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1.
Cell Microbiol ; 16(9): 1354-65, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24628957

RESUMEN

Lepidopterans as other insects have a very potent innate immune system, which basically comprises cellular and humoral defence mechanisms against bacterial and fungal infections. In lepidopterans, not much is known about the defence mechanisms against viral pathogens, such as baculoviruses. Here we show that small silk proteins of the domesticated silkworm, Bombyx mori, called seroins, act as antiviral agents against a baculovirus pathogen, Bombyx mori nucleopolyhedrovirus (BmNPV). Involvement of these proteins in the inhibition of baculovirus infection was revealed by estimating the viral load upon their dsRNA-mediated knockdown. Additionally, we found through antimicrobial assays that seroins are potent inhibitors of bacterial growth. Binding competition assays followed by antimicrobial assays showed that seroins bind to peptidoglycan, a cell wall component of bacteria. Analysis of bacterial load upon knockdown of seroins resulted in higher proliferation of bacteria. Phylogenetic analysis showed the recent origin of seroins in a few moth species and duplication only in Bombycids. The antiviral and antibacterial activity of seroins shown in this study using several biochemical and molecular biological assays provide strong evidence to characterize them as antimicrobial proteins. Hence, we hypothesize that seroins are potent candidates for use in development of transgene-based disease resistant silkworm strains.


Asunto(s)
Antibacterianos/metabolismo , Antivirales/metabolismo , Bombyx/metabolismo , Animales , Antibacterianos/farmacología , Antivirales/farmacología , Bacterias Grampositivas/efectos de los fármacos , Proteínas de Insectos/metabolismo , Proteínas de Insectos/farmacología , Nucleopoliedrovirus/efectos de los fármacos , Peptidoglicano/química , Filogenia
2.
J Food Sci Technol ; 52(6): 3187-202, 2015 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-26028701

RESUMEN

Rice is a staple and widely grown crop endowed with rich genetic diversity. As it is difficult to differentiate seeds of various rice varieties based on visual observation accurately, the harvested seeds and subsequent processed products are highly prone to adulteration with look-alike and low quality seeds by the dishonest traders. To protect the interests of importing countries and consumers, several methods have been employed over the last few decades for unambiguous discrimination of cultivars, accurate quantification of the adulterants, and for determination of cultivated geographical area. With recent advances in biotechnology, DNA based techniques evolved rapidly and proved successful over conventional non-DNA based methods to purge the problem of adulteration at commercial level. In the current review, we made an attempt to summarize the existing methods of adulteration detection and quantification in a comprehensive manner by providing Basmati as a case study to enable the traders to arrive at a quick resolution in choosing the apt method to eliminate the adulteration practice in the global rice industry.

3.
J Virol ; 86(15): 7867-79, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22593162

RESUMEN

MicroRNAs have emerged as key players in the regulation of various biological processes in eukaryotes, including host-pathogen interactions. Recent studies suggest that viruses encode miRNAs to manipulate their host gene expression to ensure their effective proliferation, whereas the host limits virus infection by differentially expressing miRNAs that target essential viral genes. Here, we demonstrate that an insect virus, Bombyx mori nucleopolyhedrosis virus (BmNPV), modulates the small-RNA-mediated defense of its host, B. mori, by encoding an miRNA (bmnpv-miR-1) that downregulates the expression of the host GTP-binding nuclear protein Ran, an essential component of the exportin-5-mediated nucleocytoplasmic transport machinery mainly involved in small-RNA transport from the nucleus to the cytoplasm. We demonstrate the sequence-dependent interaction of bmnpv-miR-1 with Ran mRNA using cell culture and in vivo assays, including RNA interference (RNAi) of Ran. Our results clearly show that bmnpv-miR-1 represses Ran, leading to reduction in the host small-RNA population, and consequently, the BmNPV load increases in the infected larvae. Blocking of bmnpv-miR-1 resulted in higher expression levels of Ran and a decrease in BmNPV proliferation. In contrast, blockage of host miRNA, bmo-miR-8, which targets the immediate-early gene of the virus and whose production was repressed upon bmnpv-miR-1 and Ran dsRNA administration, resulted in a significant increase in the virus load in the infected B. mori larvae. The present study provides an insight into one of the evasion strategies used by the virus to counter the host defense for its effective proliferation and has relevance to the development of insect virus control strategies.


