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1.
Chemphyschem ; 22(12): 1170-1177, 2021 06 16.
Artículo en Inglés | MEDLINE | ID: mdl-33851495

RESUMEN

Symmetry breaking of parahydrogen using iridium catalysts converts singlet spin order into observable hyperpolarization. In this contribution, iridium catalysts are designed to exhibit asymmetry in their hydrides, regulated by in situ generation of deuterated ammonia governed by ammonium buffers. The concentrations of ammonia (N) and pyridine (P) provide a handle to generate a variety of stereo-chemically asymmetric N-heterocyclic carbene iridium complexes, ligating either [3xP], [2xP;N], [P;2xN] or [3xN] in an octahedral SABRE type configuration. The non-equivalent hydride positions, in correspondence with the ammonium buffer solutions, enables to extend singlet-triplet or S⟩→T0⟩ mixing at high magnetic field and experimentally induce prolonged generation of non-equilibrium longitudinal two-spin order. This long-lasting magnetization can be exploited in hyperpolarized 2D-OPSY-COSY experiments providing direct structural information on the catalyst using a single contact with parahydrogen. Separately, field cycling revealed hyperpolarization properties in low-field conditions. Controlling catalyst stereochemistry by introducing small and deuterated ligands, such as deuterated ammonia, simplifies the spin-system. This is shown to unify experimental and theoretically derived field-sweep experiments for four-spin systems.

2.
Chemphyschem ; 22(12): 1150, 2021 06 16.
Artículo en Inglés | MEDLINE | ID: mdl-34139098

RESUMEN

The front cover artwork front cover artwork is provided by NMRCoRe, the Flemish NMR/X-Ray platform for Convergence Research and was designed by Ir. Ewoud Vaneeckhaute and Dr. Eric Breynaert. The image shows the reciprocity between parahydrogen, deuterated ammonia and iridium allowing for hyperpolarized 2D NMR via long-term availability of longitudinal spin order. Read the full text of the Article at 10.1002/cphc.202100079.

3.
Phys Chem Chem Phys ; 23(15): 9457-9465, 2021 Apr 22.
Artículo en Inglés | MEDLINE | ID: mdl-33885108

RESUMEN

We have recently demonstrated the use of contactless radiofrequency pulse sequences under dissolution-dynamic nuclear polarization conditions as an attractive way of transferring polarization from sensitive 1H spins to insensitive 13C spins with low peak radiofrequency pulse powers and energies via a reservoir of dipolar order. However, many factors remain to be investigated and optimized to enable the full potential of this polarization transfer process. We demonstrate herein the optimization of several key factors by: (i) implementing more efficient shaped radiofrequency pulses; (ii) adapting 13C spin labelling; and (iii) avoiding methyl group relaxation sinks. Experimental demonstrations are presented for the case of [1-13C]sodium acetate and other relevant molecular candidates. By employing the range of approaches set out above, polarization transfer using the dipolar order mediated cross-polarization radiofrequency pulse sequence is improved by factors approaching ∼1.65 compared with previous results. Dipolar order mediated 1H→13C polarization transfer efficiencies reaching ∼76% were achieved using significantly reduced peak radiofrequency pulse powers relative to the performance of highly sophisticated state-of-the-art cross-polarization methods, indicating 13C nuclear spin polarization levels on the order of ∼32.1% after 10 minutes of 1H DNP. The approach does not require extensive pulse sequence optimization procedures and can easily accommodate high concentrations of 13C-labelled molecules.

