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1.
Apoptosis ; 29(3-4): 393-411, 2024 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-37950848

RESUMEN

Identification of molecular biomarkers associated with neutrophilic asthma (NA) phenotype may inform the discovery of novel pathobiological mechanisms and the development of diagnostic markers. Three mRNA transcriptome datasets extracted from induced sputum of asthma patients with various inflammatory types were used to screen for macrophage-related molecular mechanisms and targets in NA. Furthermore, the predicted targets were also validated on an independent dataset (N = 3) and animal model (N = 5). A significant increase in total cells, neutrophils and macrophages was observed in bronchoalveolar lavage (BAL) fluid of NA mice induced by ovalbumin/freund's adjuvant, complete (OVA/CFA). And we also found elevated levels of neutrophil and macrophage infiltration in NA subtype in external datasets. NA mice had increased secretion of IgE, IL-1ß, TNF-α and IL-6 in serum and BAL fluid. MPO, an enzyme present in neutrophils, was also highly expressed in NA mice. Then, weighted gene co-expression network analysis (WGCNA) identified 684 targets with the strongest correlation with NA, and we obtained 609 macrophage-related specific differentially expressed genes (DEGs) in NA by integrating macrophage-related genes. The top 10 genes with high degree values were obtained and their mRNA levels and diagnostic performance were then determined by RT-qPCR and receiver operator characteristic (ROC) analysis. Statistically significant correlations were found between macrophages and all key targets, with the strongest correlation between ITGAM and macrophages in NA. Double-Immunofluorescence staining further confirmed the co-localization of ITGAM and F4/80 in NA. ITGAM was identified as a critical target to distinguish NA from healthy/non-NA individuals, which may provide a novel avenue to further uncover the mechanisms and therapy of NA.


Asunto(s)
Apoptosis , Asma , Humanos , Animales , Ratones , Asma/tratamiento farmacológico , Asma/genética , Asma/inducido químicamente , Neutrófilos , Macrófagos , ARN Mensajero/genética , Antígeno CD11b
2.
Proc Natl Acad Sci U S A ; 110(16): 6459-64, 2013 Apr 16.
Artículo en Inglés | MEDLINE | ID: mdl-23553835

RESUMEN

Retinoic acid inducible gene I (RIG-I) senses viral RNAs and triggers innate antiviral responses through induction of type I IFNs and inflammatory cytokines. However, whether RIG-I interacts with host cellular RNA remains undetermined. Here we report that Rig-I interacts with multiple cellular mRNAs, especially Nf-κb1. Rig-I is required for NF-κB activity via regulating Nf-κb1 expression at posttranscriptional levels. It interacts with the multiple binding sites within 3'-UTR of Nf-κb1 mRNA. Further analyses reveal that three distinct tandem motifs enriched in the 3'-UTR fragments can be recognized by Rig-I. The 3'-UTR binding with Rig-I plays a critical role in normal translation of Nf-κb1 by recruiting the ribosomal proteins [ribosomal protein L13 (Rpl13) and Rpl8] and rRNAs (18S and 28S). Down-regulation of Rig-I or Rpl13 significantly reduces Nf-κb1 and 3'-UTR-mediated luciferase expression levels. These findings indicate that Rig-I functions as a positive regulator for NF-κB signaling and is involved in multiple biological processes in addition to host antivirus immunity.


Asunto(s)
ARN Helicasas DEAD-box/metabolismo , Regulación de la Expresión Génica/fisiología , FN-kappa B/metabolismo , ARN Mensajero/metabolismo , Regiones no Traducidas 3'/genética , Animales , Northern Blotting , Western Blotting , Proteína 58 DEAD Box , ARN Helicasas DEAD-box/genética , Técnica del Anticuerpo Fluorescente , Inmunoprecipitación , Luciferasas , Ratones , Ratones Noqueados , Análisis por Micromatrices , Simulación de Dinámica Molecular , FN-kappa B/genética , Interferencia de ARN , ARN Mensajero/genética , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa , Proteínas Ribosómicas/metabolismo
3.
J Biol Chem ; 288(13): 9165-76, 2013 Mar 29.
Artículo en Inglés | MEDLINE | ID: mdl-23386620

