RESUMEN
Closure of bronchopleural fistula remains a difficult challenge for clinicians. Although several therapeutic approaches have been proposed, the clinical results are commonly unsatisfactory. Previous reports have indicated that autologous mesenchymal stem cells (MSCs) are useful for aiding treatment of bronchopleural fistula. We report here the use of umbilical cord MSCs to effect the successful closure of a bronchopleural fistula (5 mm) in a 33-year-old woman 6 months after a lobectomy. A review of the relevant literature is included. The use of MSCs may be a promising therapeutic method for the closure of bronchopleural fistula. Randomized controlled trials with larger samples are required.
Asunto(s)
Fístula Bronquial/terapia , Trasplante de Células Madre Mesenquimatosas/métodos , Células Madre Mesenquimatosas/citología , Enfermedades Pleurales/terapia , Neumonectomía/efectos adversos , Adulto , Fístula Bronquial/diagnóstico , Broncoscopía , Femenino , Fístula/diagnóstico , Fístula/terapia , Humanos , Inyecciones , Enfermedades Pleurales/diagnóstico , Complicaciones Posoperatorias/terapia , Tomografía Computarizada por Rayos XRESUMEN
Blood constituent examination is an important means of health diagnosis. For blood constituent examination, we usually adopt the method of drawing blood, which bring pain and the risk of cross infection to the patient. Near infrared spectrum spectroscopy (NIRS) is a research hotspot in noninvasive blood constituent examination. The spectral data acquisition system of existing instruments is using a Single Chip Microcomputer (SCM) as its microcontroller. The spectral data acquisition system cannot realize the high speed multi-channel acquisition and storage of large amounts of data because of the SCM itself has certain deficiency. So a high speed multi-channel spectral data acquisition system based on Field Programmable Gate Array (FPGA) was designed in this paper in order to realize the system of high speed, multi-channel and high signal-to-noise ratio (SNR) in the area of noninvasive blood constituent examination by near infrared spectroscopy. An Altera Cyclone IV series FPGA was used as the microcontroller in this spectral data acquisition system, which simultaneously controlled two pieces of eight channels AD conversion chip acquiring 16 channels blood pulse wave signal parallel. Under the control of FPGA, the data was cached in FPGA internal ping-pong RAM first, after that it was transferred to an SRAM chip, finally it was sent to the computer via the USB port. Experiment result shows that the spectral data acquisition system can collect 16 channels signal parallel and fast under the sampling frequency of 19 531 Hz and the repetitive signal-to-noise ratio is over 40 000â¶1. The system can collect 305 spectrograms per second, more over it can get high SNR human body blood pulse wave signal under the same circumstances. The spectral data acquisition system satisfies the basic requirements of the noninvasive blood constituent examination instrument by NIRS and it can make the instrument collect the human body blood pulse wave data at a high speed. The main innovation point of this article is applying FPGA to the spectral data acquisition system of near infrared noninvasive blood constituent examination instrument. FPGA is able to simultaneously control two pieces of eight channels AD conversion chip acquiring 16 channels blood pulse wave signal parallel. By using FPGA as the microcontroller of the spectral data acquisition system, we solve the problem that SCM as the microcontroller can't realize multi-channel high speed data acquisition and storage of large amounts of data. The acquisition speed is greatly faster than the system before. The second innovation point of this article is we use FPGA internal resources establish a ping-pong RAM buffer. The spectral data from the AD chip is 24 bit, however, the SRAM chip has only 16 bit data bus. Via the ping-pang RAM buffer, the spectral data can transfer from AD chip to SRAM chip. The ping-pong RAM can realize different digits data seamless transfer from AD chip to SRAM chip.