Asunto(s)
Bombyx/virología , Núcleo Celular/metabolismo , Proteínas de Insectos/metabolismo , MicroARNs/metabolismo , Nucleopoliedrovirus/metabolismo , ARN Viral/metabolismo , Proteína de Unión al GTP ran/metabolismo , Transporte Activo de Núcleo Celular/fisiología , Animales , Bombyx/genética , Bombyx/metabolismo , Núcleo Celular/genética , Núcleo Celular/virología , Proteínas de Insectos/genética , Carioferinas/genética , Carioferinas/metabolismo , Larva/genética , Larva/metabolismo , Larva/virología , MicroARNs/genética , Nucleopoliedrovirus/genética , ARN Viral/genética , Proteína de Unión al GTP ran/genética
4.
Mol Genet Genomics ; 287(9): 731-9, 2012 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-22842670

RESUMEN

To construct an effective site-specific integration system in the silkworm, we examined if phiC31 integrase works in silkworm embryos. As an assay system, we constructed an extrachromosomal cassette exchange reaction system between two attP sites of an acceptor plasmid and two attB sites of a donor plasmid. To evaluate the activity, integrase mRNAs synthesized from three different plasmids were used. We injected a mixture of the acceptor and donor plasmids with the mRNA synthesized in vitro from one of the three plasmids into silkworm embryos at 4-6 h after oviposition and recovered plasmid DNAs from the embryos 3 days after injection. The resultant plasmids were transformed into Escherichia coli and spread on selection medium plates containing the appropriate antibiotics. A colony-forming assay and restriction enzyme digestion of the plasmids purified from the colonies showed that the phiC31 integrase worked very efficiently in the silkworm embryos. Notably, a phiC31 integrase mRNA synthesized from two of the plasmids produced cassette exchange plasmids at a high frequency, suggesting that the mRNA can be used to construct a targeted integration system in silkworms.


Asunto(s)
Bombyx/embriología , Bombyx/enzimología , Embrión no Mamífero/enzimología , Integrasas/metabolismo , Animales , Bombyx/genética , Femenino , Integrasas/genética , Mutagénesis Insercional/genética , Plásmidos/genética , Recombinación Genética
5.
Genetica ; 139(1): 141-7, 2011 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-21120683

RESUMEN

Intersex (ix), a gene required for female sexual development in Drosophila, acts in concert with doublesex (dsx) at the end of the sex determination pathway. In the present study a homologue of ix was identified in Bombyx mori. Expression analysis of this gene by RT-PCR and RNase protection assay revealed a diagnostic alternative splice form present only in testis, whereas the most common splice form was found to express in all other tissues from early embryonic developmental stages. The present study provides evidence for the presence of an alternative splice form of ix in three species of silkmoths examined. Taken together with the results of an earlier study on ix in piralid moth, Maruca vitrata (Cavaliere et al. 2009), the present study suggests that the testis-specific splice form may be a characteristic feature of lepidopterans. Though ix lacks a conserved splicing pattern it appears to have retained its functional conservation in terminal sexual differentiation. We speculate that the presence of an additional splice form, perhaps encoding non-functional protein only in testis, may prevent the feminizing effects exerted by the functional IX protein.


Asunto(s)
Bombyx/genética , Proteínas de Drosophila/genética , Proteínas de Insectos/genética , Procesos de Determinación del Sexo/genética , Factores de Transcripción/genética , Empalme Alternativo , Secuencia de Aminoácidos , Animales , Proteínas de Drosophila/clasificación , Evolución Molecular , Femenino , Proteínas de Insectos/clasificación , Masculino , Datos de Secuencia Molecular , Filogenia , Factores de Transcripción/clasificación
6.
Genetics ; 182(2): 493-501, 2009 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-19332883

RESUMEN

The role of sex chromosomes in sex determination has been well studied in diverse groups of organisms. However, the role of the genes on the sex chromosomes in conferring sexual dimorphism is still being experimentally evaluated. An unequal complement of sex chromosomes between two sexes makes them amenable to sex-specific evolutionary forces. Sex-linked genes preferentially expressed in one sex over the other offer a potential means of addressing the role of sex chromosomes in sexual dimorphism. We examined the testis transcriptome of the silkworm, Bombyx mori, which has a ZW chromosome constitution in the female and ZZ in the male, and show that the Z chromosome harbors a significantly higher number of genes expressed preferentially in testis compared to the autosomes. We hypothesize that sexual antagonism and absence of dosage compensation have possibly led to the accumulation of many male-specific genes on the Z chromosome. Further, our analysis of testis-specific paralogous genes suggests that the accumulation on the Z chromosome of genes advantageous to males has occurred primarily by translocation or tandem duplication.


