Generalization of Turbulent Pair Dispersion to Large Initial Separations.

We present a generalization of turbulent pair dispersion to large initial separations (η

Flow sensor based on the snap-through detection of a curved micromechanical beam.

We report on a flow velocity measurement technique based on snap-through detection of an electrostatically actuated, bistable micromechanical beam. We show that induced elecro-thermal Joule heating and the convective air cooling change the beam curvature and consequently the critical snap-through voltage (VST ). Using single crystal silicon beams, we demonstrate the snap-through voltage to flow velocity sensitivity of dV ST/du ≈ 0.13 V s m -1 with a power consumption of ≈ 360 µ W. Our experimental results were in accord with the reduced order, coupled, thermo-electro-mechanical model prediction. We anticipate that electrostatically induced snap-through in curved, micromechanical beams will open new directions for the design and implementation of downscaled flow sensors for autonomous applications and environmental sensors.

Hydrodynamic regime determines the feeding success of larval fish through the modulation of strike kinematics.

Larval fishes experience extreme mortality rates, with 99% of a cohort perishing within days after starting to actively feed. While recent evidence suggests that hydrodynamic factors contribute to constraining larval feeding during early ontogeny, feeding is a complex process that involves numerous interacting behavioural and biomechanical components. How these components change throughout ontogeny and how they contribute to feeding remain unclear. Using 339 observations of larval feeding attempts, we quantified the effects of morphological and behavioural traits on feeding success of Sparus aurata larvae during early ontogeny. Feeding success was determined using high-speed videography, under both natural and increased water viscosity treatments. Successful strikes were characterized by Reynolds numbers that were an order of magnitude higher than those of failed strikes. The pattern of increasing strike success with increasing age was driven by the ontogeny of traits that facilitate the transition to higher Reynolds numbers. Hence, the physical growth of a larva plays an important role in its transition to a hydrodynamic regime of higher Reynolds numbers, in which suction feeding is more effective.

Breakup of Finite-Size Colloidal Aggregates in Turbulent Flow Investigated by Three-Dimensional (3D) Particle Tracking Velocimetry.

Aggregates grown in mild shear flow are released, one at a time, into homogeneous isotropic turbulence, where their motion and intermittent breakup is recorded by three-dimensional particle tracking velocimetry (3D-PTV). The aggregates have an open structure with a fractal dimension of ∼2.2, and their size is 1.4 ± 0.4 mm, which is large, compared to the Kolmogorov length scale (η = 0.15 mm). 3D-PTV of flow tracers allows for the simultaneous measurement of aggregate trajectories and the full velocity gradient tensor along their pathlines, which enables us to access the Lagrangian stress history of individual breakup events. From this data, we found no consistent pattern that relates breakup to the local flow properties at the point of breakup. Also, the correlation between the aggregate size and both shear stress and normal stress at the location of breakage is found to be weaker, when compared with the correlation between size and drag stress. The analysis suggests that the aggregates are mostly broken due to the accumulation of the drag stress over a time lag on the order of the Kolmogorov time scale. This finding is explained by the fact that the aggregates are large, which gives their motion inertia and increases the time for stress propagation inside the aggregate. Furthermore, it is found that the scaling of the largest fragment and the accumulated stress at breakup follows an earlier established power law, i.e., dfrag ∼ σ(-0.6) obtained from laminar nozzle experiments. This indicates that, despite the large size and the different type of hydrodynamic stress, the microscopic mechanism causing breakup is consistent over a wide range of aggregate size and stress magnitude.

Automated detection of feeding strikes by larval fish using continuous high-speed digital video: a novel method to extract quantitative data from fast, sparse kinematic events.

Using videography to extract quantitative data on animal movement and kinematics constitutes a major tool in biomechanics and behavioral ecology. Advanced recording technologies now enable acquisition of long video sequences encompassing sparse and unpredictable events. Although such events may be ecologically important, analysis of sparse data can be extremely time-consuming and potentially biased; data quality is often strongly dependent on the training level of the observer and subject to contamination by observer-dependent biases. These constraints often limit our ability to study animal performance and fitness. Using long videos of foraging fish larvae, we provide a framework for the automated detection of prey acquisition strikes, a behavior that is infrequent yet critical for larval survival. We compared the performance of four video descriptors and their combinations against manually identified feeding events. For our data, the best single descriptor provided a classification accuracy of 77-95% and detection accuracy of 88-98%, depending on fish species and size. Using a combination of descriptors improved the accuracy of classification by ∼2%, but did not improve detection accuracy. Our results indicate that the effort required by an expert to manually label videos can be greatly reduced to examining only the potential feeding detections in order to filter false detections. Thus, using automated descriptors reduces the amount of manual work needed to identify events of interest from weeks to hours, enabling the assembly of an unbiased large dataset of ecologically relevant behaviors.