RESUMEN
In the present paper, 60 whole wheat flour samples were prepared and corresponding NIR spectra were collected. After the determinations of calibration range, several spectral sub-regions containing calibration range and prepared for the correction using multiple scattering correction (MSC) were obtained in the whole spectral region firstly, and MSC correction based on different spectral sub-region followed subsequently. Corresponding spectral data were obtained from the fixed calibration range of the spectra corrected based on different regions. Several partial least squares regression (PLSR) calibration models for analyzing protein content of whole wheat flour were established based on corresponding spectral data, and according to the performance about the calibration coefficient and the root mean square error of cross validation (RMSEV) of every calibration, the effects of MSC pretreatment spectral region on PLSR calibration results were investigated and the pretreatment spectral regions were optimized by comparing theperformance of more calibration models. For the optimized calibration, the calibration coefficient and the RMSECV improved compared with the calibration established based on the spectral data corrected using MSC in the fixed region of calibration. The correlation coefficient can be raised from 0.96 to 0.98 and RMSECV can be decreased from 0.37% to 0.32%. The results show that the capability of MSC on correcting the spectral interference information of non-chemical absorption can be influenced by preprocessing spectral regions, the performance of calibration model can be improved by optimizing the MSC pretreatment spectral region, and the appropriate pretreatment spectral region is prerequisite to obtain the best calibration results while using MSC for near-infrared spectra analysis.
RESUMEN
The present paper studies the best detector-distance to improve the near-infrared spectrum signal intensity of the dermis layer and eliminate the interference of the epidermis and subcutaneous layer. First, we analyzed the organizational structure of the skin and calculated the tissue optical parameters of different layers. And we established the Monte Carlo model with the example of glucose absorption peak at 2 270 nm. Then, we used the Monte Carlo method to simulate the light transmission rules in the skin, obtaining the average path length, the average visit depth and the fractions of absorbed energy at each layer with the change in critical angle and detector-distance. The results show that when the photons are incident at an angle less than 45 degrees, you can ignore the effect of the incident angle on photon transmission path, and when the detector-distance is 1 mm, the fraction of absorbed photon energy by the dermis layer is the largest, while it can ensure more energy received by detector. We determined that the best detector-distance is 1mm, which successfully avoids the interference of the epidermis spectral information and obtains large amounts of blood in the dermis layer, which is conducive to the near-infrared non-invasive measurement of biochemical components and the subsequent experiments.
Asunto(s)
Glucosa/análisis , Absorción Cutánea , Piel/anatomía & histología , Espectroscopía Infrarroja Corta , Modelos Teóricos , Método de Montecarlo , FotonesRESUMEN
OBJECTIVE: Our study aimed to determine whether there exists an association between low-grade systemic inflammation, as measured by serum C-reactive protein (CRP), and the risk of lower-extremity deep venous thrombosis (LEDVT) in patients with primary intracerebral hemorrhage (ICH). METHODS: This observational study was retrospectively conducted on patients with primary ICH who were presented to two tertiary medical centers between January 2021 and August 2022. The primary outcome was detecting LEDVT occurrence within 14 days from the onset of the acute ICH episode. Weighted logistic regression and restricted cubic spline models were employed to estimate the association between CRP and LEDVT following 1:1 propensity score matching (PSM). RESULTS: Of the 538 patients with primary ICH who met the inclusion criteria, 76 (14.13%) experienced LEDVT. Based on the cut-off levels of CRP measured upon admission from the receiver operating characteristic (ROC) curve, patients with primary ICH were categorized into two groups: (i) CRP < 1.59 mg/L and (ii) CRP ≥ 1.59 mg/L. After 1:1 PSM, the LEDVT events occurred in 24.6% of patients with CRP ≥ 1.59 mg/L and 4.1% of patients with CRP < 1.59 mg/L (P < 0.001). ROC curve revealed the area under the ROC curve of 0.717 [95% confidence interval (CI) 0.669-0.761, P < 0.001] for CRP to predict LEDVT with a sensitivity of 85.71% and specificity of 56.29%. After adjusting for all confounding variables, the occurrence of LEDVT in ICH patients with higher CRP levels (≥ 1.59 mg/L) was 10.8 times higher compared to those with lower CRP levels (95% CI 4.5-25.8, P < 0.001). A nonlinear association was observed between CRP and an increased risk of LEDVT in the fully adjusted model (P for overall < 0.001, P for nonlinear = 0.001). The subgroup results indicated a consistent positive link between CRP and LEDVT events following primary ICH. CONCLUSIONS: Higher initial CRP levels (CRP as a dichotomized variable) in patients with primary ICH are significantly associated with an increased risk of LEDVT and may help identify high-risk patients with LEDVT. Clinicians should be vigilant to enable early and effective intervention in patients at high risk of LEDVT.