Asunto(s)
Bombyx/genética , Genes de Insecto/genética , Cromosomas Sexuales/genética , Testículo/metabolismo , Animales , Biología Computacional , Secuencia Conservada , Etiquetas de Secuencia Expresada , Femenino , Perfilación de la Expresión Génica , Variación Genética , Humanos , Masculino , Especificidad de Órganos/genética , Mapeo Físico de Cromosoma , Translocación Genética
7.
Nucleic Acids Res ; 35(Database issue): D36-9, 2007 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-17082205

RESUMEN

InSatDb presents an interactive interface to query information regarding microsatellite characteristics per se of five fully sequenced insect genomes (fruit-fly, honeybee, malarial mosquito, red-flour beetle and silkworm). InSatDb allows users to obtain microsatellites annotated with size (in base pairs and repeat units); genomic location (exon, intron, up-stream or transposon); nature (perfect or imperfect); and sequence composition (repeat motif and GC%). One can access microsatellite cluster (compound repeats) information and a list of microsatellites with conserved flanking sequences (microsatellite family or paralogs). InSatDb is complete with the insects information, web links to find details, methodology and a tutorial. A separate 'Analysis' section illustrates the comparative genomic analysis that can be carried out using the output. InSatDb is available at www.cdfd.org.in/insatdb.


Asunto(s)
Bases de Datos de Ácidos Nucleicos , Genoma de los Insectos , Repeticiones de Microsatélite , Animales , Anopheles/genética , Abejas/genética , Bombyx/genética , Drosophila melanogaster/genética , Genómica , Internet , Tribolium/genética , Interfaz Usuario-Computador
8.
BMC Evol Biol ; 8: 174, 2008 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-18544161

RESUMEN

BACKGROUND: Domestication of chicken is believed to have occurred in Southeast Asia, especially in Indus valley. However, non-inclusion of Indian red jungle fowl (RJF), Gallus gallus murghi in previous studies has left a big gap in understanding the relationship of this major group of birds. In the present study, we addressed this issue by analyzing 76 Indian birds that included 56 G. g. murghi (RJF), 16 G. g. domesticus (domestic chicken) and 4 G. sonneratii (Grey JF) using both microsatellite markers and mitochondrial D-loop sequences. We also compared the D-loop sequences of Indian birds with those of 779 birds obtained from GenBank. RESULTS: Microsatellite marker analyses of Indian birds indicated an average FST of 0.126 within G. g. murghi, and 0.154 within G. g. domesticus while it was more than 0.2 between the two groups. The microsatellite-based phylogenetic trees showed a clear separation of G. g. domesticus from G. g. murghi, and G. sonneratii. Mitochondrial DNA based mismatch distribution analyses showed a lower Harpending's raggedness index in both G. g. murghi (0.001515) and in Indian G. g. domesticus (0.0149) birds indicating population expansion. When meta analysis of global populations of 855 birds was carried out using median joining haplotype network, 43 Indian birds of G. g. domesticus (19 haplotypes) were distributed throughout the network sharing haplotypes with the RJFs of different origins. CONCLUSION: Our results suggest that the domestication of chicken has occurred independently in different locations of Asia including India. We found evidence for domestication of Indian birds from G. g. spadiceus and G. g. gallus as well as from G. g. murghi, corroborating multiple domestication of Indian and other domestic chicken. In contrast to the commonly held view that RJF and domestic birds hybridize in nature, the present study shows that G. g. murghi is relatively pure. Further, the study also suggested that the chicken populations have undergone population expansion, especially in the Indus valley.