Experimental characterization of breakage rate of colloidal aggregates in axisymmetric extensional flow.

Aggregates prepared under fully destabilized conditions by the action of Brownian motion were exposed to an extensional flow generated at the entrance of a sudden contraction. Two noninvasive techniques were used to monitor their breakup process [i.e. light scattering and three-dimensional (3D) particle tracking velocimetry (3D-PTV)]. While the first one can be used to measure the size and the morphology of formed fragments after the breakage event, the latter is capable of resolving trajectories of individual aggregates up to the breakage point as well as the trajectories of formed fragments. Furthermore, measured velocity gradients were used to determine the local hydrodynamic conditions at the breakage point. All this information was combined to experimentally determine for the first time the breakage rate of individual aggregates, given in the form of a size reduction rate K(R), as a function of the applied strain rate, as well as the properties of the formed fragments (i.e., the number of formed fragments and the size ratio between the largest fragment and the original aggregate). It was found that K(R) scales with the applied strain rate according to a power law with the slope being dependent on the initial fractal dimension only, while the obtained data indicates a linear dependency of K(R) with the initial aggregate size. Furthermore, the probability distribution function (PDF) of the number of formed fragments and the PDF of the size ratio between the largest fragment and the original aggregate indicate that breakage will result with high probability (75%) in the formation of two to three fragments with a rather asymmetric ratio of sizes of about 0.8. The obtained results are well in agreement with the results from the numerical simulations published in the literature.

Exploration-exploitation model of moth-inspired olfactory navigation.

Navigation of male moths towards females during the mating search offers a unique perspective on the exploration-exploitation (EE) model in decision-making. This study uses the EE model to explain male moth pheromone-driven flight paths. Wind tunnel measurements and three-dimensional tracking using infrared cameras have been leveraged to gain insights into male moth behaviour. During the experiments in the wind tunnel, disturbance to the airflow has been added and the effect of increased fluctuations on moth flights has been analysed, in the context of the proposed EE model. The exploration and exploitation phases are separated using a genetic algorithm to the experimentally obtained dataset of moth three-dimensional trajectories. First, the exploration-to-exploitation rate (EER) increases with distance from the source of the female pheromone is demonstrated, which can be explained in the context of the EE model. Furthermore, our findings reveal a compelling relationship between EER and increased flow fluctuations near the pheromone source. Using an olfactory navigation simulation and our moth-inspired navigation model, the phenomenon where male moths exhibit an enhanced EER as turbulence levels increase is explained. This research extends our understanding of optimal navigation strategies based on general biological EE models and supports the development of bioinspired navigation algorithms.

The hydrodynamics of contact of a marine larva, Bugula neritina, with a cylinder.

Marine larvae are often considered as drifters that collide with larval collectors as passive particles. The trajectories of Bugula neritina larvae and of polystyrene beads were recorded in the velocity field of a vertical cylinder. The experiments illustrated that the trajectories of larvae and of beads may differ markedly. By considering a larva as a self-propelled mechanical microswimmer, a mathematical model of its motion in the two-dimensional velocity field of a long cylinder was formulated. Simulated larval trajectories were compared with experimental observations. We calculated the ratio η of the probability of contact of a microswimmer with a cylinder to the probability of contact of a passive particle with the cylinder. We found that depending on the ratio S of the swimming velocity of the microswimmer to the velocity of the ambient current, the probability of contact of a microswimmer with a collector may be orders of magnitude larger than the probability of contact of a passive particle with the cylinder: for S≈0.01, η≈1; for S≈0.1, η≈10; and for S≈1, η≈100.

A computational framework for physics-informed symbolic regression with straightforward integration of domain knowledge.