Asunto(s)
Proteína C-Reactiva , Hemorragia Cerebral , Extremidad Inferior , Trombosis de la Vena , Humanos , Proteína C-Reactiva/metabolismo , Proteína C-Reactiva/análisis , Masculino , Femenino , Trombosis de la Vena/sangre , Trombosis de la Vena/etiología , Hemorragia Cerebral/sangre , Hemorragia Cerebral/etiología , Persona de Mediana Edad , Extremidad Inferior/irrigación sanguínea , Estudios Retrospectivos , Anciano , Biomarcadores/sangre , Curva ROC , Factores de RiesgoRESUMEN
Background: Lysyl oxidase enzymes (LOXs), as extracellular matrix (ECM) protein regulators, play vital roles in tumor progression by remodeling the tumor microenvironment. However, their roles in glioblastoma (GBM) have not been fully elucidated. Methods: The genetic alterations and prognostic value of LOXs were investigated via cBioPortal. The correlations between LOXs and biological functions/molecular tumor subtypes were explored in The Cancer Genome Atlas (TCGA) and the Chinese Glioma Genome Atlas (CGGA). After KaplanâMeier and Cox survival analyses, a Loxl1-based nomogram and prognostic risk score model (PRSM) were constructed and evaluated by time-dependent receiver operating characteristic curves, calibration curves, and decision curve analyses. Tumor enrichment pathways and immune infiltrates were explored by single-cell RNA sequencing and TIMER. Loxl1-related changes in tumor viability/proliferation and invasion were further validated by CCK-8, western blot, wound healing, and Transwell invasion assays. Results: GBM patients with altered LOXs had poor survival. Upregulated LOXs were found in IDH1-wildtype and mesenchymal (not Loxl1) GBM subtypes, promoting ECM receptor interactions in GBM. The Loxl1-based nomogram and the PRSM showed high accuracy, reliability, and net clinical benefits. Loxl1 expression was related to tumor invasion and immune infiltration (B cells, neutrophils, and dendritic cells). Loxl1 knockdown suppressed GBM cell proliferation and invasion by inhibiting the EMT pathway (through the downregulation of N-cadherin/Vimentin/Snai1 and the upregulation of E-cadherin). Conclusion: The Loxl1-based nomogram and PRSM were stable and individualized for assessing GBM patient prognosis, and the invasive role of Loxl1 could provide a promising therapeutic strategy.
Asunto(s)
Neoplasias Encefálicas , Transición Epitelial-Mesenquimal , Glioblastoma , Invasividad Neoplásica , Humanos , Glioblastoma/patología , Glioblastoma/genética , Glioblastoma/mortalidad , Glioblastoma/metabolismo , Transición Epitelial-Mesenquimal/genética , Pronóstico , Neoplasias Encefálicas/patología , Neoplasias Encefálicas/genética , Neoplasias Encefálicas/mortalidad , Neoplasias Encefálicas/metabolismo , Línea Celular Tumoral , Nomogramas , Receptores Depuradores de Clase E/metabolismo , Receptores Depuradores de Clase E/genética , Masculino , Microambiente Tumoral , Femenino , Aminoácido Oxidorreductasas/genética , Aminoácido Oxidorreductasas/metabolismo , Proliferación Celular , Biomarcadores de Tumor/metabolismo , Biomarcadores de Tumor/genética , Regulación Neoplásica de la Expresión Génica , Proteína-Lisina 6-Oxidasa/metabolismo , Proteína-Lisina 6-Oxidasa/genética , Isocitrato Deshidrogenasa/genética , Isocitrato Deshidrogenasa/metabolismoRESUMEN
Near-infrared spectroscopy (NIRS) is a reliable, rapid, and non-destructive analytical method widely applied in as a number of fields such as agriculture, food, chemical and oil industry. In order to suit different applications, near-infrared spectrometers are now varied. Portable near-infrared spectrometers are needed for rapid on-site identification and analysis. Instruments of this kind are rugged, compact and easy to be transported. In this paper, the current states of portable near-infrared spectrometers are reviewed. Portable near-infrared spectrometers are built of different monochromator systems: filter, grating, Fourier-transform methods, acousto-optic tunable filter (AOTF) and a large number of new methods based on micro-electro-mechanical systems (MEMS). The first part focuses on working principles of different monochromator systems. Advantages and disadvantages of different systems are also briefly mentioned. Descriptions of each method are given in turn. Typical spectrometers of each kind are introduced, and some parameters of these instruments are listed. In the next part we discuss sampling adapters, display, power supply and some other parts, which are designed to make the spectrometer more portable and easier to use. In the end, the current states of portable near-infrared spectrometers are summarized. Future trends of development of portable near-infrared spectrometers in China and abroad are discussed.