4.
Anal Chem ; 92(22): 14867-14871, 2020 11 17.
Artículo en Inglés | MEDLINE | ID: mdl-33136383

RESUMEN

Metabolomics plays a pivotal role in systems biology, and NMR is a central tool with high precision and exceptional resolution of chemical information. Most NMR metabolomic studies are based on 1H 1D spectroscopy, severely limited by peak overlap. 13C NMR benefits from a larger signal dispersion but is barely used in metabolomics due to ca. 6000-fold lower sensitivity. We introduce a new approach, based on hyperpolarized 13C NMR at natural abundance, that circumvents this limitation. A new untargeted NMR-based metabolomic workflow based on dissolution dynamic nuclear polarization (d-DNP) for the first time enabled hyperpolarized natural abundance 13C metabolomics. Statistical analysis of resulting hyperpolarized 13C data distinguishes two groups of plant (tomato) extracts and highlights biomarkers, in full agreement with previous results on the same biological model. We also optimize parameters of the semiautomated d-DNP system suitable for high-throughput studies.


Asunto(s)
Isótopos de Carbono/análisis , Espectroscopía de Resonancia Magnética , Metabolómica/métodos , Isótopos de Carbono/química
5.
J Chem Phys ; 146(4): 041101, 2017 01 28.
Artículo en Inglés | MEDLINE | ID: mdl-28147551

RESUMEN

We report the generation and observation of long-lived spin states in deuterated methyl groups by dissolution DNP. These states are based on population imbalances between manifolds of spin states corresponding to irreducible representations of the C3v point group and feature strongly dampened quadrupolar relaxation. Their lifetime depends on the activation energies of methyl group rotation. With dissolution DNP, we can reduce the deuterium relaxation rate by a factor up to 20, thereby extending the experimentally available time window. The intrinsic limitation of NMR spectroscopy of quadrupolar spins by short relaxation times can thus be alleviated.

6.
Angew Chem Int Ed Engl ; 56(31): 9174-9177, 2017 07 24.
Artículo en Inglés | MEDLINE | ID: mdl-28590559

RESUMEN

DOSY is an NMR spectroscopy technique that resolves resonances according to the analytes' diffusion coefficients. It has found use in correlating NMR signals and estimating the number of components in mixtures. Applications of DOSY in dilute mixtures are, however, held back by excessively long measurement times. We demonstrate herein, how the enhanced NMR sensitivity provided by SABRE hyperpolarization allows DOSY analysis of low-micromolar mixtures, thus reducing the concentration requirements by at least 100-fold.

7.
Phys Chem Chem Phys ; 18(28): 19173-82, 2016 Jul 28.
Artículo en Inglés | MEDLINE | ID: mdl-27362505

RESUMEN

We detail the process of low-field thermal mixing (LFTM) between (1)H and (13)C nuclei in neat [1-(13)C] pyruvic acid at cryogenic temperatures (4-15 K). Using fast-field-cycling NMR, (1)H nuclei in the molecule were polarized at modest high field (2 T) and then equilibrated with (13)C nuclei by fast cycling (∼300-400 ms) to a low field (0-300 G) that activates thermal mixing. The (13)C NMR spectrum was recorded after fast cycling back to 2 T. The (13)C signal derives from (1)H polarization via LFTM, in which the polarized ('cold') proton bath contacts the unpolarised ('hot') (13)C bath at a field so low that Zeeman and dipolar interactions are similar-sized and fluctuations in the latter drive (1)H-(13)C equilibration. By varying mixing time (tmix) and field (Bmix), we determined field-dependent rates of polarization transfer (1/τ) and decay (1/T1m) during mixing. This defines conditions for effective mixing, as utilized in 'brute-force' hyperpolarization of low-γ nuclei like (13)C using Boltzmann polarization from nearby protons. For neat pyruvic acid, near-optimum mixing occurs for tmix∼ 100-300 ms and Bmix∼ 30-60 G. Three forms of frozen neat pyruvic acid were tested: two glassy samples, (one well-deoxygenated, the other O2-exposed) and one sample pre-treated by annealing (also well-deoxygenated). Both annealing and the presence of O2 are known to dramatically alter high-field longitudinal relaxation (T1) of (1)H and (13)C (up to 10(2)-10(3)-fold effects). Here, we found smaller, but still critical factors of ∼(2-5)× on both τ and T1m. Annealed, well-deoxygenated samples exhibit the longest time constants, e.g., τ∼ 30-70 ms and T1m∼ 1-20 s, each growing vs. Bmix. Mixing 'turns off' for Bmix > ∼100 G. That T1m≫τ is consistent with earlier success with polarization transfer from (1)H to (13)C by LFTM.