Discovering a meaningful symbolic expression that explains experimental data is a fundamental challenge in many scientific fields. We present a novel, open-source computational framework called Scientist-Machine Equation Detector (SciMED), which integrates scientific discipline wisdom in a scientist-in-the-loop approach, with state-of-the-art symbolic regression (SR) methods. SciMED combines a wrapper selection method, that is based on a genetic algorithm, with automatic machine learning and two levels of SR methods. We test SciMED on five configurations of a settling sphere, with and without aerodynamic non-linear drag force, and with excessive noise in the measurements. We show that SciMED is sufficiently robust to discover the correct physically meaningful symbolic expressions from the data, and demonstrate how the integration of domain knowledge enhances its performance. Our results indicate better performance on these tasks than the state-of-the-art SR software packages , even in cases where no knowledge is integrated. Moreover, we demonstrate how SciMED can alert the user about possible missing features, unlike the majority of current SR systems.

Effects of season, depth and pre-cultivation fertilizing on Ulva growth dynamics offshore the Eastern Mediterranean Sea.

Offshore macroalgae production could provide an alternative source of biomass for food, materials and energy. However, the offshore environment in general, specifically the Eastern Mediterranean Sea (EMS) offshore, is a high energy and low nutrients environment, thus challenging for macroalgae farming. In this study, we experimentally investigated the impact of season, depth, and pre-cultivation fertilization duration on the growth rates and chemical composition of offshore Ulva biomass, and developed a predictive model tailored to offshore conditions, capable of estimating both biomass growth rate and nitrogen content. Specifically, we measured Ulva biomass growth rate and internal nitrogen in the nitrogen-poor EMS a few kilometers offshore the Israeli coast at various depths and on-shore pre-cultivation fertilization schedules. Based on these data, we constructed a predictive cultivation model of Ulva offshore growth, which allows for the optimization of fertilization requirements for offshore cultivation. This study provides new insights on the effects of seasonality, depth, and pre-cultivation fertilization duration on growth rates and chemical composition of offshore Ulva sp. biomass production.

Estimation of coronary stenosis severity based on flow distribution ratios.

We suggest improving minimally-invasive stenosis severity estimation, using a combination of existing geometry-based methods with Transluminal Attenuation Gradient measurements. Instead of local flow values, the method uses flow distribution ratios along the entire tree. The tree geometry is used to derive a lumped model and predict the 'theoretical' ratios in each bifurcation, while attenuation measurements are used for extracting 'actual' ratios. The discrepancies between the measured and the theoretical values are utilized to assess a functional degree of stenosis. Our experimental and numerical analyses show that the quantitative value of discrepancy is proportional to stenosis severity, regardless of boundary conditions.

Aortic arch aneurysm repair - Unsteady hemodynamics and perfusion at different heart rates.

The aortic arch aneurysm is a complex disease that requires branching of one or more aortic arch vessels and can be fatal if left untreated. In this in vitro study, we examine the effect of the treatment approach on the unsteady hemodynamics and blood perfusion to the upper vessel's in models of an aortic arch aneurysm, and of the three common repair approaches: open-chest surgical repair, chimney, and hybrid approach. A particle image velocimetry method was used to quantify the unsteady hemodynamics in the four models simulated in a mock circulatory loop, to evaluate unsteady hemodynamic parameters and measure perfusion to the brain and the upper body. According to the findings, in terms of perfusion to the brain and upper body, the surgery model has the highest flow rate comparing to the other models in most heart-rate conditions. It also shows oscillatory parameters in the upper vessels which in normal arteries are correlated with a better arterial function. Between the two endovascular procedures, the hybrid model exhibits slightly better hemodynamic characteristics than the chimney model, with lower shear stresses and more oscillatory flow and WSS in the upper vessels. The hybrid model had lower perfusion flow rates to upper vessels during rest conditions (90BPM). However, unlike the other models, perfusion in the hybrid model increased with heart rate, thus at 135 BPM, it results in flow rate to upper vessels similar to that of the chimney model. The results of this study may shed light on future endograft' design and placement techniques.

Open-source computational simulation of moth-inspired navigation algorithm: A benchmark framework.

Olfactory navigation is defined as a task of a self-propelled navigator with some sensors capabilities to detect odor (or scalar concentration) convected and diffused in a windy environment. Known for their expertise in locating an odor source, male moths feature a bio-inspirational model of olfactory navigation using chemosensory. Many studies have developed moths-inspired algorithms based on proposed strategies of odor-sourcing. However, comparing among various bio-inspired strategies is challenging, due to the lack of a componential framework that allows statistical comparison of their performances, in a controlled environment. This work aims at closing this gap, using an open source, freely accessible simulation framework. To demonstrate the applicability of our simulated framework as a benchmarking tool, we implemented two different moth-inspired navigation strategies; for each strategy, specific modifications in the navigation module were carried out, resulting in four different navigation models. We tested the performance of moth-like navigators of these models through various wind and odor spread parameters in a virtual turbulent environment. The performance of the navigators was comprehensively analyzed using bio-statistical tests. This benchmark-ready simulation framework could be useful for the biology-oriented, as well as engineering-oriented studies, assisting in deducing the evolutionary efficient strategies and improving self-propelled autonomous systems in complex environments.•The open-source framework `Mothpy' provides a computational platform that simulates the behavior of moth-like navigators, using two main inputs to be modified by the user: (1) flow condition; and (2) navigation strategy.•`Mothpy' can be used as a benchmarking platform to compare the performance of multiple moth-like navigators, under various physical environments, and different searching strategies.•Method name: Mothpy 0.0.1' - an open-source moth-inspired navigator simulator.