Asunto(s)
Óptica y Fotónica , Espectroscopía Infrarroja Corta/instrumentación , Agricultura , ChinaRESUMEN
High signal-to-noise ratio (SNR) of system is necessary to obtain accurate blood components in near infrared noninvasive biochemical analysis. In order to improve SNR of analytical system, high-efficiency double compound parabolic concentrator (DCPC) system was researched, which was aimed at increasing light utilization efficiency. Firstly, with the request of collection efficiency in near infrared noninvasive biochemical analysis, the characteristic of emergent rays through compound parabolic concentrator (CPC) was analyzed. Then the maximum focusing angle range of the first stage CPC was determined. Secondly, the light utilization efficiency of truncated type was compared with standard DCPC, thus the best structure parameters of DCPC system were optimized. Lastly, combined with optical parameters of skin tissue, calculations were operated when incident wavelength is 1 000 nm. The light utilization efficiency of DCPC system, CPC-focusing mirror system, and non-optical collecting system was calculated. The results show that the light utilization efficiency of the three optical systems is 1.46%, 0.84% and 0.26% respectively. So DCPC system enhances collecting ability for human diffuse reflection light, and helps improve SNR of noninvasive biochemical analysis system and overall analysis accuracy effectively.
Asunto(s)
Análisis Químico de la Sangre/instrumentación , Análisis Químico de la Sangre/métodos , Espectroscopía Infrarroja Corta/métodos , Calibración , Diseño de Equipo , Humanos , Fenómenos Ópticos , Piel/irrigación sanguíneaRESUMEN
To increase the signal-to-noise ratio (SNR) of human near infrared (NIR) spectra, so as to improve the stability and precision of calibration model, the empirical mode decomposition (EMD) method was applied. Eighty-one fingertip absorption curves were collected, with the corresponding clinical examination results obtained immediately. By means of outliers detection and removal, finally 78 samples were determined as the research objects. A three-layer back-propagation artificial neutron network (BP-ANN) model was established and worked for prediction. The results turned out that, through EMD method, the prediction correlation coefficient increased greatly from 0.74 to 0.87. RMSEP was reduced from 12.85 to 8.08 g x L(-1). Other indexes were also obviously improved. The overall results sufficiently demonstrate that it is feasible to use EMD method forhigh SNR pulse wave signals, thus improving the performance of noninvasive hemoglobin calibration models. The application of EMD method can help promote the development of noninvasive hemoglobin monitoring technology.
Asunto(s)
Algoritmos , Hemoglobinas/análisis , Procesamiento de Señales Asistido por Computador , Espectroscopía Infrarroja Corta/métodos , Artefactos , Humanos , Redes Neurales de la ComputaciónRESUMEN
In noninvasive biochemical detection, the differential spectrum method based on the change in blood volume can eliminate the interference of human tissue background in theory, and obtain effective spectrum information of blood. In order to demonstrate the effectiveness of the differential spectrum method, simulated experiment was designed. Biological molecules solutions were used for simulating serum sample, filters with different absorption characteristic were used for simulating interference of tissue background, and an adjustable path-length cell was used for simulating blood volume change. Model accuracies of pre- and post-treatment with differential spectrum method were compared. Thus treated, the root mean square error of cross validation (RMSECV) reduced from 437 to 301 mg x dL(-1). The experimental results indicate that using the differential spectrum method can effectively restrain the interference of tissue background, and greatly improve the prediction precision of calibration model.
