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1.
Appl Environ Microbiol ; 86(3)2020 01 21.
Artículo en Inglés | MEDLINE | ID: mdl-31732571

RESUMEN

Most clinical antibiotics are derived from actinomycete natural products discovered at least 60 years ago. However, the repeated rediscovery of known compounds led the pharmaceutical industry to largely discard microbial natural products (NPs) as a source of new chemical diversity. Recent advances in genome sequencing have revealed that these organisms have the potential to make many more NPs than previously thought. Approaches to unlock NP biosynthesis by genetic manipulation of strains, by the application of chemical genetics, or by microbial cocultivation have resulted in the identification of new antibacterial compounds. Concomitantly, intensive exploration of coevolved ecological niches, such as insect-microbe defensive symbioses, has revealed these to be a rich source of chemical novelty. Here, we report the new lanthipeptide antibiotic kyamicin, which was generated through the activation of a cryptic biosynthetic gene cluster identified by genome mining Saccharopolyspora species found in the obligate domatium-dwelling ant Tetraponera penzigi of the ant plant Vachellia drepanolobium Transcriptional activation of this silent gene cluster was achieved by ectopic expression of a pathway-specific activator under the control of a constitutive promoter. Subsequently, a heterologous production platform was developed which enabled the purification of kyamicin for structural characterization and bioactivity determination. This strategy was also successful for the production of lantibiotics from other genera, paving the way for a synthetic heterologous expression platform for the discovery of lanthipeptides that are not detected under laboratory conditions or that are new to nature.IMPORTANCE The discovery of novel antibiotics to tackle the growing threat of antimicrobial resistance is impeded by difficulties in accessing the full biosynthetic potential of microorganisms. The development of new tools to unlock the biosynthesis of cryptic bacterial natural products will greatly increase the repertoire of natural product scaffolds. Here, we report a strategy for the ectopic expression of pathway-specific positive regulators that can be rapidly applied to activate the biosynthesis of cryptic lanthipeptide biosynthetic gene clusters. This allowed the discovery of a new lanthipeptide antibiotic directly from the native host and via heterologous expression.


Asunto(s)
Antibacterianos/biosíntesis , Bacteriocinas/biosíntesis , Genes Bacterianos , Saccharopolyspora/química , Animales , Antibacterianos/aislamiento & purificación , Antibacterianos/metabolismo , Hormigas/microbiología , Bacteriocinas/aislamiento & purificación , Bacteriocinas/metabolismo , Fabaceae , Familia de Multigenes , Saccharopolyspora/genética
2.
Org Biomol Chem ; 17(19): 4906-4916, 2019 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-31042251

RESUMEN

Melleolides from the honey mushroom Armillaria mellea represent a structurally diverse group of polyketide-sesquiterpene hybrids. Among various bioactivites, melleolides show antifungal effects against Aspergillus and other fungi. This bioactivity depends on a Δ2,4-double bond present in dihydroarmillylorsellinate (DAO) or arnamial, for example. Yet, the mode of action of Δ2,4-unsaturated, antifungal melleolides has been unknown. Here, we report on the molecular target of DAO in the fungus Aspergillus nidulans. Using a combination of synthetic chemistry to create a DAO-labelled probe, protein pulldown assays, MALDI-TOF-based peptide analysis and western blotting, we identify the eukaryotic translation elongation factor 2 (eEF2) as a binding partner of DAO. We confirm the inhibition of protein biosynthesis in vivo with an engineered A. nidulans strain producing the red fluorescent protein mCherry. Our work suggests a binding site dissimilar from that of the protein biosynthesis inhibitor sordarin, and highlights translational elongation as a valid antifungal drug target.


Asunto(s)
Antifúngicos/farmacología , Armillaria/efectos de los fármacos , Armillaria/metabolismo , Factor 2 de Elongación Peptídica/metabolismo , Biosíntesis de Proteínas/efectos de los fármacos , Sesquiterpenos/metabolismo , Antifúngicos/química , Armillaria/genética , Proteínas Luminiscentes/biosíntesis , Conformación Molecular , Simulación del Acoplamiento Molecular , Sesquiterpenos/química , Sesquiterpenos/farmacología , Proteína Fluorescente Roja
3.
Nature ; 502(7469): 124-8, 2013 Oct 03.
Artículo en Inglés | MEDLINE | ID: mdl-24048471

