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1.

Public health actions to control new SARS-CoV-2 variants.

Grubaugh, Nathan D; Hodcroft, Emma B; Fauver, Joseph R; Phelan, Alexandra L; Cevik, Muge.

Cell ; 184(5): 1127-1132, 2021 03 04.

Artículo en Inglés | MEDLINE | ID: mdl-33581746

2.

Emergence of an early SARS-CoV-2 epidemic in the United States.

Zeller, Mark; Gangavarapu, Karthik; Anderson, Catelyn; Smither, Allison R; Vanchiere, John A; Rose, Rebecca; Snyder, Daniel J; Dudas, Gytis; Watts, Alexander; Matteson, Nathaniel L; Robles-Sikisaka, Refugio; Marshall, Maximilian; Feehan, Amy K; Sabino-Santos, Gilberto; Bell-Kareem, Antoinette R; Hughes, Laura D; Alkuzweny, Manar; Snarski, Patricia; Garcia-Diaz, Julia; Scott, Rona S; Melnik, Lilia I; Klitting, Raphaëlle; McGraw, Michelle; Belda-Ferre, Pedro; DeHoff, Peter; Sathe, Shashank; Marotz, Clarisse; Grubaugh, Nathan D; Nolan, David J; Drouin, Arnaud C; Genemaras, Kaylynn J; Chao, Karissa; Topol, Sarah; Spencer, Emily; Nicholson, Laura; Aigner, Stefan; Yeo, Gene W; Farnaes, Lauge; Hobbs, Charlotte A; Laurent, Louise C; Knight, Rob; Hodcroft, Emma B; Khan, Kamran; Fusco, Dahlene N; Cooper, Vaughn S; Lemey, Phillipe; Gardner, Lauren; Lamers, Susanna L; Kamil, Jeremy P; Garry, Robert F.

Cell ; 184(19): 4939-4952.e15, 2021 09 16.

Artículo en Inglés | MEDLINE | ID: mdl-34508652

3.

Coast-to-Coast Spread of SARS-CoV-2 during the Early Epidemic in the United States.

Fauver, Joseph R; Petrone, Mary E; Hodcroft, Emma B; Shioda, Kayoko; Ehrlich, Hanna Y; Watts, Alexander G; Vogels, Chantal B F; Brito, Anderson F; Alpert, Tara; Muyombwe, Anthony; Razeq, Jafar; Downing, Randy; Cheemarla, Nagarjuna R; Wyllie, Anne L; Kalinich, Chaney C; Ott, Isabel M; Quick, Joshua; Loman, Nicholas J; Neugebauer, Karla M; Greninger, Alexander L; Jerome, Keith R; Roychoudhury, Pavitra; Xie, Hong; Shrestha, Lasata; Huang, Meei-Li; Pitzer, Virginia E; Iwasaki, Akiko; Omer, Saad B; Khan, Kamran; Bogoch, Isaac I; Martinello, Richard A; Foxman, Ellen F; Landry, Marie L; Neher, Richard A; Ko, Albert I; Grubaugh, Nathan D.

Cell ; 181(5): 990-996.e5, 2020 05 28.

Artículo en Inglés | MEDLINE | ID: mdl-32386545

4.

Spread of a SARS-CoV-2 variant through Europe in the summer of 2020.

Hodcroft, Emma B; Zuber, Moira; Nadeau, Sarah; Vaughan, Timothy G; Crawford, Katharine H D; Althaus, Christian L; Reichmuth, Martina L; Bowen, John E; Walls, Alexandra C; Corti, Davide; Bloom, Jesse D; Veesler, David; Mateo, David; Hernando, Alberto; Comas, Iñaki; González-Candelas, Fernando; Stadler, Tanja; Neher, Richard A.

Nature ; 595(7869): 707-712, 2021 07.

Artículo en Inglés | MEDLINE | ID: mdl-34098568

5.

Functional SARS-CoV-2 cross-reactive CD4⁺ T cells established in early childhood decline with age.

Humbert, Marion; Olofsson, Anna; Wullimann, David; Niessl, Julia; Hodcroft, Emma B; Cai, Curtis; Gao, Yu; Sohlberg, Ebba; Dyrdak, Robert; Mikaeloff, Flora; Neogi, Ujjwal; Albert, Jan; Malmberg, Karl-Johan; Lund-Johansen, Fridtjof; Aleman, Soo; Björkhem-Bergman, Linda; Jenmalm, Maria C; Ljunggren, Hans-Gustaf; Buggert, Marcus; Karlsson, Annika C.

Proc Natl Acad Sci U S A ; 120(12): e2220320120, 2023 03 21.

Artículo en Inglés | MEDLINE | ID: mdl-36917669

6.

Importation of Alpha and Delta variants during the SARS-CoV-2 epidemic in Switzerland: Phylogenetic analysis and intervention scenarios.

Reichmuth, Martina L; Hodcroft, Emma B; Althaus, Christian L.