8.
Phys Chem Chem Phys ; 18(36): 25764, 2016 Sep 28.
Artículo en Inglés | MEDLINE | ID: mdl-27603570

RESUMEN

Correction for 'Low-field thermal mixing in [1-(13)C] pyruvic acid for brute-force hyperpolarization' by David T. Peat et al., Phys. Chem. Chem. Phys., 2016, 18, 19173-19182.

9.
J Am Chem Soc ; 137(26): 8428-34, 2015 Jul 08.
Artículo en Inglés | MEDLINE | ID: mdl-26098752

RESUMEN

Hyperpolarization (HP) of nuclear spins is critical for ultrasensitive nuclear magnetic resonance (NMR) and magnetic resonance imaging (MRI). We demonstrate an approach for >1500-fold enhancement of key small-molecule metabolites: 1-(13)C-pyruvic acid, 1-(13)C-sodium lactate, and 1-(13)C-acetic acid. The (13)C solution NMR signal of pyruvic acid was enhanced 1600-fold at B = 1 T and 40 °C by pre-polarizing at 14 T and ∼2.3 K. This "brute-force" approach uses only field and temperature to generate HP. The noted 1 T observation field is appropriate for benchtop NMR and near the typical 1.5 T of MRI, whereas high-field observation scales enhancement as 1/B. Our brute-force process ejects the frozen, solid sample from the low-T, high-B polarizer, passing it through low field (B < 100 G) to facilitate "thermal mixing". That equilibrates (1)H and (13)C in hundreds of milliseconds, providing (13)C HP from (1)H Boltzmann polarization attained at high B/T. The ejected sample arrives at a room-temperature, permanent magnet array, where rapid dissolution with 40 °C water yields HP solute. Transfer to a 1 T NMR system yields (13)C signals with enhancements at 80% of ideal for noted polarizing conditions. High-resolution NMR of the same product at 9.4 T had consistent enhancement plus resolution of (13)C shifts and J-couplings for pyruvic acid and its hydrate. Comparable HP was achieved with frozen aqueous lactate, plus notable enhancement of acetic acid, demonstrating broader applicability for small-molecule NMR and metabolic MRI. Brute-force avoids co-solvated free-radicals and microwaves that are essential to competing methods. Here, unadulterated samples obviate concerns about downstream purity and also exhibit slow solid-state spin relaxation, favorable for transporting HP samples.


Asunto(s)
Ácido Acético/química , Imagen por Resonancia Magnética/métodos , Espectroscopía de Resonancia Magnética/métodos , Ácido Pirúvico/química , Lactato de Sodio/química , Isótopos de Carbono/química , Diseño de Equipo , Radicales Libres , Lactatos/química , Microondas , Modelos Estadísticos , Oxígeno/química , Protones , Temperatura , Agua/química
10.
Adv Sci (Weinh) ; 10(23): e2207112, 2023 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-37211713

RESUMEN

Amino acids (AAs) and ammonia are metabolic markers essential for nitrogen metabolism and cell regulation in both plants and humans. NMR provides interesting opportunities to investigate these metabolic pathways, yet lacks sensitivity, especially in case of 15 N. In this study, spin order embedded in p-H2 is used to produce on-demand reversible hyperpolarization in 15 N of pristine alanine and ammonia under ambient protic conditions directly in the NMR spectrometer. This is made possible by designing a mixed-ligand Ir-catalyst, selectively ligating the amino group of AA by exploiting ammonia as a strongly competitive co-ligand and preventing deactivation of Ir by bidentate ligation of AA. The stereoisomerism of the catalyst complexes is determined by hydride fingerprinting using 1 H/D scrambling of the associated N-functional groups on the catalyst (i.e., isotopological fingerprinting), and unravelled by 2D-ZQ-NMR. Monitoring the transfer of spin order from p-H2 to 15 N nuclei of ligated and free alanine and ammonia targets using SABRE-INEPT with variable exchange delays pinpoints the monodentate elucidated catalyst complexes to be most SABRE active. Also RF-spin locking (SABRE-SLIC) enables transfer of hyperpolarization to 15 N. The presented high-field approach can be a valuable alternative to SABRE-SHEATH techniques since the obtained catalytic insights (stereochemistry and kinetics) will remain valid at ultra-low magnetic fields.