RESUMEN

Bacteria use modular polyketide synthases (PKSs) to assemble complex polyketides, many of which are leads for the development of clinical drugs, in particular anti-infectives and anti-tumoral agents. Because these multifarious compounds are notoriously difficult to synthesize, they are usually produced by microbial fermentation. During the past two decades, an impressive body of knowledge on modular PKSs has been gathered that not only provides detailed insight into the biosynthetic pathways but also allows the rational engineering of enzymatic processing lines to yield structural analogues. Notably, a hallmark of all PKS modules studied so far is the head-to-tail fusion of acyl and malonyl building blocks, which leads to linear backbones. Yet, structural diversity is limited by this uniform assembly mode. Here we demonstrate a new type of PKS module from the endofungal bacterium Burkholderia rhizoxinica that catalyses a Michael-type acetyl addition to generate a branch in the carbon chain. In vitro reconstitution of the entire PKS module, X-ray structures of a ketosynthase-branching didomain and mutagenesis experiments revealed a crucial role of the ketosynthase domain in branching the carbon chain. We present a trapped intermediary state in which acyl carrier protein and ketosynthase are covalently linked by the branched polyketide and suggest a new mechanism for chain alkylation, which is functionally distinct from terpenoid-like ß-branching. For the rice seedling blight toxin rhizoxin, one of the strongest known anti-mitotic agents, the non-canonical polyketide modification is indispensable for phytotoxic and anti-tumoral activities. We propose that the formation of related pharmacophoric groups follows the same general scheme and infer a unifying vinylogous branching reaction for PKS modules with a ketosynthase-branching-acyl-carrier-protein architecture. This study unveils the structure and function of a new PKS module that broadens the biosynthetic scope of polyketide biosynthesis and sets the stage for rationally creating structural diversity.


Asunto(s)
Burkholderia/enzimología , Modelos Moleculares , Sintasas Poliquetidas/metabolismo , Burkholderia/química , Burkholderia/genética , Catálisis , Cristalografía por Rayos X , Lactonas/metabolismo , Macrólidos/química , Mutagénesis , Sintasas Poliquetidas/genética , Estructura Terciaria de Proteína
4.
Angew Chem Int Ed Engl ; 57(35): 11223-11227, 2018 08 27.
Artículo en Inglés | MEDLINE | ID: mdl-29897642

RESUMEN

Ketosynthase (KS) domains of modular type I polyketide synthases (PKSs) typically catalyze the Claisen condensation of acyl and malonyl units to form linear chains. In stark contrast, the KS of the rhizoxin PKS branching module mediates a Michael addition, which sets the basis for a pharmacophoric δ-lactone moiety. The precise role of the KS was evaluated by site-directed mutagenesis, chemical probes, and biotransformations. Biochemical and kinetic analyses helped to dissect branching and lactonization reactions and unequivocally assign the entire sequence to the KS. Probing the range of accepted substrates with diverse synthetic surrogates in vitro, we found that the KS tolerates defined acyl chain lengths to produce five- to seven-membered lactones. These results show that the KS is multifunctional, as it catalyzes ß-branching and lactonization. Information on the increased product portfolio of the unusual, TE-independent on-line cyclization is relevant for synthetic biology approaches.


Asunto(s)
Bacillus amyloliquefaciens/enzimología , Burkholderia/enzimología , Lactonas/metabolismo , Sintasas Poliquetidas/metabolismo , Bacillus amyloliquefaciens/genética , Bacillus amyloliquefaciens/metabolismo , Burkholderia/genética , Burkholderia/metabolismo , Ciclización , Lactonas/química , Macrólidos/química , Macrólidos/metabolismo , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Sintasas Poliquetidas/química , Sintasas Poliquetidas/genética , Dominios Proteicos , Especificidad por Sustrato
5.
Microbiology (Reading) ; 163(10): 1415-1419, 2017 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-28884676

RESUMEN

MtrAB is a highly conserved two-component system implicated in the regulation of cell division in the Actinobacteria. It coordinates DNA replication with cell division in the unicellular Mycobacterium tuberculosis and links antibiotic production to sporulation in the filamentous Streptomyces venezuelae. Chloramphenicol biosynthesis is directly regulated by MtrA in S. venezuelae and deletion of mtrB constitutively activates MtrA and results in constitutive over-production of chloramphenicol. Here we report that in Streptomyces coelicolor, MtrA binds to sites upstream of developmental genes and the genes encoding ActII-1, ActII-4 and RedZ, which are cluster-situated regulators of the antibiotics actinorhodin (Act) and undecylprodigiosin (Red). Consistent with this, deletion of mtrB switches on the production of Act, Red and streptorubin B, a product of the Red pathway. Thus, we propose that MtrA is a key regulator that links antibiotic production to development and can be used to upregulate antibiotic production in distantly related streptomycetes.