Asunto(s)
Animales Domésticos/genética , Pollos/genética , ADN Mitocondrial/genética , Repeticiones de Microsatélite/genética , Animales , Secuencia de Bases , Pollos/clasificación , Evolución Molecular , Variación Genética , Haplotipos , India , Datos de Secuencia Molecular , Filogenia , Análisis de Componente Principal , Alineación de Secuencia
9.
BMC Genomics ; 9: 338, 2008 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-18637161

RESUMEN

BACKGROUND: Functional genomics has particular promise in silkworm biology for identifying genes involved in a variety of biological functions that include: synthesis and secretion of silk, sex determination pathways, insect-pathogen interactions, chorionogenesis, molecular clocks. Wild silkmoths have hardly been the subject of detailed scientific investigations, owing largely to non-availability of molecular and genetic data on these species. As a first step, in the present study we generated large scale expressed sequence tags (EST) in three economically important species of wild silkmoths. In order to make these resources available for the use of global scientific community, an EST database called 'WildSilkbase' was developed. DESCRIPTION: WildSilkbase is a catalogue of ESTs generated from several tissues at different developmental stages of 3 economically important saturniid silkmoths, an Indian golden silkmoth, Antheraea assama, an Indian tropical tasar silkmoth, A. mylitta and eri silkmoth, Samia cynthia ricini. Currently the database is provided with 57,113 ESTs which are clustered and assembled into 4,019 contigs and 10,019 singletons. Data can be browsed and downloaded using a standard web browser. Users can search the database either by BLAST query, keywords or Gene Ontology query. There are options to carry out searches for species, tissue and developmental stage specific ESTs in BLAST page. Other features of the WildSilkbase include cSNP discovery, GO viewer, homologue finder, SSR finder and links to all other related databases. The WildSilkbase is freely available from http://www.cdfd.org.in/wildsilkbase/. CONCLUSION: A total of 14,038 putative unigenes was identified in 3 species of wild silkmoths. These genes provide important resources to gain insight into the functional and evolutionary study of wild silkmoths. We believe that WildSilkbase will be extremely useful for all those researchers working in the areas of comparative genomics, functional genomics and molecular evolution in general, and gene discovery, gene organization, transposable elements and genome variability of insect species in particular.


Asunto(s)
Bombyx/genética , Bases de Datos Genéticas , Etiquetas de Secuencia Expresada , Animales , Secuencia de Bases , Análisis por Conglomerados , Mapeo Contig , ADN Complementario , Genes , Genómica/métodos , Almacenamiento y Recuperación de la Información , Internet , Modelos Genéticos , Datos de Secuencia Molecular , Polimorfismo de Nucleótido Simple , Análisis de Secuencia de ADN , Especificidad de la Especie , Interfaz Usuario-Computador
10.
Insect Mol Biol ; 17(4): 427-36, 2008 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-18651924

RESUMEN

MicroRNAs (miRNAs), are endogenous, ~22-nucleotide-long RNA molecules. They bind to the complementary sites on target mRNAs and regulate protein production of the target transcript by unknown mechanisms. Since the discovery of first miRNA in Caenorhabditis elegans, different approaches have been pursued for the prediction of miRNAs and their target(s). Because of many difficulties and limitations involved in the experimental identification of spatially and temporally expressed miRNAs, many computational approaches have been successfully employed for prediction of miRNAs and their target(s). In the present study, we demonstrate a genome-wide computational approach to predict miRNAs and their target(s) in the red flour beetle, Tribolium castaneum. We have predicted and characterized 45 miRNAs by genome-wide homology search against all the reported miRNAs. These miRNAs were further validated by statistical and phylogenetic analyses. In addition, we have also attempted to predict the putative targets of these miRNAs, by making use of 3' untranslated regions of mRNAs from T. castaneum. These miRNAs and their targets in T. castaneum will serve as useful resources for initiating studies on their experimental validation and functional analyses of miRNA-regulated phenotypes in T. castaneum through gene knockdown and transgenesis.