PLoS Pathog ; 19(8): e1011553, 2023 08.

Artículo en Inglés | MEDLINE | ID: mdl-37561788

7.

Epidemiological and clinical insights into the enterovirus D68 upsurge in Europe 2021/22 and the emergence of novel B3-derived lineages, ENPEN multicentre study.

Simoes, Margarida Pires; Hodcroft, Emma B; Simmonds, Peter; Albert, Jan; Alidjinou, Enagon K; Ambert-Balay, Katia; Andrés, Cristina; Antón, Andrés; Auvray, Christelle; Bailly, Jean-Luc; Baldanti, Fausto; Bastings, Capser; Beard, Stuart; Pereira, Carla Berengua; Berginc, Natasa; Bloemen, Mandy; Blomqvist, Soile; Bosma, Froukje; Böttcher, Sindy; Bubba, Laura; Buderus, Stafan; Cabrerizo, Maria; Calvo, Christina; Celma, Christina; Ceriotti, Ferruccio; Clark, Gemma; Costa, Inës; Coste-Burel, Marianne; Couderé, Karen; Cremer, Jeroen; Del Cuerpo Casas, Margarita; Daehne, Theo; de Beer, Jessica; de Ceano-Vivas, Maria; De Gascun, Cillian; de Rougemont, Alexis; Dean, Johnathan; Dembinski, Jennifer L; Diedrich, Sabine; Diez-Domingo, Javier; Dillner, Lena; Dorenberg, Dagny H; Ducancelle, Alexandra; Dudman, Susanne; Dyrdak, Robert; Eis-Huebinger, Anna-Maria; Falces-Romero, Iker; Farkas, Agnes; Feeney, Susan; Fernandez-Garcia, Maria D.

J Infect Dis ; 2024 Mar 28.

Artículo en Inglés | MEDLINE | ID: mdl-38547499

8.

Evolution, geographic spreading, and demographic distribution of Enterovirus D68.

Hodcroft, Emma B; Dyrdak, Robert; Andrés, Cristina; Egli, Adrian; Reist, Josiane; García Martínez de Artola, Diego; Alcoba-Flórez, Julia; Niesters, Hubert G M; Antón, Andrés; Poelman, Randy; Reynders, Marijke; Wollants, Elke; Neher, Richard A; Albert, Jan.

PLoS Pathog ; 18(5): e1010515, 2022 05.

Artículo en Inglés | MEDLINE | ID: mdl-35639811

9.

Multiplex qPCR discriminates variants of concern to enhance global surveillance of SARS-CoV-2.

Vogels, Chantal B F; Breban, Mallery I; Ott, Isabel M; Alpert, Tara; Petrone, Mary E; Watkins, Anne E; Kalinich, Chaney C; Earnest, Rebecca; Rothman, Jessica E; Goes de Jesus, Jaqueline; Morales Claro, Ingra; Magalhães Ferreira, Giulia; Crispim, Myuki A E; Singh, Lavanya; Tegally, Houriiyah; Anyaneji, Ugochukwu J; Hodcroft, Emma B; Mason, Christopher E; Khullar, Gaurav; Metti, Jessica; Dudley, Joel T; MacKay, Matthew J; Nash, Megan; Wang, Jianhui; Liu, Chen; Hui, Pei; Murphy, Steven; Neal, Caleb; Laszlo, Eva; Landry, Marie L; Muyombwe, Anthony; Downing, Randy; Razeq, Jafar; de Oliveira, Tulio; Faria, Nuno R; Sabino, Ester C; Neher, Richard A; Fauver, Joseph R; Grubaugh, Nathan D.

PLoS Biol ; 19(5): e3001236, 2021 05.

Artículo en Inglés | MEDLINE | ID: mdl-33961632

10.

Transmission of SARS-CoV-2 in domestic cats imposes a narrow bottleneck.

Braun, Katarina M; Moreno, Gage K; Halfmann, Peter J; Hodcroft, Emma B; Baker, David A; Boehm, Emma C; Weiler, Andrea M; Haj, Amelia K; Hatta, Masato; Chiba, Shiho; Maemura, Tadashi; Kawaoka, Yoshihiro; Koelle, Katia; O'Connor, David H; Friedrich, Thomas C.

PLoS Pathog ; 17(2): e1009373, 2021 02.

Artículo en Inglés | MEDLINE | ID: mdl-33635912

11.

Want to track pandemic variants faster? Fix the bioinformatics bottleneck.

Hodcroft, Emma B; De Maio, Nicola; Lanfear, Rob; MacCannell, Duncan R; Minh, Bui Quang; Schmidt, Heiko A; Stamatakis, Alexandros; Goldman, Nick; Dessimoz, Christophe.

Nature ; 591(7848): 30-33, 2021 03.

Artículo en Inglés | MEDLINE | ID: mdl-33649511

12.

Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.