Asunto(s)
Transportadoras de Casetes de Unión a ATP/genética , Antibacterianos/biosíntesis , Proteínas Bacterianas/genética , Farmacorresistencia Microbiana/genética , Streptomyces coelicolor/fisiología , Transportadoras de Casetes de Unión a ATP/metabolismo , Antibacterianos/química , Proteínas Bacterianas/metabolismo , Cromatografía Líquida de Alta Presión , Regulación Bacteriana de la Expresión Génica , Familia de Multigenes , Mutación , Metabolismo Secundario/genética , Esporas Bacterianas
6.
Nat Chem Biol ; 11(12): 949-51, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26479442

RESUMEN

Biosynthesis of rhizoxin in Burkholderia rhizoxinica affords an unusual polyketide synthase module with ketosynthase and branching domains that install the δ-lactone, conferring antimitotic activity. To investigate their functions in chain branching, we designed chimeric modules with structurally similar domains from a glutarimide-forming module and a dehydratase. Biochemical, kinetic and mutational analyses reveal a structural role of the accessory domains and multifarious catalytic actions of the ketosynthase.


Asunto(s)
Aciltransferasas/metabolismo , Burkholderia/enzimología , Sintasas Poliquetidas/metabolismo , Aciltransferasas/química , Burkholderia/metabolismo , Macrólidos/química , Macrólidos/metabolismo , Conformación Molecular , Sintasas Poliquetidas/química , Policétidos/química , Policétidos/metabolismo
7.
Appl Environ Microbiol ; 82(4): 1196-1204, 2016 02 15.
Artículo en Inglés | MEDLINE | ID: mdl-26655762

RESUMEN

The basidiomycetous tree pathogen Armillaria mellea (honey mushroom) produces a large variety of structurally related antibiotically active and phytotoxic natural products, referred to as the melleolides. During their biosynthesis, some members of the melleolide family of compounds undergo monochlorination of the aromatic moiety, whose biochemical and genetic basis was not known previously. This first study on basidiomycete halogenases presents the biochemical in vitro characterization of five flavin-dependent A. mellea enzymes (ArmH1 to ArmH5) that were heterologously produced in Escherichia coli. We demonstrate that all five enzymes transfer a single chlorine atom to the melleolide backbone. A 5-fold, secured biosynthetic step during natural product assembly is unprecedented. Typically, flavin-dependent halogenases are categorized into enzymes acting on free compounds as opposed to those requiring a carrier-protein-bound acceptor substrate. The enzymes characterized in this study clearly turned over free substrates. Phylogenetic clades of halogenases suggest that all fungal enzymes share an ancestor and reflect a clear divergence between ascomycetes and basidiomycetes.


Asunto(s)
Armillaria/metabolismo , Halogenación , Micotoxinas/metabolismo , Oxidorreductasas/metabolismo , Sesquiterpenos/metabolismo , Armillaria/enzimología , Armillaria/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Oxidorreductasas/genética
8.
J Pediatr ; 167(6): 1280-6, 2015 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-26456740

RESUMEN

OBJECTIVE: To determine the clinical utility and cost-effectiveness of universal vs targeted approach to obtaining blood cultures in children hospitalized with community-acquired pneumonia (CAP). STUDY DESIGN: We conducted a cost-effectiveness analysis using a decision tree to compare 2 approaches to ordering blood cultures in children hospitalized with CAP: obtaining blood cultures in all children admitted with CAP (universal approach) and obtaining blood cultures in patients identified as high risk for bacteremia (targeted approach). We searched the literature to determine expected proportions of high-risk patients, positive culture rates, and predicted bacteria and susceptibility patterns. Our primary clinical outcome was projected rate of missed bacteremia with associated treatment failure in the targeted approach. Costs per 100 patients and annualized costs on the national level were calculated for each approach. RESULTS: The model predicts that in the targeted approach, there will be 0.07 cases of missed bacteremia with treatment failure per 100 patients, or 133 annually. In the universal approach, 118 blood cultures would need to be drawn to identify 1 patient with bacteremia, in which the result would lead to a meaningful antibiotic change compared with 42 cultures in the targeted approach. The universal approach would cost $5178 per 100 patients or $9,214,238 annually. The targeted approach would cost $1992 per 100 patients or $3,545,460 annually. The laboratory-related cost savings attributed to the targeted approach would be projected to be $5,668,778 annually. CONCLUSIONS: This decision analysis model suggests that a targeted approach to obtaining blood cultures in children hospitalized with CAP may be clinically effective, cost-saving, and reduce unnecessary testing.