RESUMEN

Heat shock factor 1 (HSF1), a master regulator of heat shock responses, plays an important role in tumorigenesis. In this study we demonstrated that HSF1 is required for chemotherapeutic agent-induced cytoprotective autophagy through transcriptional up-regulation of autophagy-related gene ATG7. Interestingly, this is independent of the HSF1 heat shock response function. Treatment of cancer cells with the FDA-approved chemotherapeutic agent carboplatin induced autophagy and growth inhibition, which were significantly increased upon knockdown of HSF1. Mechanistic studies revealed that HSF1 regulates autophagy by directly binding to ATG7 promoter and transcriptionally up-regulating its expression. Significantly, breast cancer patient sample study revealed that a higher ATG7 expression level is associated with poor patient survival. This novel finding was further confirmed by analysis of two independent patient databases, demonstrating a prognostic value of ATG7. Furthermore, a strong positive correlation was observed between levels of HSF1 and ATG7 in triple-negative breast cancer patient samples, thus validating our in vitro findings. This is the first study identifying a critical role for HSF1 in controlling cytoprotective autophagy through regulation of ATG7, which is distinct from the HSF1 function in the heat shock response. This is also the first study demonstrating a prognostic value of ATG7 in breast cancer patients. These findings strongly argue that combining chemotherapeutic agents with autophagy inhibition by repressing HSF1/ATG7 axis represents a promising strategy for future cancer treatment.


Asunto(s)
Autofagia , Neoplasias de la Mama/tratamiento farmacológico , Neoplasias de la Mama/metabolismo , Proteínas de Unión al ADN/metabolismo , Regulación de la Expresión Génica , Factores de Transcripción/metabolismo , Enzimas Activadoras de Ubiquitina/metabolismo , Proteína 7 Relacionada con la Autofagia , Carboplatino/farmacología , Línea Celular Tumoral , Resistencia a Antineoplásicos , Femenino , Citometría de Flujo/métodos , Factores de Transcripción del Choque Térmico , Humanos , Luciferasas/metabolismo , Microscopía Fluorescente/métodos , Pronóstico , ARN Interferente Pequeño/metabolismo , Transcripción Genética
4.
J Biol Chem ; 288(6): 4334-45, 2013 Feb 08.
Artículo en Inglés | MEDLINE | ID: mdl-23255607

RESUMEN

Chemoresistance is a major obstacle in cancer treatment. Our previous studies have shown that miR-125b plays an important role in chemoresistance. Here we report a novel mechanism that up-regulation of miR-125b through Wnt signaling by Snail enriches cancer stem cells. Overexpression of Snail dramatically increases the expression of miR-125b through the Snail-activated Wnt/ß-catenin/TCF4 axis. Snail confers chemoresistance by repressing Bak1 through up-regulation of miR-125b. Restoring the expression of Bak1 or depleting miR-125b re-sensitizes Snail-expressing cancer cells to Taxol, indicating that miR-125b is critical in Snail-induced chemoresistance. Moreover, overexpression of miR-125b significantly increases the cancer stem cell population (CD24-CD44+), while depletion of miR-125b or rescue of the expression of Bak1 increases the non-stem cell population (CD24+CD44+) in Snail-overexpressing cells. These findings strongly support that miR-125b functions as a key mediator in Snail-induced cancer stem cell enrichment and chemoresistance. This novel mechanism for Snail-induced stem cell propagation and chemoresistance may have important implications in the development of strategies for overcoming cancer cell resistance to chemotherapy.


Asunto(s)
Resistencia a Antineoplásicos , MicroARNs/biosíntesis , Proteínas de Neoplasias/metabolismo , Neoplasias/metabolismo , Células Madre Neoplásicas/metabolismo , ARN Neoplásico/biosíntesis , Factores de Transcripción/metabolismo , Antineoplásicos Fitogénicos/farmacología , Factores de Transcripción Básicos con Cremalleras de Leucinas y Motivos Hélice-Asa-Hélice/genética , Factores de Transcripción Básicos con Cremalleras de Leucinas y Motivos Hélice-Asa-Hélice/metabolismo , Línea Celular Tumoral , Humanos , MicroARNs/genética , Proteínas de Neoplasias/genética , Neoplasias/tratamiento farmacológico , Neoplasias/genética , Neoplasias/patología , Células Madre Neoplásicas/patología , Paclitaxel/farmacología , ARN Neoplásico/genética , Factores de Transcripción de la Familia Snail , Factor de Transcripción 4 , Factores de Transcripción/genética , Proteínas Wnt/genética , Proteínas Wnt/metabolismo , Proteína Destructora del Antagonista Homólogo bcl-2/genética , Proteína Destructora del Antagonista Homólogo bcl-2/metabolismo , beta Catenina/genética , beta Catenina/metabolismo
5.
bioRxiv ; 2024 May 28.
Artículo en Inglés | MEDLINE | ID: mdl-38854075