Asunto(s)
Escarabajos/genética , Escarabajos/metabolismo , Simulación por Computador , MicroARNs/genética , MicroARNs/metabolismo , Animales , Modelos Biológicos , Filogenia
11.
FEMS Microbiol Lett ; 272(2): 251-8, 2007 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-17521359

RESUMEN

The utility of inter simple sequence repeat-PCR (ISSR-PCR) assay in the characterization and elucidation of the phylogenetic relationship between the pathogenic and nonpathogenic isolates of Vibrio cholerae is demonstrated. A total of 45 V. cholerae strains including 15 O1 El Tor, nine O139 and 21 non-O1/non-O139 strains were analyzed using eight ISSR primers. These primers, which are essentially simple sequence repeats (SSR) with additional nonrepeat bases at the 5' or 3' end, amplify genomic regions interspersed between closely spaced SSRs. Neighbor-joining analysis showed that the strains belonging to the same serogroup clustered together with the exception of one O1 and two O139 strains. The absence of pathogenicity islands in these strains, as confirmed by PCR, suggested their non-O1/non-O139 origin. Thus the ISSR-PCR-based phylogeny was consistent with the classification of V. cholerae based on serological methods. A finer resolution of the clustering of the toxinogenic O1 El Tor and toxinogenic O139 subtypes was obtained by ISSR-PCR analysis as compared with the Enterobacterial Repetitive Intergenic Consensus sequences-based PCR analysis for the same set of strains. Thus, it is proposed that ISSR-PCR is an efficient tool in phylogenetic classification of prokaryotic genomes in general and diagnostic genotyping of microbial pathogens in particular.


Asunto(s)
Técnicas de Tipificación Bacteriana/métodos , ADN Bacteriano/genética , Repeticiones de Microsatélite/genética , Reacción en Cadena de la Polimerasa/métodos , Vibrio cholerae/clasificación , Vibrio cholerae/genética , Análisis por Conglomerados , Islas Genómicas , Genotipo , Fenotipo , Filogenia , Serotipificación
12.
Genomics Proteomics Bioinformatics ; 5(3-4): 196-206, 2007 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-18267301

RESUMEN

Bioinformatic approaches have complemented experimental efforts to inventorize plant miRNA targets. We carried out global computational analysis of rice (Oryza sativa) transcriptome to generate a comprehensive list of putative miRNA targets. Our predictions (684 unique transcripts) showed that rice miRNAs mediate regulation of diverse functions including transcription (41%), catalysis (28%), binding (18%), and transporter activity (11%). Among the predicted targets, 61.7% hits were in coding regions and nearly 72% targets had a solitary miRNA hit. The study predicted more than 70 novel targets of 34 miRNAs putatively regulating functions like stress-response, catalysis, and binding. It was observed that more than half (55%) of the targets were conserved between O. sativa indica and O. sativa japonica. Members of 31 miRNA families were found to possess conserved targets between rice and at least one of other grass family members. About 44% of the unique targets were common between two dissimilar miRNA prediction algorithms. Such an extent of cross-species conservation and algorithmic consensus confers confidence in the list of rice miRNA targets predicted in this study.


Asunto(s)
MicroARNs/genética , Oryza/genética , ARN de Planta/genética , Algoritmos , Arabidopsis/genética , Arabidopsis/metabolismo , Secuencia Conservada , Bases de Datos de Ácidos Nucleicos , Perfilación de la Expresión Génica/estadística & datos numéricos , Genómica/estadística & datos numéricos , MicroARNs/metabolismo , Modelos Genéticos , Oryza/clasificación , Oryza/metabolismo , Poaceae/clasificación , Poaceae/genética , Poaceae/metabolismo , ARN de Planta/metabolismo , Especificidad de la Especie
13.
Nucleic Acids Res ; 33(Database issue): D403-6, 2005 Jan 01.
Artículo en Inglés | MEDLINE | ID: mdl-15608226

RESUMEN

The SilkSatDb (silkmoth microsatellite database) (http://www.cdfd.org.in/silksatdb) is a relational database of microsatellites extracted from the available expressed sequence tags and whole genome shotgun sequences of the silkmoth, Bombyx mori. The database has been rendered with a simple and robust web-based search facility, developed using PHP. The SilkSatDb also stores information on primers developed and validated in the laboratory. Users can retrieve information on the microsatellite and the protocols used, along with informative figures and polymorphism status of those microsatellites. In addition, the interface is coupled with Autoprimer, a primer-designing program, using which users can design primers for the loci of interest.