Asunto(s)
Bacteriemia/diagnóstico , Técnicas Bacteriológicas/economía , Infecciones Comunitarias Adquiridas/economía , Neumonía/economía , Antibacterianos/uso terapéutico , Bacteriemia/tratamiento farmacológico , Bacteriemia/economía , Niño , Infecciones Comunitarias Adquiridas/sangre , Infecciones Comunitarias Adquiridas/tratamiento farmacológico , Análisis Costo-Beneficio , Técnicas de Apoyo para la Decisión , Hospitalización , Humanos , Neumonía/sangre , Neumonía/tratamiento farmacológico , Sensibilidad y Especificidad
9.
Arch Anim Nutr ; 69(5): 378-98, 2015.
Artículo en Inglés | MEDLINE | ID: mdl-26305386

RESUMEN

The aim of the present study was to evaluate the influence of native, fermented and extruded wheat bran on the performance and intestinal morphology of piglets. Additionally, short-chain fatty acids (SCFA), biogenic amines, ammonia, lactic acid, pH as well as E. coli and lactic acid bacterial counts were analysed in digesta samples from three gut sections. Furthermore, the antioxidant potential in blood samples was evaluated based on the lipid radicals formed. For this purpose, 48 newly weaned piglets (28 d old) were allocated to one of the four different dietary treatment groups: no wheat bran (Control), native wheat bran, fermented wheat bran as well as extruded wheat bran. Wheat bran variants were included at 150 g/kg into the diets. All diets were mixed to reach the calculated isonitrogenic nutrient contents. Gut tissue and digesta samples were collected from the proximal jejunum, the terminal ileum and the colon ascendens, blood samples directly at slaughter. Although none of the dietary interventions had an impact on performance parameters, the amount of goblet cells in the ileum was increased upon feeding native and extruded wheat bran, compared to fermented bran (p < 0.05). The E. coli counts in colonic chyme were significantly lower (p < 0.05) in the Control group compared to the groups fed with wheat bran. The concentration of SCFA showed differences for minor compounds (p < 0.05), while linear contrast analyses revealed a reduced concentration of total SCFA in the colon following the feeding of modified wheat bran compared to native wheat bran. This may suggest that several compounds are more easily digested already in the ileum, resulting in a reduced nutrient flow into the large intestine and therefore less unexploited digesta is available as substrate for the microorganisms there. Fermentation also resulted in a significant decrease of methylamine in the colon (p < 0.05), while other biogenic amines in the ileum and colon showed no statistically significant differences. The formation of lipid radicals was decreased (p < 0.05) after feeding native wheat bran compared to the Control group. These results suggest that fermentation and extrusion of wheat bran exert some different impact regarding their physiological mode of action.


Asunto(s)
Alimentación Animal/análisis , Fibras de la Dieta/metabolismo , Tracto Gastrointestinal/efectos de los fármacos , Sus scrofa/anatomía & histología , Sus scrofa/fisiología , Fenómenos Fisiológicos Nutricionales de los Animales , Animales , Dieta/veterinaria , Fibras de la Dieta/deficiencia , Fermentación , Tracto Gastrointestinal/anatomía & histología , Sus scrofa/crecimiento & desarrollo
10.
J Nat Prod ; 77(4): 1083-7, 2014 Apr 25.
Artículo en Inglés | MEDLINE | ID: mdl-24617951

RESUMEN

In this study we report on the genomics-guided exploration of the metabolic potential of the newly discovered strain Kitasatospora sp. HKI 714. The bioinformatics analysis of the whole genome sequence revealed the presence of a biosynthetic gene cluster presumably responsible for the biosynthesis of formerly unknown endophenazine derivatives. A 200 L cultivation combined with bioactivity-guided isolation techniques revealed four new natural products belonging to the endophenazines and the 5,10-dihydrophenazines. Detailed descriptions of their biological effects, mainly focused on antimicrobial properties against several mycobacteria, are given.