11.
J Phys Chem Lett ; 14(1): 95-100, 2023 Jan 12.
Artículo en Inglés | MEDLINE | ID: mdl-36573841

RESUMEN

We recently used selective 2H labeling of BDPA to investigate the Overhauser Effect (OE) dynamic nuclear polarization (DNP) mechanism in insulating solids doped with 1,3-bis(diphenylene)-2-phenylallyl (BDPA), and established that the α and γ 1H spins on the fluorene rings are responsible for generating a zero quantum (ZQ) mediated positive bulk polarization. Here, we establish that the phenyl 1H spins relax via double-quantum (DQ) processes and therefore contribute negative enhancements which attenuate the OE-DNP. With measurements at different magnetic field strengths, we show that phenyl-d5-BDPA offers >50% improvement in OE-DNP enhancement compared to h21-BDPA attaining a maximum of ∼90 at 14.1 T and 5 kHz MAS, the highest observed OE-DNP enhancement to date under these conditions. The approach may be utilized to optimize other polarizing agents exhibiting an OE, an important DNP mechanism with a favorable field and spinning frequency dependence.

12.
J Magn Reson Imaging ; 36(3): 722-32, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22581513

RESUMEN

PURPOSE: To demonstrate a three-echo fat-referenced MR thermometry technique that estimates and corrects for time-varying phase disturbances in heterogeneous tissues. MATERIALS AND METHODS: Fat protons do not exhibit a temperature-dependent frequency shift. Fat-referenced thermometry methods exploit this insensitivity and use the signal from fat to measure and correct for magnetic field disturbances. In this study, we present a fat-referenced method that uses interpolation of the fat signal to correct for phase disturbances in fat free regions. Phantom and ex vivo tissue cool-down experiments were performed to evaluate the accuracy of this method in the absence of motion. Non-heated in vivo imaging of the breast and prostate was performed to demonstrate measurement robustness in the presence of systemic and motion-induced field disturbances. Measurement accuracy of the method was compared to conventional proton resonance frequency shift MR thermometry. RESULTS: In the ex vivo porcine tissue experiment, maximum measurement error of the fat-referenced method was reduced 42% from 3.3 to 1.9°C when compared to conventional MR thermometry. In the breasts, measurement errors were reduced by up to 70% from 6.4 to 1.9°C. CONCLUSION: Ex vivo and in vivo results show that the proposed method reduces measurement errors in the heterogeneous tissue experiments when compared to conventional MR thermometry.


Asunto(s)
Tejido Adiposo/anatomía & histología , Imagen por Resonancia Magnética/métodos , Próstata/anatomía & histología , Termografía/métodos , Tejido Adiposo/fisiología , Animales , Temperatura Corporal/fisiología , Femenino , Humanos , Técnicas In Vitro , Masculino , Próstata/fisiología , Reproducibilidad de los Resultados , Sensibilidad y Especificidad , Porcinos
13.
J Phys Chem Lett ; 13(15): 3516-3522, 2022 Apr 21.
Artículo en Inglés | MEDLINE | ID: mdl-35420032