Asunto(s)
Bombyx/genética , Bases de Datos de Ácidos Nucleicos , Repeticiones de Microsatélite , Animales , Internet , Análisis de Secuencia de ADN , Interfaz Usuario-Computador
14.
BMC Genomics ; 7: 184, 2006 Jul 21.
Artículo en Inglés | MEDLINE | ID: mdl-16857061

RESUMEN

BACKGROUND: In the recent years a strong resemblance has been observed between the insect immune system and the mammalian innate immune mechanisms suggesting their common origin. Among the insects, only the dipterans (Drosophila and various mosquito species) have been widely investigated for their immune responses towards diverse pathogens. In the present study we constructed and analysed the immune transcriptome of the lepidopteran Antheraea mylitta, an economically important Indian tasar silkmoth with a view to unravel the potential immune-related genes and pathways. RESULTS: An expressed sequence tag (EST) library was constructed from mRNA obtained from fat bodies of A. mylitta larvae that had been challenged by infection with Escherichia coli cells. We identified 719 unique ESTs from a total of 1412 sequences so generated. A third of the transcriptome showed similarity with previously characterized immune-related genes that included both the known and putative immune genes. Of the four putative novel defence proteins (DFPs) annotated by PSI-BLAST three showed similarity to extracellular matrix proteins from vertebrates implicated in innate immunity, while the fourth was similar to, yet distinct from, the anti-microbial protein cecropin. Finally, we analysed the expression profiles of 15 potential immune-related genes, and the majority of them were induced more prominently with E. coli compared to Micrococcus luteus. We also identified several unknown proteins, some of which could have probable immune-related functions based on the results of the ProDom analysis. CONCLUSION: The present study has identified many potential immune-related genes in A. mylitta some of which are vertebrate homologues and others are hitherto unreported putative defence proteins. Several genes were present as members of gene families, as has also been observed in other insect species.


Asunto(s)
Perfilación de la Expresión Génica/métodos , Mariposas Nocturnas/genética , Mariposas Nocturnas/inmunología , Secuencia de Aminoácidos , Animales , Bases de Datos Genéticas , Escherichia coli , Etiquetas de Secuencia Expresada , Antígenos de Histocompatibilidad Clase II/clasificación , Antígenos de Histocompatibilidad Clase II/genética , Inmunidad Innata/genética , Larva/genética , Larva/inmunología , Larva/metabolismo , Micrococcus luteus/patogenicidad , Datos de Secuencia Molecular , Mariposas Nocturnas/microbiología , Señales de Clasificación de Proteína/genética , Estructura Terciaria de Proteína , Homología de Secuencia de Aminoácido , Homología de Secuencia de Ácido Nucleico
15.
Genetics ; 169(1): 197-214, 2005 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-15371363

RESUMEN

We studied microsatellite frequency and distribution in 21.76-Mb random genomic sequences, 0.67-Mb BAC sequences from the Z chromosome, and 6.3-Mb EST sequences of Bombyx mori. We mined microsatellites of >/=15 bases of mononucleotide repeats and >/=5 repeat units of other classes of repeats. We estimated that microsatellites account for 0.31% of the genome of B. mori. Microsatellite tracts of A, AT, and ATT were the most abundant whereas their number drastically decreased as the length of the repeat motif increased. In general, tri- and hexanucleotide repeats were overrepresented in the transcribed sequences except TAA, GTA, and TGA, which were in excess in genomic sequences. The Z chromosome sequences contained shorter repeat types than the rest of the chromosomes in addition to a higher abundance of AT-rich repeats. Our results showed that base composition of the flanking sequence has an influence on the origin and evolution of microsatellites. Transitions/transversions were high in microsatellites of ESTs, whereas the genomic sequence had an equal number of substitutions and indels. The average heterozygosity value for 23 polymorphic microsatellite loci surveyed in 13 diverse silkmoth strains having 2-14 alleles was 0.54. Only 36 (18.2%) of 198 microsatellite loci were polymorphic between the two divergent silkworm populations and 10 (5%) loci revealed null alleles. The microsatellite map generated using these polymorphic markers resulted in 8 linkage groups. B. mori microsatellite loci were the most conserved in its immediate ancestor, B. mandarina, followed by the wild saturniid silkmoth, Antheraea assama.