Asunto(s)
Actinobacteria/química , Fenazinas/aislamiento & purificación , Bacillus subtilis/efectos de los fármacos , Productos Biológicos/metabolismo , Candida albicans/efectos de los fármacos , ADN Bacteriano/genética , ADN Bacteriano/metabolismo , Enterococcus faecalis/efectos de los fármacos , Escherichia coli/efectos de los fármacos , Genómica , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Mycobacterium avium/efectos de los fármacos , Resonancia Magnética Nuclear Biomolecular , Penicillium/efectos de los fármacos , Fenazinas/química , Filogenia , Pseudomonas aeruginosa/efectos de los fármacos , Microbiología del Suelo , Staphylococcus aureus/efectos de los fármacos
11.
BMC Med Educ ; 14: 185, 2014 Sep 06.
Artículo en Inglés | MEDLINE | ID: mdl-25194168

RESUMEN

BACKGROUND: Resuscitation is a life-saving measure usually instructed in simulation sessions. Small-group teaching is effective. However, feasible group sizes for resuscitation classes are unknown. We investigated the impact of different group sizes on the outcome of resuscitation training. METHODS: Medical students (n = 74) were randomized to courses with three, five or eight participants per tutor. The course duration was adjusted according to the group size, so that there was a time slot of 6 minutes hands-on time for every student. All participants performed an objective structured clinical examination before and after training. The teaching sessions were videotaped and resuscitation quality was scored using a checklist while we measured the chest compression parameters with a manikin. In addition, we recorded hands-on-time, questions to the tutor and unrelated conversation. RESULTS: Results are displayed as median (IQR). Checklist pass rates and scores were comparable between the groups of three, five and eight students per tutor in the post-test (93%, 100% and 100%). Groups of eight students asked fewer questions (0.5 (0.0 - 1.0) vs. 3.0 (2.0 - 4.0), p < .001), had less hands-on time (2:16 min (1:15 - 4:55 min) vs. 4:07 min (2:54 - 5:52 min), p = .02), conducted more unrelated conversations (17.0 ± 5.1 and 2.9 ± 1.7, p < 0.001) and had lower self-assessments than groups of three students per tutor (7.0 (6.1 - 9.0) and 8.2 (7.2 - 9.0), p = .03). CONCLUSIONS: Resuscitation checklist scores and pass rates after training were comparable in groups of three, five or eight medical students, although smaller groups had advantages in teaching interventions and hands-on time. Our results suggest that teaching BLS skills is effective in groups up to eight medical students, but smaller groups yielded more intense teaching conditions, which might be crucial for more complex skills or less advanced students.


Asunto(s)
Reanimación Cardiopulmonar/educación , Educación de Pregrado en Medicina , Educación Médica/métodos , Procesos de Grupo , Estructura de Grupo , Adulto , Lista de Verificación , Método Doble Ciego , Estudios de Factibilidad , Femenino , Alemania , Humanos , Masculino , Maniquíes , Estudios Prospectivos
12.
Angew Chem Int Ed Engl ; 53(43): 11645-9, 2014 Oct 20.
Artículo en Inglés | MEDLINE | ID: mdl-25214315

RESUMEN

Polyketides typically result from head-to-tail condensation of acyl thioesters to produce highly functionalized linear chains. The biosynthesis of the phytotoxin rhizoxin, however, involves a polyketide synthase (PKS) module that introduces a δ-lactone chain branch through Michael addition of a malonyl extender to an α,ß-unsaturated intermediate unit. To evaluate the scope of the branching module, polyketide mimics were synthesized and their biotransformation by the reconstituted PKS module from the Rhizopus symbiont Burkholderia rhizoxinica was monitored in vitro. The impact of the type and configuration of the δ-substituents was probed and it was found that amino-substituted surrogates yield the corresponding lactams. A carboxamide analogue was transformed into a glutarimide unit, which can be found in many natural products. Our findings illuminate the biosynthesis of glutarimide-bearing polyketides and also demonstrate the utility of this branching module for synthetic biology.