Asunto(s)
Análisis Químico de la Sangre , Espectroscopía Infrarroja Corta , Calibración , Humanos , Modelos TeóricosRESUMEN
The spectral subtraction approach with different flow blood volume in near infrared noninvasive biochemical sensing can eliminate human tissue background interference, but at the same time the pathlength of subtracted spectrum is unknown. Thus, the model will be insufficiently effective if established directly with pathlength-unknown spectra, which is a big problem for subtracted blood volume spectrometry. In the present paper, a simulated experiment was designed to simulate this issue. The orthogonal signal correction method was proposed to eliminate the influence brought by pathlength. Compared with the PLS model before and after orthogonal signal correction, the root mean square error of cross validation (RMSECV) was from 90.17 mg x dL(-1) down to 31.62 mg x dL(-1), and the correlation coefficient was improved from 0.9787 to 0.9968. The experimental results show that using the orthogonal signal correction method can effectively restrain the interference information of path-length, and improve the prediction precision of calibration model. The conclusion in this paper sets the stage for the practical application of the spectral subtraction approach with different flow blood volume.
Asunto(s)
Determinación del Volumen Sanguíneo/métodos , Modelos Teóricos , Espectroscopía Infrarroja Corta , Volumen Sanguíneo , Calibración , HumanosRESUMEN
To establish the on-line near infrared spectral correction model for the jujube quality of Southern Xinjiang, the main influence factors of online testing results were analyzed, and the corresponding parameters were studied. First of all, the collecting conditions of different jujube were set, such as measurement condition, spectral region, and the parameters of the apparatus. With near infrared spectrometer and self-designed jujube batch collecting attachment, the quality spectrum of jujube was obtained, and combining spectral preprocessing and detection precision, condition parameters were selected. Secondly, through PLS spectrum correction with different modeling parameters and two-dimensional correlation spectroscopy analysis, Brix characteristic spectral parameters were selected. The results showed that with sugar degree central wavelength 9116, 9 418 and 10,500 cm(-1), acquisition resolution 16 cm(-1), and scan number 8, the sugar degree relative error was 8%-10%, the size of single grain jujube spectra was reduced to 1/10 of the original, and the time was reduced to 3 seconds. It was concluded that with the experimental parameters, the spectra were compressed, a primary online correction model was established, and the jujube quality online detection with near infrared spectroscopy was basically realized.
Asunto(s)
Calidad de los Alimentos , Espectroscopía Infrarroja Corta , Ziziphus , Carbohidratos/análisis , Frutas , Modelos TeóricosRESUMEN
The aim of our study was to investigate the pharmacokinetics and safety of human tissue urokinase type plasminogen activator (HTUPA) in healthy Chinese subjects after intravenous administration. Thirty-two subjects were given intravenous injection doses of 5-35 mg of HTUPA for safety evaluation. Twenty-four subjects were given 10, 20 or 30 mg HTUPA for pharmacokinetic assessment. Safety and tolerance were evaluated by monitoring adverse events, laboratory parameters, electrocardiography and vital signs. HTUPA concentration in human serum samples was determined by an enzyme-linked immunosorbent assay (ELISA) method. The main pharmacokinetic parameters were calculated by DAS software. HTUPA was generally well tolerated and in the whole study course no serious adverse events occurred. The main pharmacokinetic parameters were as follows: geometric mean [95% confidence interval, CI] for t1/2 were 1.5 (1.4, 1.6), 1.3 (1.2, 1.4), and 1.2 (1.2, 1.3) h, AUC0-t were 1.0 (0.7, 1.3), 2.1 (1.5, 2.7), and 5.6 (4.7, 6.6) mg h L(-1), AUC0-∞ were 1.1 (0.8, 1.3), 2.1 (1.5, 2.7), and 5.8 (4.7, 6.7) mg h L(-1) for 10, 20, and 30 mg group, respectively. The main pharmacokinetic parameters were not significantly different between males and females (P>0.05). No serious adverse events were reported by the subjects or revealed by clinical or laboratory examinations, suggesting the given doses were safe and well tolerated.