RESUMEN

Hyperpolarization using signal amplification by reversible exchange (SABRE) relies on target molecules and parahydrogen coordinating to a transition metal catalyst. Identification of this coordinated state becomes increasingly important, especially since bio-relevant targets such as pyruvate and amino acids exhibiting multiple binding sites are becoming compatible with SABRE. In this report, we present a fingerprinting method to discriminate and identify ligand binding sites without requiring the presence of a sensitive or isotope-labeled heteroatom. Adding a small concentration of protons to a deuterated medium, spontaneous 1H/D scrambling of exchangeable protons encodes the ligands each with an isotopological fingerprint. By use of rapid 2D zero quantum NMR, the binding sites are decoded from the hydrides in less than a minute. The new methodology is explained and demonstrated on Ir mixed complexes with pyridine, benzylamine, and ammonia as common N-functional ligands.


Asunto(s)
Imagen por Resonancia Magnética , Protones , Catálisis , Ligandos , Espectroscopía de Resonancia Magnética
14.
Magn Reson (Gott) ; 3(2): 183-202, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-37904870

RESUMEN

NMR-based analysis of metabolite mixtures provides crucial information on biological systems but mostly relies on 1D 1H experiments for maximizing sensitivity. However, strong peak overlap of 1H spectra often is a limitation for the analysis of inherently complex biological mixtures. Dissolution dynamic nuclear polarization (d-DNP) improves NMR sensitivity by several orders of magnitude, which enables 13C NMR-based analysis of metabolites at natural abundance. We have recently demonstrated the successful introduction of d-DNP into a full untargeted metabolomics workflow applied to the study of plant metabolism. Here we describe the systematic optimization of d-DNP experimental settings for experiments at natural 13C abundance and show how the resolution, sensitivity, and ultimately the number of detectable signals improve as a result. We have systematically optimized the parameters involved (in a semi-automated prototype d-DNP system, from sample preparation to signal detection, aiming at providing an optimization guide for potential users of such a system, who may not be experts in instrumental development). The optimization procedure makes it possible to detect previously inaccessible protonated 13C signals of metabolites at natural abundance with at least 4 times improved line shape and a high repeatability compared to a previously reported d-DNP-enhanced untargeted metabolomic study. This extends the application scope of hyperpolarized 13C NMR at natural abundance and paves the way to a more general use of DNP-hyperpolarized NMR in metabolomics studies.

15.
Proc Natl Acad Sci U S A ; 105(51): 20124-9, 2008 Dec 23.
Artículo en Inglés | MEDLINE | ID: mdl-19104070

RESUMEN

The nanoscale distributions of electron density and electric fields in GaAs semiconductor devices are displayed with NMR experiments. The spectra are sensitive to the changes to the nuclear-spin Hamiltonian that are induced by perturbations delivered in synchrony with a line-narrowing pulse sequence. This POWER (perturbations observed with enhanced resolution) method enhanced resolution up to 10(3)-fold, revealing the distribution of perturbations over nuclear sites. Combining this method with optical NMR, we imaged quantum-confined electron density in an individual AlGaAs/GaAs heterojunction via hyperfine shifts. Fits to the coherent evolution and relaxation of nuclei within a hydrogenic state established one-to-one correspondence of radial position to frequency. Further experiments displayed the distribution of photo-induced electric field within the same states via a quadrupolar Stark effect. These unprecedented high-resolution distributions discriminate between competing models for the luminescence and support an excitonic state, perturbed by the interface, as the dominant source of the magnetically modulated luminescence.


Asunto(s)
Electrones , Espectroscopía de Resonancia Magnética/métodos , Luminiscencia , Magnetismo , Teoría Cuántica
16.
Protein Expr Purif ; 72(1): 8-18, 2010 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-20226862