Asunto(s)
Compuestos Heterocíclicos/química , Lactamas/química , Lactonas/química , Piperidonas/química , Policétidos/química , Sintasas Poliquetidas/química
13.
Appl Environ Microbiol ; 75(24): 7631-8, 2009 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-19854918

RESUMEN

Biofuels derived from lignocellulosic biomass hold promises for a sustainable fuel economy, but several problems hamper their economical feasibility. One important problem is the presence of toxic compounds in processed lignocellulosic hydrolysates, with furfural as a key toxin. While Saccharomyces cerevisiae has some intrinsic ability to reduce furfural to the less-toxic furfuryl alcohol, higher resistance is necessary for process conditions. By comparing an evolved, furfural-resistant strain and its parent in microaerobic, glucose-limited chemostats at increasing furfural challenge, we elucidate key mechanism and the molecular basis of both natural and high-level furfural resistance. At lower concentrations of furfural, NADH-dependent oxireductases are the main defense mechanism. At furfural concentrations above 15 mM, however, (13)C-flux and global array-based transcript analysis demonstrated that the NADPH-generating flux through the pentose phosphate pathway increases and that NADPH-dependent oxireductases become the major resistance mechanism. The transcript analysis further revealed that iron transmembrane transport is upregulated in response to furfural. While these responses occur in both strains, high-level resistance in the evolved strain was based on strong induction of ADH7, the uncharacterized open reading frame (ORF) YKL071W, and four further, likely NADPH-dependent, oxireductases. By overexpressing the ADH7 gene and the ORF YKL071W, we inversely engineered significantly increased furfural resistance in the parent strain, thereby demonstrating that these two enzymes are key elements of the resistance phenotype.


Asunto(s)
Furaldehído/metabolismo , Furaldehído/farmacología , Regulación Fúngica de la Expresión Génica/efectos de los fármacos , NADP/metabolismo , Saccharomyces cerevisiae/efectos de los fármacos , Saccharomyces cerevisiae/metabolismo , Biocombustibles , NAD/metabolismo , NADH NADPH Oxidorreductasas/metabolismo , Vía de Pentosa Fosfato , Saccharomyces cerevisiae/enzimología , Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/genética , Proteínas de Saccharomyces cerevisiae/metabolismo , Transcripción Genética
14.
Nat Commun ; 9(1): 2208, 2018 06 07.
Artículo en Inglés | MEDLINE | ID: mdl-29880868

RESUMEN

Acromyrmex leafcutter ants form a mutually beneficial symbiosis with the fungus Leucoagaricus gongylophorus and with Pseudonocardia bacteria. Both are vertically transmitted and actively maintained by the ants. The fungus garden is manured with freshly cut leaves and provides the sole food for the ant larvae, while Pseudonocardia cultures are reared on the ant-cuticle and make antifungal metabolites to help protect the cultivar against disease. If left unchecked, specialized parasitic Escovopsis fungi can overrun the fungus garden and lead to colony collapse. We report that Escovopsis upregulates the production of two specialized metabolites when it infects the cultivar. These compounds inhibit Pseudonocardia and one, shearinine D, also reduces worker behavioral defenses and is ultimately lethal when it accumulates in ant tissues. Our results are consistent with an active evolutionary arms race between Pseudonocardia and Escovopsis, which modifies both bacterial and behavioral defenses such that colony collapse is unavoidable once Escovopsis infections escalate.


Asunto(s)
Actinobacteria/efectos de los fármacos , Agaricales/fisiología , Hormigas/efectos de los fármacos , Hypocreales/metabolismo , Alcaloides Indólicos/toxicidad , Actinobacteria/fisiología , Animales , Hormigas/microbiología , Hormigas/fisiología , Evolución Biológica , Vías Biosintéticas/genética , Genoma Fúngico/genética , Interacciones Huésped-Patógeno/fisiología , Hypocreales/genética , Hypocreales/aislamiento & purificación , Alcaloides Indólicos/aislamiento & purificación , Alcaloides Indólicos/metabolismo , Pruebas de Sensibilidad Microbiana , Análisis de Secuencia de ADN , Simbiosis/efectos de los fármacos
16.
Nat Commun ; 8: 15935, 2017 06 26.
Artículo en Inglés | MEDLINE | ID: mdl-28649989