Asunto(s)
Fibrinolíticos/farmacocinética , Activador de Plasminógeno de Tipo Uroquinasa/farmacocinética , Adulto , Área Bajo la Curva , China , Relación Dosis-Respuesta a Droga , Ensayo de Inmunoadsorción Enzimática , Femenino , Fibrinolíticos/administración & dosificación , Fibrinolíticos/efectos adversos , Semivida , Humanos , Inyecciones Intravenosas , Masculino , Ingeniería de Proteínas/métodos , Factores Sexuales , Programas Informáticos , Activador de Plasminógeno de Tipo Uroquinasa/administración & dosificación , Activador de Plasminógeno de Tipo Uroquinasa/efectos adversos , Adulto JovenRESUMEN
Soil is the foundation of agricultural production. Rapid analysis of soil nutrients, using near infrared spectral analysis technology, can guide process of agricultural production. Developing near-infrared measuring system with discrete wavelength will change the extensive operation situation of agricultural production. First, the spectra of 85 black soil samples of northeast China, collected by FOSS XDS near-infrared spectrometer were analyzed using the correlation spectra and successive projection algorithm. Then, the characteristic wavelengths of total nitrogen and organic matter were obtained. After that the authors collected the spectra of soil samples using the measuring system with high signal to noise ratio (SNR) that the authors developed. The calibration models for total nitrogen and organic matter were established. The root mean square error of prediction (RMSEP) of total nitrogen and organic matter is 0.019% and 0.36% respectively, and the correlation coefficient of prediction (R(P)) is 0.851 and 0.923, respectively. Experimental results indicate that the characteristic wavelengths for total nitrogen and organic matter can be obtained through the near infrared spectra analyses. The measuring system can be used for soil nutrient analysis and lays the foundation for the industrial applications.
RESUMEN
BACKGROUND: The objective was to explore the therapeutic effect of autologous adipose-derived stem cells (ADSCs) combined with ShakeGel™3D transplantation to activate the BMP7-Smad5 signaling pathway to treat intrauterine adhesions (IUA). METHODS: Autologous ADSCs were isolated and then merged with ShakeGel™3D. The IUA model was established by mechanical injury. The third generation of autologous ADSCs was injected directly into the uterus in combination with ShakeGel™3D. After 7 days of treatment, endometrial morphology, number of endometrial glands, endometrial fibrosis area, and fibrosis biomarker analysis by RT-PCR and IHC were examined. BMP7 and phosphorylation of Smad5 were also detected, and the recovery of infertility function in treated mice was evaluated. RESULTS: Fluorescence-activated cell sorting (FACS) showed that autologous ADSCs expressed CD105 (99.1%), CD29 (99.6%), and CD73 (98.9%). Autologous ADSCs could still maintain a good growth state in ShakeGel™3D. Histological examination revealed that the number of endometrial glands increased significantly, and the area of fibrosis decreased. At the same time, the expression of BMP7 and Smad5 in the ADSCs + Gel group was significantly upregulated, and the final reproductive function of this group was partly recovered. CONCLUSIONS: Autologous ADSCs can be used in combination with ShakeGel™3D to maintain functionality and create a viable three-dimensional growth environment. The combined transplantation of autologous ADSCs and ShakeGel™3D promotes the recovery of damaged endometrial tissue by increasing BMP7-Smad5 signal transduction, resulting in endometrium thickening, increased number of glands, and decreased fibrosis, leading to restoration of partial fertility.
Asunto(s)
Enfermedades Uterinas , Tejido Adiposo , Animales , Proteína Morfogenética Ósea 7/genética , Femenino , Humanos , Ratones , Transducción de Señal , Proteína Smad5 , Células Madre , Adherencias TisularesRESUMEN
OBJECTIVE: To ascertain whether the carrier rate is high in Quanzhou which is next to Taiwan in South of the Yangtze River. METHODS: Population analysis of three SLC25A13 mutations, i.e. 851del4, 1638-1660 dup, and IVS6+ 5G to A was carried out in 450 healthy individuals. DNA diagnostic method of 851del4 was improved by using PCR-restriction fragment length polymorphism( PCR-RFLP) with restriction enzyme HpyCH4 IV, and the results were confirmed by GeneScan method. RESULTS: Six carriers with 851del4, 3 with 1638-1660 dup and 3 with IVS6+ 5G to A was found. CONCLUSION: The high carrier rate (0.027, 12/450) obtained from testing of only three mutations indicated that there must be a certain number of patients with citrin deficiency in Quanzhou, even in Fujian. Therefore, it is important for physicians in Quanzhou, Fujian province to learn about citrin deficiency, and to diagnose and treat the patients correctly.