RESUMEN

An advanced protocol is provided to adapt cells for enhanced proliferation in and expression from deuterated minimal media. For large proteins (>20-30 kDa), deuteration levels >90% are essential for NMR characterization of structure and dynamics. In addition, the low sensitivity of NMR demands can be achieved without major sacrifice to yield. We applied the approach to human adult hemoglobin (Hb A), a 64 kDa, tetrameric protein that requires significant post-expression processing. This aspect accentuates the need for high yield. Using specially adapted JM109(DE3) Escherichia coli, we developed a shake-flask approach to express >90% deuterated NMR samples. Typical yields were 2.5-fold higher than obtained from cells adapted by more-traditional methods, while deuteration levels were increased by 17%. Ultimately, a 200 mL culture was sufficient to obtain ((2)H, (15)N)-labeled Hb A sufficient for a 200 microM, 400 microL NMR sample. This avoids need for additional equipment for fermentation, which was used in previous protocols to express Hb A. It also allows a much smaller culture volume than often required by such equipment, for corresponding linear reductions in the cost of labeled starting materials. We tested the adaptation protocol with both JM109 and JM109(DE3) E. coli, and with pre- and post-transformation with the Hb A expression plasmid (pHE7). The (DE3) strain consistently outperformed its parent strain in response to adaptation, with the latter failing to survive adaptation in multiple trials. In addition, pre-transformed cells were consistently more receptive to adaptation. Finally, we also detail updated protocols to isolate Hb A in its functional form.


Asunto(s)
Escherichia coli/genética , Hemoglobina A/química , Hemoglobina A/genética , Resonancia Magnética Nuclear Biomolecular , Deuterio/metabolismo , Expresión Génica , Hemoglobina A/aislamiento & purificación , Hemoglobina A/metabolismo , Humanos , Plásmidos/genética , Conformación Proteica , Transformación Genética
17.
J Phys Chem A ; 114(39): 10634-45, 2010 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-20839890

RESUMEN

Radiofrequency electric (E) fields oscillating at twice the usual NMR frequency (2ω(0)) can induce double-quantum transitions in quadrupolar nuclei, an NMR Stark effect. Characterization of such is of interest to aid understanding of electrostatic effects in NMR spectra. Calibration of Stark responses to an applied electric field may also be used to assess native fields within molecules and materials. We present high-field (14.1 T), room-temperature NMR experiments to calibrate the 2ω(0) Stark response in crystalline GaAs. This system presents an important test of current techniques and conditions, as historical studies at low field (500-900 mT) and low temperature (77 K) provide a basis for comparison. Our measurements of steady state response reveal the quadrupolar Stark tuning rate for (69)Ga in this material. The value, ß(Q) = (11.5 ± 0.1) × 10(12) m(-1), is 3.6 times larger than the most-reliable prior result. In the process, we also uncovered a previously unobserved double-quantum steady state coherence. It appears as a completely separable dispersive signal component in quadrature-detected presaturation spectra versus offset from 2ω(0). The new component may eventually afford an independent route to calibrating ß(Q). Finally, we demonstrated exceptional agreement with theory of the orientation-dependent Stark response for rotation of the sample relative to B(0) over a range of 90° and for E-field amplitudes from 30-180 V/cm.


Asunto(s)
Arsénico/química , Galio/química , Espectroscopía de Resonancia Magnética , Temperatura
18.
J Phys Chem A ; 114(18): 5743-51, 2010 May 13.
Artículo en Inglés | MEDLINE | ID: mdl-20394397

RESUMEN

Electrostatic influences on NMR parameters are well accepted. Experimental and computational routes have been long pursued to understand and utilize such Stark effects. However, existing approaches are largely indirect informants on electric fields, and/or are complicated by multiple causal factors in spectroscopic change. We present a system to directly measure quadrupolar Stark effects from an applied electric (E) field. Our apparatus and applications are relevant in two contexts. Each uses a radiofrequency (rf) E field at twice the nuclear Larmor frequency (2omega(0)). The mechanism is a distortion of the E-field gradient tensor that is linear in the amplitude (E(0)) of the rf E field. The first uses 2omega(0) excitation of double-quantum transitions for times similar to T(1) (the longitudinal spin relaxation time). This perturbs the steady state distribution of spin population. Nonlinear analysis versus E(0) can be used to determine the Stark response rate. The second context uses POWER (perturbations observed with enhanced resolution) NMR. Here, coherent, short-time (<