RESUMEN

Animal venoms, distinguished by their unique structural features and potent bioactivities, represent a vast and relatively untapped reservoir of therapeutic molecules. However, limitations associated with extracting or expressing large numbers of individual venoms and venom-like molecules have precluded their therapeutic evaluation via high throughput screening. Here, we developed an innovative computational approach to design a highly diverse library of animal venoms and "metavenoms". We employed programmable M13 hyperphage display to preserve critical disulfide-bonded structures for highly parallelized single-round biopanning with quantitation via high-throughput DNA sequencing. Our approach led to the discovery of Kunitz type domain containing proteins that target the human itch receptor Mas-related G protein-coupled receptor X4 (MRGPRX4), which plays a crucial role in itch perception. Deep learning-based structural homology mining identified two endogenous human homologs, tissue factor pathway inhibitor (TFPI) and serine peptidase inhibitor, Kunitz type 2 (SPINT2), which exhibit agonist-dependent potentiation of MRGPRX4. Highly multiplexed screening of animal venoms and metavenoms is therefore a promising approach to uncover new drug candidates.

6.
Sci Total Environ ; 857(Pt 1): 159299, 2023 Jan 20.
Artículo en Inglés | MEDLINE | ID: mdl-36216059

RESUMEN

Policy is a powerful tool determining solid-waste treatment and disposal. In 2019, China carried out the "garbage-classification policy" in 46 cities. So-called dry garbage is then separated from municipal solid waste and treated alone by incineration. This work investigated the influence of the policy on contents and leaching characterizations of municipal solid waste incineration fly ash. Median value of Cl was significantly increased from 17.43 wt% to 28.63 wt%. Median content of CaO maintained a similar value (51.21 wt% and 47.27 wt%). Ten year ago, CaClOH was not generally observed in fly ash. However, this phase was widely detected nowadays. Median value of heavy-metal (Zn, Pb, Cu, Cd, Cr, and Ni) was decreased from 9007.69 mg/kg to 7652.72 mg/kg. Thus, the policy also positively affected hazardous-waste collection. Heavy-metal leaching concentrations were decreased and chemical speciation became more stable because CaClOH supplied more alkalinity and binding ability for heavy metals. Therefore, fly-ash treatment technologies and their running parameters should be regulated to adapt above new characterizations after the garbage-classification policy.


Asunto(s)
Metales Pesados , Eliminación de Residuos , Ceniza del Carbón , Residuos Sólidos/análisis , Incineración , Metales Pesados/análisis , Políticas , Carbono/química , Material Particulado
7.
Nat Struct Mol Biol ; 14(8): 716-20, 2007 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-17643121

RESUMEN

Breast cancer-1 (BRCA1) participates in the DNA damage response. However, the mechanism by which BRCA1 is recruited to DNA damage sites remains elusive. Recently, we have demonstrated that a ubiquitin-binding protein, RAP80, is required for DNA damage-induced BRCA1 translocation. Here we identify another component, CCDC98, in the BRCA1-RAP80 complex. CCDC98 mediates BRCA1's association with RAP80. Moreover, CCDC98 controls both DNA damage-induced formation of BRCA1 foci and BRCA1-dependent G2/M checkpoint activation. Together, our results demonstrate that CCDC98 is a BRCA1 binding partner that mediates BRCA1 function in response to DNA damage.


Asunto(s)
Proteína BRCA1/metabolismo , Proteínas Portadoras/fisiología , Daño del ADN , Proteínas Portadoras/química , Proteínas Portadoras/metabolismo , Ciclo Celular/fisiología , Línea Celular , Reparación del ADN , Proteínas de Unión al ADN , Chaperonas de Histonas , Humanos , Proteínas Nucleares/metabolismo , Mapeo de Interacción de Proteínas , Estructura Terciaria de Proteína , Transporte de Proteínas , Transducción de Señal
8.
Front Genet ; 13: 1054132, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-36726719