Hemodynamic effects of aortic valve and heart rate on coronary perfusion.

BACKGROUND: Reduced coronary flow reserve in aortic stenosis and after transcatheter aortic valve implantation is usually attributed to physiological factors taking place during systole, such as an increase in coronary resistance, and backward waves intensity. In this paper, we suggest an additional factor related to the diastolic hemodynamics in the aortic root. METHODS: We measured left ventricle, aortic and coronary pressure and coronary perfusion in in-vitro models of healthy, aortic stenosis and an artificial valve at different heart rates and cardiac output conditions, to isolate the effect of hemodynamic factors in the aortic root during diastole. FINDINGS: Our results show that during diastole, coronary perfusion depends on the pressure gradient between the aorta and the coronary inlet. This aorta-coronary pressure gradient is influenced by the hemodynamic flow field in the aortic root. The ratio between the aorta-coronary pressure gradient magnitude in stress to that under rest conditions of a healthy model is ten times higher than the same ratio in the aortic stenosis model and twice higher as compared to the artificial valve model result. The coronary flow reserve of the healthy model is correspondingly higher compared to the artificial valve and the aortic stenosis models. These results are in agreement with the clinical evidence. INTERPRETATION: This study supports the hypothesis of a hemodynamic mechanism in the aortic root that increases coronary flow during rest but reduces the coronary flow reserve in aortic stenosis and artificial valve cases. The results may provide valuable insights regarding valve design.

Extended 3D-PTV for direct measurements of Lagrangian statistics of canopy turbulence in a wind tunnel.

Direct estimation of Lagrangian turbulence statistics is essential for the proper modeling of dispersion and transport in highly obstructed canopy flows. However, Lagrangian flow measurements demand very high rates of data acquisition, resulting in bottlenecks that prevented the estimation of Lagrangian statistics in canopy flows hitherto. We report on a new extension to the 3D Particle Tracking Velocimetry (3D-PTV) method, featuring real-time particle segmentation that outputs centroids and sizes of tracer particles and performed on dedicated hardware during high-speed digital video acquisition from multiple cameras. The proposed extension results in four orders of magnitude reduction in data transfer rate that enables to perform substantially longer experimental runs, facilitating measurements of convergent statistics. The extended method is demonstrated through an experimental wind tunnel investigation of the Lagrangian statistics in a heterogeneous canopy flow. We observe that acceleration statistics are affected by the mean shear at the top of the canopy layer and that Lagrangian particle dispersion at small scales is dominated by turbulence in the wake of the roughness elements. This approach enables to overcome major shortcomings from Eulerian-based measurements which rely on assumptions such as the Taylor's frozen turbulence hypothesis, which is known to fail in highly turbulent flows.

Assessing the Influence of Irrigation Flows on Clearance of Calculi Fragments During Percutaneous Nephrolithotomy: A Numerical and Physical Model Study.

OBJECTIVE: To analyze the intrarenal hydrodynamic processes and clearance of stone fragments during percutaneous nephrolithotomy (PCNL) using numerical and physical models. MATERIALS AND METHODS: COMSOL multiphysics software was used to simulate irrigation flows and transport of particles in a kidney model based on computerized tomographic acquisition. A similarly shaped physical model with solid particles was constructed, and PCNL was simulated using nephroscopes. The particles were tracked by a digital camera. Particle clearance in both models was compared at various flow velocities and angles. RESULTS: The numerical model predicted a significantly increased particle clearance with high-velocity irrigation (0.25 vs 1 m/s, 12% vs 70%, respectively: P < .0001), as did the perpendicular positioning of the instrument (45° vs 90°, 1% vs 70%: P < .0001). These results were validated in the physical model with a correlation of r = 0.98. Particle clearance occurred only in the directly irrigated calyx. The flow and the particle movements in the other calices were negligible. The calculated intrarenal pressure at the maximal velocity reached 15.6 cmH2O. CONCLUSION: Effective clearance of particles is achieved when irrigation is perpendicularly directed to the targeted calyx and enhanced by higher flow velocities. The flow in calyces that are not directly irrigated is ineffectual, and high flows do not significantly increase the intrarenal pressure. Validation of the numerical model by the physical model supports the use of computerized methods for advanced renal hydrodynamic research that may replace the need of some animal and human studies on the clearance of stones during PCNL.