Asunto(s)
Pueblo Asiatico/genética , Análisis Mutacional de ADN/métodos , Proteínas de Transporte de Membrana Mitocondrial/genética , Eliminación de Secuencia/genética , Secuencia de Bases , Proteínas de Unión al Calcio/deficiencia , China , Femenino , Humanos , Masculino , Transportadores de Anión Orgánico/deficiencia , Polimorfismo de Nucleótido Simple/genéticaRESUMEN
Tobacco exposure is one of the major risks for the initiation and progress of lung cancer. The exact corresponding mechanisms, however, are mainly unknown. Recently, a growing body of evidence has been collected supporting the involvement of DNA methylation in the regulation of gene expression in cancer cells. The identification of tobacco-related signature methylation probes and the analysis of their regulatory networks at different molecular levels may be of a great help for understanding tobacco-related tumorigenesis. Three independent lung adenocarcinoma (LUAD) datasets were used to train and validate the tobacco exposure pattern classification model. A deep selecting method was proposed and used to identify methylation signature probes from hundreds of thousands of the whole epigenome probes. Then, BIMC (biweight midcorrelation coefficient) algorithm, SRC (Spearman's rank correlation) analysis, and shortest path tracing method were explored to identify associated genes at gene regulation level and protein-protein interaction level, respectively. Afterwards, the KEGG (Kyoto Encyclopedia of Genes and Genomes) pathway analysis and GO (Gene Ontology) enrichment analysis were used to analyze their molecular functions and associated pathways. 105 probes were identified as tobacco-related DNA methylation signatures. They belong to 95 genes which are involved in hsa04512, hsa04151, and other important pathways. At gene regulation level, 33 genes are uncovered to be highly related to signature probes by both BIMC and SRC methods. Among them, FARSB and other eight genes were uncovered as Hub genes in the gene regulatory network. Meanwhile, the PPI network about these 33 genes showed that MAGOH, FYN, and other five genes were the most connected core genes among them. These analysis results may provide clues for a clear biological interpretation in the molecular mechanism of tumorigenesis. Moreover, the identified signature probes may serve as potential drug targets for the precision medicine of LUAD.
Asunto(s)
Adenocarcinoma del Pulmón , Metilación de ADN , ADN de Neoplasias , Bases de Datos Genéticas , Epigenoma , Regulación Neoplásica de la Expresión Génica , Redes Reguladoras de Genes , Neoplasias Pulmonares , Uso de Tabaco , Adenocarcinoma del Pulmón/genética , Adenocarcinoma del Pulmón/metabolismo , ADN de Neoplasias/genética , ADN de Neoplasias/metabolismo , Perfilación de la Expresión Génica , Humanos , Neoplasias Pulmonares/genética , Neoplasias Pulmonares/metabolismo , Uso de Tabaco/efectos adversos , Uso de Tabaco/genética , Uso de Tabaco/metabolismoRESUMEN
The present paper proposed how to select characteristic near-infrared wavelength for soil total nitrogen by using successive projection algorithm (SPA). Spectral data are compressed by SPA in the first place to obtain the raw wavelengths. Then the group of wavelengths derived from SPA is screened by their contributions to the total nitrogen. The insensitive wavelengths for total nitrogen are eliminated, improving the parsimony of the calibration model. For the 85 soil samples in total nitrogen, SPA was used to select the raw wavelengths. After screening on contribution, the number of wavelengths dropped from 12 by direct SPA to 6. Finally, the calibration model using wavelengths selected by screening on contribution after SPA showed the correlation coefficient (R(p)) of 0.913 and the root mean square error of prediction (RMSEP) of 0.011%. This model is as precise as the one before screening on contribution, and more precise than the result derived from partial least square (PLS) for the whole spectrum. The results demonstrate that the number of wavelengths selected by SPA can be reduced without significantly compromising prediction performance using the screening on contribution. The 6 selected total nitrogen wavelengths in this paper can be a reference for designing smart filter NIR spectrometer.