RESUMEN

Observational studies have suggested a positive association between gastroesophageal reflux disease and lung cancer, but due to the existence of confounders, it remains undetermined whether gastroesophageal reflux disease (GERD) has a causal association with lung cancer. Therefore, Mendelian randomization (MR) analyses were applied to investigate the relationship between the two conditions. Two-sample Mendelian randomization analysis was utilized with summary genetic data from the European Bioinformatics Institute (602,604 individuals) and International Lung Cancer Consortium, which provides information on lung cancer and its histological subgroups. Furthermore, we used two-step Mendelian randomization and multivariable Mendelian randomization to estimate whether smoking initiation (311,629 cases and 321,173 controls) and alcohol intake frequency (n = 462,346) mediate any effect of gastroesophageal reflux disease on lung cancer risk. The Mendelian randomization analyses indicated that gastroesophageal reflux disease was associated with and significantly increased the risk of lung cancer (ORIVW = 1.35, 95% CI = 1.18-1.54; p = 1.36 × 10-5). Smoking initiation and alcohol intake frequency mediated 35% and 3% of the total effect of gastroesophageal reflux disease on lung cancer, respectively. The combined effect of these two factors accounted for 60% of the total effect. In conclusion, gastroesophageal reflux disease is associated with an increased risk of lung cancer, and interventions to reduce smoking and alcohol intake may reduce the incidence of lung cancer.

9.
J Biol Chem ; 285(28): 21496-507, 2010 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-20460378

RESUMEN

Paclitaxel (Taxol) is an effective chemotherapeutic agent for treatment of cancer patients. Despite impressive initial clinical responses, the majority of patients eventually develop some degree of resistance to Taxol-based therapy. The mechanisms underlying cancer cells resistance to Taxol are not fully understood. MicroRNA (miRNA) has emerged to play important roles in tumorigenesis and drug resistance. However, the interaction between the development of Taxol resistance and miRNA has not been previously explored. In this study we utilized a miRNA array to compare the differentially expressed miRNAs in Taxol-resistant and their Taxol-sensitive parental cells. We verified that miR-125b, miR-221, miR-222, and miR-923 were up-regulated in Taxol-resistant cancer cells by real-time PCR. We further investigated the role and mechanisms of miR-125b in Taxol resistance. We found that miR-125b was up-regulated in Taxol-resistant cells, causing a marked inhibition of Taxol-induced cytotoxicity and apoptosis and a subsequent increase in the resistance to Taxol in cancer cells. Moreover, we demonstrated that the pro-apoptotic Bcl-2 antagonist killer 1 (Bak1) is a direct target of miR-125b. Down-regulation of Bak1 suppressed Taxol-induced apoptosis and led to an increased resistance to Taxol. Restoring Bak1 expression by either miR-125b inhibitor or re-expression of Bak1 in miR-125b-overexpressing cells recovered Taxol sensitivity, overcoming miR-125-mediated Taxol resistance. Taken together, our data strongly support a central role for miR-125b in conferring Taxol resistance through the suppression of Bak1 expression. This finding has important implications in the development of targeted therapeutics for overcoming Taxol resistance in a number of different tumor histologies.


Asunto(s)
Antineoplásicos/farmacología , Neoplasias de la Mama/genética , Neoplasias de la Mama/metabolismo , Resistencia a Antineoplásicos , Regulación Neoplásica de la Expresión Génica , MicroARNs/metabolismo , Paclitaxel/farmacología , Proteínas Proto-Oncogénicas c-bcl-2/metabolismo , Proteína Destructora del Antagonista Homólogo bcl-2/metabolismo , Apoptosis , Neoplasias de la Mama/tratamiento farmacológico , Línea Celular Tumoral , Supervivencia Celular , Humanos , Análisis de Secuencia por Matrices de Oligonucleótidos , Reacción en Cadena de la Polimerasa de Transcriptasa Inversa
10.
Environ Sci Pollut Res Int ; 28(1): 133-155, 2021 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-33063214

RESUMEN

With the development of industry, sustainable use of natural resources has become a worldwide hot topic. Heavy metal-containing sludge (HMS) is a hazardous waste after wastewater treatment. At present, HMS is still treated by landfill or landfill after incineration. Considering the components, HMS usually contains various heavy metals and organic compounds, which is potentially used as a raw resource for catalyst production. This review thus concludes recent reports and developments in this field. First, basic technologies are summarized as component regulation, precursor formation, and structure transformations. Second, prepared materials are applied in various catalytic fields, such as gas purification, photocatalysis, electrocatalysis, and Fenton catalysis. During these processes, key factors are multi-metallic components, metal doping, temperature, and pH. They not only influence the formation of HMS-derived catalyst but also the catalytic activity. Furthermore, catalytic activities of HMS-derived catalysts are compared with those synthesized by pure reagents. An assessment and accounting are also supplied if raw resources are substituted by HMS. Finally, in order to apply HMS in a real application, more works must be devoted to the influence of trace metal doping on catalytic activities and stabilities. Besides, more pilot experiments are urgently necessary.


