing a specified substructure. The current reference databases contain over 11,000 daughter spectra of 100 compounds acquired at two different collision gas pressures (i.e., single- and multiple-collision conditions). The results of rule evaluation procedures are presented and include a comparison of the spectral features developed in rule generation to those identified in documented fragmentation pathways of the indicated substructure. Two potential sources of error due to spectral feature and substructure "cross-correlation" were identified. If errors occur, they can be detected by calculating cross-correlation coefficients and edited from the rules. A beneficial cross-correlation involving feature-combinations was also discovered. The rules obtained by using single- and multiple-collision data were further evaluated by applying them to tandem mass spectra of 20 test compounds (compounds not in the reference database). The results of these evaluations give a good indication of the utility of the rules for use in an automated structure elucidation system for tandem mass spectrometry data.

Importance of gas-phase proton affinities in determining the electrospray ionization response for analytes and solvents.

The effect of gas-phase proton transfer reactions on the mass spectral response of solvents and analytes with known gas-phase proton affinities was evaluated. Methanol, ethanol, propanol and water mixtures were employed to probe the effect of gas-phase proton transfer reactions on the abundance of protonated solvent ions. Ion-molecule reactions were carried out either in an atmospheric pressure electrospray ionization source or in the central quadrupole of a triple-quadrupole mass spectrometer. The introduction of solvent vapor with higher gas-phase proton affinity than the solvent being electrosprayed caused protons to transfer to the gas-phase solvent molecules. In mixed solvents, protonated solvent clusters of the solvent with higher gas-phase proton affinity dominated the resulting mass spectra. The effect of solvent gas-phase proton affinity on analyte response was also investigated, and the analyte response was suppressed or eliminated in solvents with gas-phase proton affinities higher than that of the analyte.

Optimization of automatically generated rules for predicting the presence and absence of substructures from MS and MS/MS data.

A pattern-recognition/artificial-intelligence program, referred to as MAPS (Method for Analyzing Patterns in Spectra), was recently developed to identify the relationships that exist between substructures and the characteristic features they produce in the spectra from mass spectrometry (MS) and successive mass spectrometry (MS/MS). MAPS has been extended to utilize these relationships to formulate exclusion rules as well as inclusion rules, so that the absence of recognized substructures can be predicted as well as their presence. The potential usefulness of each MS and MS/MS spectral feature in such rule formulation is characterized by correlation and uniqueness factors. The correlation factor expresses the degree of correlation between a feature and a specific substructure; the uniqueness factor expresses the uniqueness of a feature with respect to that substructure. Features with high correlation factors are most use for predicting the absence of substructures, whereas features with high uniqueness factors are most useful for predicting their presence. Feature intensity-data have been found to improve the inclusion-rule performance and degrade the exclusion-rule performance. Criteria for optimizing the predictive abilities of both rule types are discussed.

A predictive model for matrix and analyte effects in electrospray ionization of singly-charged ionic analytes.

In electrospray ionization (ESI), droplets with a surface excess charge are created. The rate of production of surface excess charge is a constant and is equal to the rate of ion production. The ions appearing in the mass spectrum are postulated to be those that formed the surface excess charge at the time of droplet formation (or their collision products). An equilibrium model based on competition among the ions in the solution for the limited number of excess charge sites has been developed. This model accurately predicts the response curves of singly-charged ionic analytes as a function of the concentration of electrolyte and other analytes and provides an explanation for the selective effectiveness of ESI. At low concentrations of total analyte (micromolar and less), the response curves are linear, indifferent to the presence of other low concentration analytes, and suppressed by electrolyte concentrations in excess of the minimum required. At higher analyte concentrations, the response becomes independent of analyte concentration but highly affected by the presence of other analytes.

Direct determination of phospholipid structures in microorganisms by fast atom bombardment triple quadrupole mass spectrometry.

When phospholipids ionized by fast atom bombardment undergo collisionally induced dissociation (CID), they cleave at specific bonds between the functional groups contained on the lipid. These cleavages are common to all classes of phospholipids. By taking advantage of this fact, a general scheme has been developed that uses a triple-quadrupole mass spectrometer to rapidly characterize the phospholipid content and structures present in crude lipid extracts. This scheme is based on fast atom bombardment ionization of a crude lipid extract and on the combination of positive-ion neutral-loss and parent scans and negative-ion daughter scans. Neutral-loss and parent scans provide independent diagnostic mass spectra for each of many specific phospholipid classes, while daughter scans provide the emperical formulas and positions of the fatty acyl constituents on each phospholipid. An automated tandem mass spectrometry (MS/MS) instrument can perform an extensive phospholipid screening on a single sample. A useful mass profile of the phosphatidylethanolamine species present in a 1-pg sample of mixed phospholipids (equivalent to ten Escherichia coli cells) has been obtained. The spectra are reproducible and proportional to concentration over at least the five-logarithm range of cell concentrations studied. A rapid extraction procedure combined with the automated instrument control program produces profiles of the phospholipid classes, along with fatty acyl empirical formulas and position information, on selected phospholipid species, in a few minutes, from a single sample.

Electrical equivalence of electrospray ionization with conducting and nonconducting needles.

An electrical equivalent circuit is derived for the electrospray process. It is a series circuit which consists of the power supply, the electrochemical contact to the solution, the solution resistance (R(s)), a constant-current regulator which represents the processes of charge separation and charge transport in the gap between the spray needle aperture and the counter electrode, and charge neutralization at the counter electrode. A current i, established by the constant-current regulator flows throughout the entire circuit. Current-voltage curves are developed for each element in the circuit. From these it is shown that in the case where R(s) is negligible (the power supply is connected directly to a conducting needle) the shape of the current-voltage curve is dictated by the constant-current regulator established by the charge separation process, the gap, and the counter electrode. The solution resistance may be significant if a nonconducting needle is used so that the electrochemical contact to the solution is remote from the tip. Experiments with a nonconducting spray needle quantify the effect of the solution resistance on the current-voltage curve. Subtracting the iRs voltage from Vapp (power supply voltage) yields the current-voltage curve for the constant-current regulator. When iRs drop is a significant fraction of Vapp, the current-voltage curve of the constant-current regulator is changed substantially from the case when the solution resistance is negligible.

Practical implications of some recent studies in electrospray ionization fundamentals.

In accomplishing successful electrospray ionization analyses, it is imperative to have an understanding of the effects of variables such as analyte structure, instrumental parameters, and solution composition. Here, we review some fundamental studies of the ESI process that are relevant to these issues. We discuss how analyte chargeability and surface activity are related to ESI response, and how accessible parameters such as nonpolar surface area and reversed phase HPLC retention time can be used to predict relative ESI response. Also presented is a description of how derivitizing agents can be used to maximize or enable ESI response by improving the chargeability or hydrophobicity of ESI analytes. Limiting factors in the ESI calibration curve are discussed. At high concentrations, these factors include droplet surface area and excess charge concentration, whereas at low concentrations ion transmission becomes an issue, and chemical interference can also be limiting. Stable and reproducible non-pneumatic ESI operation depends on the ability to balance a number of parameters, including applied voltage and solution surface tension, flow rate, and conductivity. We discuss how changing these parameters can shift the mode of ESI operation from stable to unstable, and how current-voltage curves can be used to characterize the mode of ESI operation. Finally, the characteristics of the ideal ESI solvent, including surface tension and conductivity requirements, are discussed. Analysis in the positive ion mode can be accomplished with acidified methanol/water solutions, but negative ion mode analysis necessitates special constituents that suppress corona discharge and facilitate the production of stable negative ions.