RESUMEN
AIM: To rapidly detect molecular alterations in different malignancies and investigate the possible role of Tp53, C-myc, and CCND1 genes in development of tumors in human organs and their adjacent normal tissues, as well as the possible relation between well- and poorly-differentiated tumors. METHODS: A tissue array consisting of seven different tumors was generated. The tissue array included 120 points of esophagus, 120 points of stomach, 80 points of rectum, 60 points of thyroid gland, 100 points of mammary gland, 80 points of liver, and 80 points of colon. Expressions of Tp53, C-myc, and CCND1 were determined by RNA in situ hybridization. 3' terminal digoxin-labeled anti-sense single stranded oligonucleotide and locked nucleic acid modifying probe were used. RESULTS: The expression level of Tp53 gene was higher in six different carcinoma tissue samples than in paracancerous tissue samples with the exception in colon carcinoma tissue samples (P < 0.05). The expression level of CCND1 gene was significantly different in different carcinoma tissue samples with the exception in esophagus and colon carcinoma tissue samples. The expression level of C-myc gene was different in esophagus carcinoma tissue samples (chi2 = 18.495, P = 0.000), stomach carcinoma tissue samples (chi2 = 23.750, P = 0.000), and thyroid gland tissue samples (chi2 = 10.999, P = 0.004). The intensity of signals was also different in different carcinoma tissue samples and paracancerous tissue samples. CONCLUSION: Over-expression of the Tp53, CCND1, and C-myc genes appears to play a role in development of human cancer by regulating the expression of mRNA. Tp53, CCND1 and C-myc genes are significantly correlated with the development of different carcinomas.
Asunto(s)
Ciclina D1/metabolismo , Neoplasias Esofágicas/metabolismo , Regulación Neoplásica de la Expresión Génica , Proteínas Proto-Oncogénicas c-myc/metabolismo , Neoplasias Gástricas/metabolismo , Análisis de Matrices Tisulares , Proteína p53 Supresora de Tumor/metabolismo , Neoplasias de la Mama/etnología , Neoplasias de la Mama/genética , Neoplasias de la Mama/metabolismo , China , Neoplasias del Colon/etnología , Neoplasias del Colon/genética , Neoplasias del Colon/metabolismo , Ciclina D1/genética , Neoplasias Esofágicas/etnología , Neoplasias Esofágicas/genética , Humanos , Neoplasias Hepáticas/etnología , Neoplasias Hepáticas/genética , Neoplasias Hepáticas/metabolismo , Proteínas Proto-Oncogénicas c-myc/genética , ARN Mensajero/metabolismo , Neoplasias del Recto/etnología , Neoplasias del Recto/genética , Neoplasias del Recto/metabolismo , Neoplasias Gástricas/etnología , Neoplasias Gástricas/genética , Neoplasias de la Tiroides/etnología , Neoplasias de la Tiroides/genética , Neoplasias de la Tiroides/metabolismo , Proteína p53 Supresora de Tumor/genéticaRESUMEN
OBJECTIVE: To compare the efficacy and safety of staged retrograde flexible ureteroscopic lithotripsy (FURS) and miniaturized percutaneous nephrolithotomy (m-PCNL) for treatment of renal stones of 2-4 cm in diameter. METHODS: This randomized controlled trial was conducted in 70 patients with renal stones of 2-4 cm in diameter admitted in our hospital between January 2013 and December 2015. The patients were randomized to receive staged FURS (35 cases) or m-PCNL (35 cases), and the total treatment time, total hospital stay after procedure, total medical cost, treatment success, decrease in hemoglobin level and complications were compared between the two groups. RESULTS: The treatment success rate was 100% in both groups, but the complete stone-free rate was significantly lowered in FURS group than m-PCNL group (65.71% vs 94.29%, P<0.01). The average decrease in hemoglobin level was 3.37∓1.56 g/L in FURS group and 11.93∓2.24 g/L in m-PCNL group (P<0.01). The overall complication rates in the two groups were 6.25% and 9.37%, respectively (P>0.05). Minor complications (grade I by Clavien-Dindo classification) occurred in one case in FURS group (fever) and two cases in m-PCNL group (self-limiting hematuria); major complications (grade II) occurred in one case in FURS group (steinstrase) and one case in m-PCNL group (blood transfusion). In staged FURS and m-PCNL groups, the mean total treatment time was 4.06∓1.11 vs 1.26∓0.47 weeks (P<0.01), the mean hospital stay after procedure was 3.66∓1.29 vs 5.13∓0.43 days (P<0.01), and the mean total medical cost was 54 291.00 RMB ∓6149.00 vs 23 482.00 RMB ∓2317.00 (P<0.01), respectively. CONCLUSION: FURS is safe and effective for treatment of renal stones of 2-4 cm in diameter, and a staged procedure is necessary to achieve a stone-free status for large calculi. Both sophisticated equipment and rich surgical experience are essential to ensure treatment success.