Asunto(s)
Metales Pesados , Aguas del Alcantarillado , Incineración , Temperatura
11.
Phys Rev E ; 103(3-1): 033104, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-33862812

RESUMEN

Acousotophoretic particle separations in counterpropagating surface acoustic wave (SAW) fields, e.g., standing SAWs (SSAWs), phase modulated SSAWs, tilted angle SSAWs, and partial standing SAWs, have proven successful. But there still lacks analytical tools for predicting the particle trajectory and optimizing the device designs. Here, we study the acoustophoresis of spherical Rayleigh particles in counterpropagating SAW fields and find that particle motions can be characterized into two distinct modes, the drift mode and the locked mode. Through theoretical studies, we provide analytical expressions of particle trajectories in different fields and different moving patterns. Based on these, we obtain theory-based protocols for designing such SAW acoustofluidic particle separation chips, which are demonstrated through finite-element simulations. The results here provide theoretical guidelines for designing high throughput and high efficiency particle separation devices.

12.
Mol Cancer ; 9: 33, 2010 Feb 09.
Artículo en Inglés | MEDLINE | ID: mdl-20144215

RESUMEN

BACKGROUND: Taxol is one of the most effective chemotherapeutic agents for the treatment of patients with breast cancer. Despite impressive clinical responses initially, the majority of patients eventually develop resistance to Taxol. Lactate dehydrogenase-A (LDH-A) is one of the predominant isoforms of LDH expressed in breast tissue, which controls the conversion of pyruvate to lactate and plays an important role in glucose metabolism. In this study we investigated the role of LDH-A in mediating Taxol resistance in human breast cancer cells. RESULTS: Taxol-resistant subclones, derived from the cancer cell line MDA-MB-435, sustained continuous growth in high concentrations of Taxol while the Taxol-sensitive cells could not. The increased expression and activity of LDH-A were detected in Taxol-resistant cells when compared with their parental cells. The downregulation of LDH-A by siRNA significantly increased the sensitivity of Taxol-resistant cells to Taxol. A higher sensitivity to the specific LDH inhibitor, oxamate, was found in the Taxol-resistant cells. Furthermore, treating cells with the combination of Taxol and oxamate showed a synergistical inhibitory effect on Taxol-resistant breast cancer cells by promoting apoptosis in these cells. CONCLUSION: LDH-A plays an important role in Taxol resistance and inhibition of LDH-A re-sensitizes Taxol-resistant cells to Taxol. This supports that Warburg effect is a property of Taxol resistant cancer cells and may play an important role in the development of Taxol resistance. To our knowledge, this is the first report showing that the increased expression of LDH-A plays an important role in Taxol resistance of human breast cancer cells. This study provides valuable information for the future development and use of targeted therapies, such as oxamate, for the treatment of patients with Taxol-resistant breast cancer.


Asunto(s)
Resistencia a Antineoplásicos/efectos de los fármacos , Glucólisis/efectos de los fármacos , L-Lactato Deshidrogenasa/metabolismo , Paclitaxel/farmacología , Neoplasias de la Mama/patología , Línea Celular Tumoral , Regulación hacia Abajo/efectos de los fármacos , Ensayos de Selección de Medicamentos Antitumorales , Sinergismo Farmacológico , Femenino , Técnicas de Silenciamiento del Gen , Humanos , Isoenzimas/metabolismo , Lactato Deshidrogenasa 5
13.
Chemosphere ; 255: 126910, 2020 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-32402874

RESUMEN

In particulate matter, organic precursors generate environmentally persistent free radicals (EPFRs) on metal oxides and attract worldwide attentions in health risk assessment and environmental protection. For the first time, we determined characteristics and formation processes of EPFRs evolved from different organic precursors on PbO particulate. As a result, phenol resulted in phenoxyl radical at 230 °C by releasing one H atom. One Cl atom was eliminated from monochlorobenzene and 1,2-dichlorobenzene, producing phenyl and chlorobenzene radicals, respectively. The decays of these radicals had an order of chlorobenzene radical (4 d) > phenyl radical (3 d) > phenoxyl radical (2 d). Density functional theory calculations indicated that the long decay of chlorobenzene radical was contributed to the high adsorption energy of 1,2-dichlorobenzene on PbO particulate. Furthermore, chlorobenzene radical produced more reactive oxygen species than the other two radicals in oxidative-stress investigations. Therefore, 1,2-dichlorobenzene creates more persistent EPFR, which will cause more dangerous health impact. The main results of this article provide a new insight into the health risk assessment of organic and oxide-containing particulate matter.