RESUMEN

ß-Lactone natural products occur infrequently in nature but possess a variety of potent and valuable biological activities. They are commonly derived from ß-hydroxy-α-amino acids, which are themselves valuable chiral building blocks for chemical synthesis and precursors to numerous important medicines. However, despite a number of excellent synthetic methods for their asymmetric synthesis, few effective enzymatic tools exist for their preparation. Here we report cloning of the biosynthetic gene cluster for the ß-lactone antibiotic obafluorin and delineate its biosynthetic pathway. We identify a nonribosomal peptide synthetase with an unusual domain architecture and an L-threonine:4-nitrophenylacetaldehyde transaldolase responsible for (2S,3R)-2-amino-3-hydroxy-4-(4-nitrophenyl)butanoate biosynthesis. Phylogenetic analysis sheds light on the evolutionary origin of this rare enzyme family and identifies further gene clusters encoding L-threonine transaldolases. We also present preliminary data suggesting that L-threonine transaldolases might be useful for the preparation of L-threo-ß-hydroxy-α-amino acids.


Asunto(s)
Aminoácidos/metabolismo , Antibacterianos/biosíntesis , Proteínas Bacterianas/metabolismo , Pseudomonas fluorescens/enzimología , Transaldolasa/metabolismo , Aminoácidos/química , Antibacterianos/química , Proteínas Bacterianas/genética , Lactonas/química , Lactonas/metabolismo , Estructura Molecular , Familia de Multigenes , Pseudomonas fluorescens/química , Pseudomonas fluorescens/genética , Pseudomonas fluorescens/metabolismo , Treonina/metabolismo , Transaldolasa/genética
17.
Front Microbiol ; 8: 1145, 2017.
Artículo en Inglés | MEDLINE | ID: mdl-28702006

RESUMEN

Streptomyces bacteria make numerous secondary metabolites, including half of all known antibiotics. Production of antibiotics is usually coordinated with the onset of sporulation but the cross regulation of these processes is not fully understood. This is important because most Streptomyces antibiotics are produced at low levels or not at all under laboratory conditions and this makes large scale production of these compounds very challenging. Here, we characterize the highly conserved actinobacterial two-component system MtrAB in the model organism Streptomyces venezuelae and provide evidence that it coordinates production of the antibiotic chloramphenicol with sporulation. MtrAB are known to coordinate DNA replication and cell division in Mycobacterium tuberculosis where TB-MtrA is essential for viability but MtrB is dispensable. We deleted mtrB in S. venezuelae and this resulted in a global shift in the metabolome, including constitutive, higher-level production of chloramphenicol. We found that chloramphenicol is detectable in the wild-type strain, but only at very low levels and only after it has sporulated. ChIP-seq showed that MtrA binds upstream of DNA replication and cell division genes and genes required for chloramphenicol production. dnaA, dnaN, oriC, and wblE (whiB1) are DNA binding targets for MtrA in both M. tuberculosis and S. venezuelae. Intriguingly, over-expression of TB-MtrA and gain of function TB- and Sv-MtrA proteins in S. venezuelae also switched on higher-level production of chloramphenicol. Given the conservation of MtrAB, these constructs might be useful tools for manipulating antibiotic production in other filamentous actinomycetes.

18.
Nat Commun ; 8(1): 1206, 2017 10 31.
Artículo en Inglés | MEDLINE | ID: mdl-29089518

RESUMEN

Erythromycin, avermectin and rapamycin are clinically useful polyketide natural products produced on modular polyketide synthase multienzymes by an assembly-line process in which each module of enzymes in turn specifies attachment of a particular chemical unit. Although polyketide synthase encoding genes have been successfully engineered to produce novel analogues, the process can be relatively slow, inefficient, and frequently low-yielding. We now describe a method for rapidly recombining polyketide synthase gene clusters to replace, add or remove modules that, with high frequency, generates diverse and highly productive assembly lines. The method is exemplified in the rapamycin biosynthetic gene cluster where, in a single experiment, multiple strains were isolated producing new members of a rapamycin-related family of polyketides. The process mimics, but significantly accelerates, a plausible mechanism of natural evolution for modular polyketide synthases. Detailed sequence analysis of the recombinant genes provides unique insight into the design principles for constructing useful synthetic assembly-line multienzymes.