Alm, Erik; Broberg, Eeva K; Connor, Thomas; Hodcroft, Emma B; Komissarov, Andrey B; Maurer-Stroh, Sebastian; Melidou, Angeliki; Neher, Richard A; O'Toole, Áine; Pereyaslov, Dmitriy.

Euro Surveill ; 25(32)2020 Aug.

Artículo en Inglés | MEDLINE | ID: mdl-32794443

13.

Co-circulation of multiple enterovirus D68 subclades, including a novel B3 cluster, across Europe in a season of expected low prevalence, 2019/20.

Midgley, Sofie Elisabeth; Benschop, Kimberley; Dyrdak, Robert; Mirand, Audrey; Bailly, Jean-Luc; Bierbaum, Sibylle; Buderus, Stefan; Böttcher, Sindy; Eis-Hübinger, Anna-Maria; Hönemann, Mario; Jensen, Veronika Vorobieva; Hartling, Ulla Birgitte; Henquell, Cécile; Panning, Marcus; Thomsen, Marianne Kragh; Hodcroft, Emma B; Meijer, Adam.

Euro Surveill ; 25(2)2020 01.

Artículo en Inglés | MEDLINE | ID: mdl-31964463

14.

Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison.

Ratmann, Oliver; Hodcroft, Emma B; Pickles, Michael; Cori, Anne; Hall, Matthew; Lycett, Samantha; Colijn, Caroline; Dearlove, Bethany; Didelot, Xavier; Frost, Simon; Hossain, A S Md Mukarram; Joy, Jeffrey B; Kendall, Michelle; Kühnert, Denise; Leventhal, Gabriel E; Liang, Richard; Plazzotta, Giacomo; Poon, Art F Y; Rasmussen, David A; Stadler, Tanja; Volz, Erik; Weis, Caroline; Leigh Brown, Andrew J; Fraser, Christophe.

Mol Biol Evol ; 34(1): 185-203, 2017 01.

Artículo en Inglés | MEDLINE | ID: mdl-28053012

15.

Transmission of Non-B HIV Subtypes in the United Kingdom Is Increasingly Driven by Large Non-Heterosexual Transmission Clusters.

Ragonnet-Cronin, Manon; Lycett, Samantha J; Hodcroft, Emma B; Hué, Stéphane; Fearnhill, Esther; Brown, Alison E; Delpech, Valerie; Dunn, David; Leigh Brown, Andrew J.

J Infect Dis ; 213(9): 1410-8, 2016 May 01.

Artículo en Inglés | MEDLINE | ID: mdl-26704616

16.

Scientific consensus on the COVID-19 pandemic: we need to act now.

Alwan, Nisreen A; Burgess, Rochelle Ann; Ashworth, Simon; Beale, Rupert; Bhadelia, Nahid; Bogaert, Debby; Dowd, Jennifer; Eckerle, Isabella; Goldman, Lynn R; Greenhalgh, Trisha; Gurdasani, Deepti; Hamdy, Adam; Hanage, William P; Hodcroft, Emma B; Hyde, Zoë; Kellam, Paul; Kelly-Irving, Michelle; Krammer, Florian; Lipsitch, Marc; McNally, Alan; McKee, Martin; Nouri, Ali; Pimenta, Dominic; Priesemann, Viola; Rutter, Harry; Silver, Joshua; Sridhar, Devi; Swanton, Charles; Walensky, Rochelle P; Yamey, Gavin; Ziauddeen, Hisham.

Lancet ; 396(10260): e71-e72, 2020 10 31.

Artículo en Inglés | MEDLINE | ID: mdl-33069277

17.

Genetic Variants of SARS-CoV-2-What Do They Mean?

Lauring, Adam S; Hodcroft, Emma B.

JAMA ; 325(6): 529-531, 2021 Feb 09.

Artículo en Inglés | MEDLINE | ID: mdl-33404586

18.

The Evolution and Biology of SARS-CoV-2 Variants.

Telenti, Amalio; Hodcroft, Emma B; Robertson, David L.

Cold Spring Harb Perspect Med ; 12(5)2022 05 27.

Artículo en Inglés | MEDLINE | ID: mdl-35444005

19.

Impact of cross-border-associated cases on the SARS-CoV-2 epidemic in Switzerland during summer 2020 and 2021.

Reichmuth, Martina L; Hodcroft, Emma B; Riou, Julien; Neher, Richard A; Hens, Niel; Althaus, Christian L.

Epidemics ; 41: 100654, 2022 12.

Artículo en Inglés | MEDLINE | ID: mdl-36444785

20.

Interactions between seasonal human coronaviruses and implications for the SARS-CoV-2 pandemic: A retrospective study in Stockholm, Sweden, 2009-2020.

Dyrdak, Robert; Hodcroft, Emma B; Wahlund, Martina; Neher, Richard A; Albert, Jan.

J Clin Virol ; 136: 104754, 2021 03.

Artículo en Inglés | MEDLINE | ID: mdl-33601153

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