Asunto(s)
Contaminantes Atmosféricos/análisis , Teoría Funcional de la Densidad , Material Particulado/análisis , Adsorción , Clorobencenos , Carbón Mineral , Polvo , Monitoreo del Ambiente , Radicales Libres/análisis , Minerales , Óxidos , Fenol , Especies Reactivas de Oxígeno
14.
Oncogene ; 38(1): 88-102, 2019 01.
Artículo en Inglés | MEDLINE | ID: mdl-30082909

RESUMEN

B7-H3 is a tumor-promoting glycoprotein that is expressed at low levels in most normal tissues, but is overexpressed in various human cancers which is associated with disease progression and poor patient outcome. Although numerous publications have reported the correlation between B7-H3 and cancer progression in many types of cancers, mechanistic studies on how B7-H3 regulates cancer malignancy are rare, and the mechanisms underlying the role of B7-H3 in drug resistance are almost unknown. Here we report a novel finding that upregulation of B7-H3 increases the breast cancer stem cell population and promotes cancer development. Depletion of B7-H3 in breast cancer significantly inhibits the cancer stem cells. By immunoprecipitation and mass spectrometry, we found that B7-H3 is associated with the major vault protein (MVP) and activates MEK through MVP-enhancing B-RAF and MEK interaction. B7-H3 expression increases stem cell population by binding to MVP which regulates the activation of the MAPK kinase pathway. Depletion of MVP blocks the activation of MEK induced by B7-H3 and dramatically inhibits B7-H3 induced stem cells. This study reports novel functions of B7-H3 in regulating breast cancer stem cell enrichment. The novel mechanism for B7-H3-induced stem cell propagation by regulating MVP/MEK signaling axis independent of the classic Ras pathway may have important implications in the development of strategies for overcoming cancer cell resistance to chemotherapy.


Asunto(s)
Antígenos B7/fisiología , Neoplasias de la Mama/metabolismo , Resistencia a Antineoplásicos/fisiología , Quinasas Quinasa Quinasa PAM/fisiología , Proteínas de Neoplasias/fisiología , Células Madre Neoplásicas/metabolismo , Partículas Ribonucleoproteicas en Bóveda/fisiología , Animales , Antígenos B7/antagonistas & inhibidores , Antígenos B7/química , Antígenos B7/genética , Neoplasias de la Mama/patología , Butadienos/farmacología , Butadienos/uso terapéutico , Sistemas CRISPR-Cas , Línea Celular Tumoral , Polaridad Celular , Activación Enzimática , Femenino , Humanos , Quinasas Quinasa Quinasa PAM/antagonistas & inhibidores , Ratones , Ratones Desnudos , Proteína Homeótica Nanog/biosíntesis , Proteína Homeótica Nanog/genética , Invasividad Neoplásica , Proteínas de Neoplasias/antagonistas & inhibidores , Proteínas de Neoplasias/genética , Nitrilos/farmacología , Nitrilos/uso terapéutico , Dominios Proteicos , Mapeo de Interacción de Proteínas , Inhibidores de Proteínas Quinasas/farmacología , Inhibidores de Proteínas Quinasas/uso terapéutico , Proteínas Proto-Oncogénicas B-raf/metabolismo , Interferencia de ARN , ARN Guía de Kinetoplastida/genética , ARN Interferente Pequeño/farmacología , Proteínas Recombinantes/metabolismo , Factores de Transcripción SOXB1/biosíntesis , Factores de Transcripción SOXB1/genética , Eliminación de Secuencia , Esferoides Celulares , Transfección , Regulación hacia Arriba
15.
Oncotarget ; 7(48): 78667-78679, 2016 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-27637078