Asunto(s)
Vías Biosintéticas/genética , Evolución Molecular , Variación Genética , Familia de Multigenes , Bioingeniería , Sintasas Poliquetidas/genética , Sirolimus/química , Sirolimus/metabolismo
19.
Front Microbiol ; 7: 2073, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-28082956

RESUMEN

The attine ants of South and Central America are ancient farmers, having evolved a symbiosis with a fungal food crop >50 million years ago. The most evolutionarily derived attines are the Atta and Acromyrmex leafcutter ants, which harvest fresh leaves to feed their fungus. Acromyrmex and many other attines vertically transmit a mutualistic strain of Pseudonocardia and use antifungal compounds made by these bacteria to protect their fungal partner against co-evolved fungal pathogens of the genus Escovopsis. Pseudonocardia mutualists associated with the attines Apterostigma dentigerum and Trachymyrmex cornetzi make novel cyclic depsipeptide compounds called gerumycins, while a mutualist strain isolated from derived Acromyrmex octospinosus makes an unusual polyene antifungal called nystatin P1. The novelty of these antimicrobials suggests there is merit in exploring secondary metabolites of Pseudonocardia on a genome-wide scale. Here, we report a genomic analysis of the Pseudonocardia phylotypes Ps1 and Ps2 that are consistently associated with Acromyrmex ants collected in Gamboa, Panama. These were previously distinguished solely on the basis of 16S rRNA gene sequencing but genome sequencing of five Ps1 and five Ps2 strains revealed that the phylotypes are distinct species and each encodes between 11 and 15 secondary metabolite biosynthetic gene clusters (BGCs). There are signature BGCs for Ps1 and Ps2 strains and some that are conserved in both. Ps1 strains all contain BGCs encoding nystatin P1-like antifungals, while the Ps2 strains encode novel nystatin-like molecules. Strains show variations in the arrangement of these BGCs that resemble those seen in gerumycin gene clusters. Genome analyses and invasion assays support our hypothesis that vertically transmitted Ps1 and Ps2 strains have antibacterial activity that could help shape the cuticular microbiome. Thus, our work defines the Pseudonocardia species associated with Acromyrmex ants and supports the hypothesis that Pseudonocardia species could provide a valuable source of new antimicrobials.

20.
Pediatr Infect Dis J ; 24(5): 445-9, 2005 May.
Artículo en Inglés | MEDLINE | ID: mdl-15876945

RESUMEN

BACKGROUND: Current methods for in situ diagnosis of catheter-related bloodstream infections require concurrent collection of central venous catheter (CVC) and peripheral vein (PV) blood cultures. Both the pain and inconvenience of PV cultures are undesirable. METHODS: A prospective study was conducted (August 2002 to March 2004) to assess the accuracy of diagnosing catheter-related bloodstream infections based on the difference in time to detection of blood cultures drawn concurrently from 2 lumens of a multilumen CVC. This difference in time to detection between 2 lumens was compared with results of the standard criterion with paired CVC and PV blood cultures. RESULTS: Twenty-one infectious episodes were categorized as catheter-related bloodstream infections and 38 as non-catheter-related bloodstream infections. With a cutoff in difference in time to detection between 2 lumens of > or =180 minutes, the sensitivity of this test to diagnose a catheter-related bloodstream infection was 61% (95% confidence interval, 39-80%) and the specificity was 94% (95% confidence interval, 82-99%). In 4 of 7 episodes with false-negative results, the colony counts in cultures from both lumens were >400 colony-forming units/mL (maximal value reported), indicating the limitation of this method when both lumens of the catheter are colonized. With the pretest probability of catheter-related bloodstream infections ranging from 28% to 54%, the positive predictive value of a difference in time to detection between 2 lumens of > or =180 minutes for diagnosis of catheter-related bloodstream infections ranged from 81% to 93% and the negative predictive value ranged from 67% to 86%. CONCLUSION: Within the context of its limitations, this novel method provides an alternative for diagnosing catheter-related bloodstream infections among patients with a CVC, without PV cultures.


Asunto(s)
Bacteriemia/etiología , Patógenos Transmitidos por la Sangre/aislamiento & purificación , Sangre/microbiología , Cateterismo Venoso Central/efectos adversos , Neoplasias/tratamiento farmacológico , Protocolos de Quimioterapia Combinada Antineoplásica/administración & dosificación , Bacteriemia/diagnóstico , Técnicas Bacteriológicas , Niño , Preescolar , Contaminación de Equipos , Reacciones Falso Negativas , Reacciones Falso Positivas , Femenino , Humanos , Lactante , Masculino , Neoplasias/diagnóstico , Estudios Prospectivos , Sensibilidad y Especificidad , Factores de Tiempo
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