Asunto(s)
Espectroscopía de Resonancia Magnética , Espectroscopía de Resonancia Magnética/métodos , Temperatura
19.
J Mol Biol ; 368(1): 131-49, 2007 Apr 20.
Artículo en Inglés | MEDLINE | ID: mdl-17336327

RESUMEN

The enzyme triosephosphate isomerase (TIM) is a model of catalytic efficiency. The 11 residue loop 6 at the TIM active site plays a major role in this enzymatic prowess. The loop moves between open and closed states, which facilitate substrate access and catalysis, respectively. The N and C-terminal hinges of loop 6 control this motion. Here, we detail flexibility requirements for hinges in a comparative solution NMR study of wild-type (WT) TIM and a quintuple mutant (PGG/GGG). The latter contained glycine substitutions in the N-terminal hinge at Val167 and Trp168, which follow the essential Pro166, and in the C-terminal hinge at Lys174, Thr175, and Ala176. Previous work demonstrated that PGG/GGG has a tenfold higher Km value and 10(3)-fold reduced k(cat) relative to WT with either d-glyceraldehyde 3-phosphate or dihyrdroxyacetone phosphate as substrate. Our NMR results explain this in terms of altered loop-6 dynamics in PGG/GGG. In the mutant, loop 6 exhibits conformational heterogeneity with corresponding motional rates <750 s(-1) that are an order of magnitude slower than the natural WT loop 6 motion. At the same time, nanosecond timescale motions of loop 6 are greatly enhanced in the mutant relative to WT. These differences from WT behavior occur in both apo PGG/GGG and in the form bound to the reaction-intermediate analog, 2-phosphoglycolate (2-PGA). In addition, as indicated by 1H, 15N and 13CO chemical-shifts, the glycine substitutions diminished the enzyme's response to ligand, and induced structural perturbations in apo and 2-PGA-bound forms of TIM that are atypical of WT. These data show that PGG/GGG exists in multiple conformations that are not fully competent for ligand binding or catalysis. These experiments elucidate an important principle of catalytic hinge design in proteins: structural rigidity is essential for focused motional freedom of active-site loops.


Asunto(s)
Pliegue de Proteína , Triosa-Fosfato Isomerasa/química , Secuencia de Aminoácidos , Animales , Dominio Catalítico , Pollos , Glicina/genética , Modelos Biológicos , Modelos Moleculares , Proteínas Mutantes/química , Mutación , Resonancia Magnética Nuclear Biomolecular , Unión Proteica , Estructura Terciaria de Proteína , Triosa-Fosfato Isomerasa/genética , Triosa-Fosfato Isomerasa/metabolismo
20.
J Magn Reson ; 180(1): 93-104, 2006 May.
Artículo en Inglés | MEDLINE | ID: mdl-16458551

RESUMEN

This work examines the robustness of fitting of parameters describing conformational exchange (k(ex), p(a/b), and Deltaomega) processes from CPMG relaxation dispersion data. We have analyzed the equations describing conformational exchange processes for the intrinsic inter-dependence of their parameters that leads to the existence of multiple equivalent solutions, which equally satisfy the experimental data. We have used Monte-Carlo simulations and fitting to the synthetic data sets as well as the direct 3-D mapping of the parameter space of k(ex), p(a/b), and Deltaomega to quantitatively assess the degree of the parameter inter-dependence. The demonstrated high correlation between parameters can preclude accurate dynamics parameter estimation from NMR spin-relaxation data obtained at a single static magnetic field. The strong parameter inter-dependence can readily be overcome through acquisition of spin-relaxation data at more than one static magnetic field thereby allowing accurate assessment of conformational exchange properties.


Asunto(s)
Resonancia Magnética Nuclear Biomolecular/métodos , Proteínas/química , Algoritmos , Modelos Moleculares , Modelos Estadísticos , Conformación Proteica
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