RESUMEN

T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive hematopoietic malignancy. Although it has been reported that overexpression of miR-125b leads to T-ALL development, the underlying mechanisms of miR-125b action are still unclear. The goal of this study is to delineate the role of miR-125b in T-ALL development. We found that miR-125b is highly expressed in undifferentiated leukemic T cells (CD4-negative) while its expression is low in differentiated T cells (CD4-positive). Overexpression of miR-125b increased the CD4-negative population in T cells, whereas depletion of miR-125b by miR-125b-sponge decreased the CD4-negative cell population. We identified that A20 (TNFAIP3) is a direct target of miR-125b in T cells. Overexpression of miR-125b also increased glucose uptake and oxygen consumption in T cells through targeting A20. Furthermore, restoration of A20 in miR-125b-overexpressing cells decreased the CD4-negative population in T cell leukemia, and decreased glucose uptake and oxygen consumption to the basal level of T cells transfected with vector. In conclusion, our data demonstrate that miR-125b regulates differentiation and reprogramming of T cell glucose metabolism via targeting A20. Since both de-differentiation and dysregulated glucose metabolism contribute to the development of T-cell leukemia, these findings provide novel insights into the understanding and treatment of T-ALL.


Asunto(s)
Linfocitos T CD4-Positivos/metabolismo , Diferenciación Celular , Reprogramación Celular , Metabolismo Energético , MicroARNs/metabolismo , Leucemia-Linfoma Linfoblástico de Células T Precursoras/metabolismo , Proteína 3 Inducida por el Factor de Necrosis Tumoral alfa/metabolismo , Linfocitos T CD4-Positivos/patología , Regulación Leucémica de la Expresión Génica , Glucosa/metabolismo , Humanos , Células Jurkat , MicroARNs/genética , Consumo de Oxígeno , Leucemia-Linfoma Linfoblástico de Células T Precursoras/genética , Leucemia-Linfoma Linfoblástico de Células T Precursoras/patología , Transducción de Señal , Transfección , Proteína 3 Inducida por el Factor de Necrosis Tumoral alfa/genética
16.
Cancer Res ; 76(8): 2231-42, 2016 04 15.
Artículo en Inglés | MEDLINE | ID: mdl-27197253

RESUMEN

B7-H3 is a member of B7 family of immunoregulatory transmembrane glycoproteins expressed by T cells. While B7-H3 overexpression is associated with poor outcomes in multiple cancers, it also has immune-independent roles outside T cells and its precise mechanistic contributions to cancer are unclear. In this study, we investigated the role of B7-H3 in metabolic reprogramming of cancer cells in vitro and in vivo We found that B7-H3 promoted the Warburg effect, evidenced by increased glucose uptake and lactate production in B7-H3-expressing cells. B7-H3 also increased the protein levels of HIF1α and its downstream targets, LDHA and PDK1, key enzymes in the glycolytic pathway. Furthermore, B7-H3 promoted reactive oxygen species-dependent stabilization of HIF1α by suppressing the activity of the stress-activated transcription factor Nrf2 and its target genes, including the antioxidants SOD1, SOD2, and PRX3. Metabolic imaging of human breast cancer xenografts in mice confirmed that B7-H3 enhanced tumor glucose uptake and tumor growth. Together, our results illuminate the critical immune-independent contributions of B7-H3 to cancer metabolism, presenting a radically new perspective on B7 family immunoregulatory proteins in malignant progression. Cancer Res; 76(8); 2231-42. ©2016 AACR.


Asunto(s)
Antígenos B7/fisiología , Neoplasias de la Mama/metabolismo , Glucosa/metabolismo , Subunidad alfa del Factor 1 Inducible por Hipoxia/metabolismo , Especies Reactivas de Oxígeno/metabolismo , Animales , Neoplasias de la Mama/patología , Línea Celular Tumoral , Proliferación Celular , Femenino , Xenoinjertos , Humanos , Ratones , Ratones Desnudos
17.
J Biomed Semantics ; 7: 24, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27152146

RESUMEN

In recent years, sequencing technologies have enabled the identification of a wide range of non-coding RNAs (ncRNAs). Unfortunately, annotation and integration of ncRNA data has lagged behind their identification. Given the large quantity of information being obtained in this area, there emerges an urgent need to integrate what is being discovered by a broad range of relevant communities. To this end, the Non-Coding RNA Ontology (NCRO) is being developed to provide a systematically structured and precisely defined controlled vocabulary for the domain of ncRNAs, thereby facilitating the discovery, curation, analysis, exchange, and reasoning of data about structures of ncRNAs, their molecular and cellular functions, and their impacts upon phenotypes. The goal of NCRO is to serve as a common resource for annotations of diverse research in a way that will significantly enhance integrative and comparative analysis of the myriad resources currently housed in disparate sources. It is our belief that the NCRO ontology can perform an important role in the comprehensive unification of ncRNA biology and, indeed, fill a critical gap in both the Open Biological and Biomedical Ontologies (OBO) Library and the National Center for Biomedical Ontology (NCBO) BioPortal. Our initial focus is on the ontological representation of small regulatory ncRNAs, which we see as the first step in providing a resource for the annotation of data about all forms of ncRNAs. The NCRO ontology is free and open to all users, accessible at: http://purl.obolibrary.org/obo/ncro.owl.