A numerical study of the hemodynamic effect of the aortic valve on coronary flow.

During diastole, coronary perfusion depends on the pressure drop between the myocardial tissue and the coronary origin located at the aortic root. This pressure difference is influenced by the flow field near the closing valve leaflets. Clinical evidence is conclusive that patients with severe aortic stenosis (AS) suffer from diastolic dysfunction during hyperemia, but show increased coronary blood flow (CBF) during rest. Transcatheter aortic valve implantation (TAVI) was shown to decrease rest CBF along with its main purpose of improving the aortic flow and reducing the risk of heart failure. Physiological or pathological factors do not provide a clear explanation for the increase in rest CBF due to AS and its decrease immediately after TAVI. In this manuscript, we present a numerical study that examines the impact of AS and TAVI on CBF during rest conditions. The study compares the hemodynamics of five different 2D numerical models: a baseline "healthy valve" case, two AS cases and two TAVI cases. The analysis used time-dependent computational fluid-structure interaction simulations of blood flow in the aortic root including the dynamics of the flexible valve leaflets and the varying resistance of the coronary arteries. Despite its simplifications, our 2D model succeeded to capture the major effects that dominate the hemodynamics in the aortic root and to explain the hemodynamic effect that leads to the changes in CBF found in in vitro and clinical studies.

Three-dimensional Particle Tracking Velocimetry for Turbulence Applications: Case of a Jet Flow.

3D-PTV is a quantitative flow measurement technique that aims to track the Lagrangian paths of a set of particles in three dimensions using stereoscopic recording of image sequences. The basic components, features, constraints and optimization tips of a 3D-PTV topology consisting of a high-speed camera with a four-view splitter are described and discussed in this article. The technique is applied to the intermediate flow field (5

Background oriented schlieren in a density stratified fluid.

Non-intrusive quantitative fluid density measurement methods are essential in the stratified flow experiments. Digital imaging leads to synthetic schlieren methods in which the variations of the index of refraction are reconstructed computationally. In this study, an extension to one of these methods, called background oriented schlieren, is proposed. The extension enables an accurate reconstruction of the density field in stratified liquid experiments. Typically, the experiments are performed by the light source, background pattern, and the camera positioned on the opposite sides of a transparent vessel. The multimedia imaging through air-glass-water-glass-air leads to an additional aberration that destroys the reconstruction. A two-step calibration and image remapping transform are the key components that correct the images through the stratified media and provide a non-intrusive full-field density measurements of transparent liquids.

Statistical conservation law in two- and three-dimensional turbulent flows.

Particles in turbulence live complicated lives. It is nonetheless sometimes possible to find order in this complexity. It was proposed in Falkovich et al. [Phys. Rev. Lett. 110, 214502 (2013)] that pairs of Lagrangian tracers at small scales, in an incompressible isotropic turbulent flow, have a statistical conservation law. More specifically, in a d-dimensional flow the distance R(t) between two neutrally buoyant particles, raised to the power -d and averaged over velocity realizations, remains at all times equal to the initial, fixed, separation raised to the same power. In this work we present evidence from direct numerical simulations of two- and three-dimensional turbulence for this conservation. In both cases the conservation is lost when particles exit the linear flow regime. In two dimensions we show that, as an extension of the conservation law, an Evans-Cohen-Morriss or Gallavotti-Cohen type fluctuation relation exists. We also analyze data from a 3D laboratory experiment [Liberzon et al., Physica D 241, 208 (2012)], finding that although it probes small scales they are not in the smooth regime. Thus instead of 〈R-3〉, we look for a similar, power-law-in-separation conservation law. We show that the existence of an initially slowly varying function of this form can be predicted but that it does not turn into a conservation law. We suggest that the conservation of 〈R-d〉, demonstrated here, can be used as a check of isotropy, incompressibility, and flow dimensionality in numerical and laboratory experiments that focus on small scales.