Asunto(s)
Ontologías Biológicas , ARN no Traducido , ARN no Traducido/genética , ARN no Traducido/metabolismo
18.
J Biomed Semantics ; 7: 25, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27175225

RESUMEN

As a special class of non-coding RNAs (ncRNAs), microRNAs (miRNAs) perform important roles in numerous biological and pathological processes. The realization of miRNA functions depends largely on how miRNAs regulate specific target genes. It is therefore critical to identify, analyze, and cross-reference miRNA-target interactions to better explore and delineate miRNA functions. Semantic technologies can help in this regard. We previously developed a miRNA domain-specific application ontology, Ontology for MIcroRNA Target (OMIT), whose goal was to serve as a foundation for semantic annotation, data integration, and semantic search in the miRNA field. In this paper we describe our continuing effort to develop the OMIT, and demonstrate its use within a semantic search system, OmniSearch, designed to facilitate knowledge capture of miRNA-target interaction data. Important changes in the current version OMIT are summarized as: (1) following a modularized ontology design (with 2559 terms imported from the NCRO ontology); (2) encoding all 1884 human miRNAs (vs. 300 in previous versions); and (3) setting up a GitHub project site along with an issue tracker for more effective community collaboration on the ontology development. The OMIT ontology is free and open to all users, accessible at: http://purl.obolibrary.org/obo/omit.owl. The OmniSearch system is also free and open to all users, accessible at: http://omnisearch.soc.southalabama.edu/index.php/Software.


Asunto(s)
Biología Computacional/métodos , Epistasis Genética/genética , Ontología de Genes , MicroARNs/genética , Semántica , Interfaz Usuario-Computador
19.
Int J Data Min Bioinform ; 15(3): 214-232, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27990175

RESUMEN

Identification of non-coding RNAs (ncRNAs) has been significantly improved over the past decade. On the other hand, semantic annotation of ncRNA data is facing critical challenges due to the lack of a comprehensive ontology to serve as common data elements and data exchange standards in the field. We developed the Non-Coding RNA Ontology (NCRO) to handle this situation. By providing a formally defined ncRNA controlled vocabulary, the NCRO aims to fill a specific and highly needed niche in semantic annotation of large amounts of ncRNA biological and clinical data.

20.
Nat Commun ; 3: 1271, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-23232401

RESUMEN

It is well known that ErbB2, a receptor tyrosine kinase, localizes to the plasma membrane. Here we describe a novel observation that ErbB2 also localizes in mitochondria of cancer cells and patient samples. We found that ErbB2 translocates into mitochondria through association with mtHSP70. Additionally, mitochondrial ErbB2 (mtErbB2) negatively regulates mitochondrial respiratory functions. Oxygen consumption and activities of complexes of the mitochondrial electron transport chain were decreased in mtErbB2-overexpressing cells. Mitochondrial membrane potential and cellular ATP levels were also decreased. In contrast, mtErbB2 enhanced cellular glycolysis. The translocation of ErbB2 and its impact on mitochondrial function are kinase dependent. Interestingly, cancer cells with higher levels of mtErbB2 were more resistant to the ErbB2-targeting antibody trastuzumab. Our study provides a novel perspective on the metabolic regulatory function of ErbB2 and reveals that mtErbB2 has an important role in the regulation of cellular metabolism and cancer cell resistance to therapeutics.


Asunto(s)
Mitocondrias/fisiología , Receptor ErbB-2/fisiología , Anticuerpos Monoclonales Humanizados/farmacología , Antineoplásicos/farmacología , Neoplasias de la Mama/metabolismo , Neoplasias de la Mama/fisiopatología , Línea Celular Tumoral , Respiración de la Célula/fisiología , Resistencia a Antineoplásicos/fisiología , Transporte de Electrón/fisiología , Femenino , Glucólisis/fisiología , Proteínas HSP70 de Choque Térmico/fisiología , Humanos , Mitocondrias/metabolismo , Fosforilación Oxidativa , Transporte de Proteínas , Receptor ErbB-2/metabolismo , Trastuzumab
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