Asunto(s)
Bombyx/genética , Genes de Insecto , Marcadores Genéticos/genética , Repeticiones de Microsatélite/genética , Mutación/genética , Polimorfismo Genético , Animales , Bombyx/clasificación , Cromosomas Artificiales Bacterianos , Biología Computacional , Secuencia Conservada , Etiquetas de Secuencia Expresada , Cromosomas Sexuales/genética
16.
J Econ Entomol ; 98(2): 248-59, 2005 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-15889710

RESUMEN

The sterile insect technique (SIT) is currently being used for the control of many agricultural pests, including some lepidopteran species. The SIT relies on the rearing and release of large numbers of genetically sterile insects into a wild population. The holokinetic chromosomes of Lepidoptera respond differently to radiation than do species where there is a localized centromere. This difference has enabled a variation of the SIT to be developed for Lepidoptera where a substerilizing dose of radiation is given to the insects before their release with the result that a certain level of sterility is inherited by the F1 offspring. The development of genetic sexing strains for fruit flies, enabling the release of males only, has resulted in enormous economic benefits in the mass rearing and has increased the efficiency of the field operations severalfold. This article outlines Mendelian approaches that are currently available to separate large numbers of males and females efficiently for different lepidopteran species and describes their difficulties and constraints. Successful transgenesis in several lepidopteran species opens up new possibilities to develop genetic sexing strains. The proposal to develop genetic sexing strains described in this article takes advantage of the fact that in Lepidoptera, the female is the heterogametic sex, with most species having aWZ sex chromosome pair, whereas the males are ZZ. This means that if a conditional lethal gene can be inserted into the W chromosome, then all females should die after the application of the restrictive condition. The assumptions made to accommodate this model are discussed, and the advantages to be gained for control programs are elucidated.


Asunto(s)
Animales Modificados Genéticamente , Genes Letales/genética , Lepidópteros/genética , Control Biológico de Vectores/métodos , Animales , Femenino , Masculino , Mariposas Nocturnas/genética , Caracteres Sexuales , Cromosomas Sexuales/genética
17.
Sci Rep ; 5: 15728, 2015 Oct 29.
Artículo en Inglés | MEDLINE | ID: mdl-26510465

RESUMEN

Indian tasar silkmoth, Antheraea mylitta is an economically important wild silkmoth species distributed across India. A number of morphologically and ethologically well-defined ecotypes are known for this species that differ in their primary food plant specificity. Most of these ecotypes do not interbreed in nature, but are able to produce offspring under captive conditions. Microsatellite markers were developed for A. mylitta, and out of these, ten well-behaved microsatellite loci were used to analyze the population structure of different ecoraces. A total of 154 individual moths belonging to eight different ecoraces, were screened at each locus. Hierarchical analysis of population structure using Analysis of MOlecular VAriance (AMOVA) revealed significant structuring (FST = 0.154) and considerable inbreeding (FIS = 0.505). A significant isolation by distance was also observed. The number of possible population clusters was investigated using distance method, Bayesian algorithm and self organization maps (SOM). The first two methods revealed two distinct clusters, whereas the SOM showed the different ecoraces not to be clearly differentiated. These results suggest that although there is a large degree of phenotypic variation among the different ecoraces of A. mylitta, genetically they are not very different, and the phenotypic differences may largely be a result of their respective ecology.


Asunto(s)
Bombyx/genética , Sitios Genéticos , Variación Genética , Repeticiones de Microsatélite , Modelos Genéticos , Animales , India
18.
Insect Biochem Mol Biol ; 33(2): 185-95, 2003 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-12535677

RESUMEN

Preferential localization of Bkm (Banded krait minor-satellite) DNA sequences on Y/W chromosomes of higher eukaryotes, which remain highly condensed in somatic cells but undergo extensive decondensation in the germ cells during early stages of development, led to the postulation for the existence of a sex- and tissue-specific Bkm-binding protein (BBP). Accordingly, we purified and characterized a BmBBP expressed predominantly in pupal ovary of the silkworm (Bombyx mori). 2D-PAGE revealed BmBBP as moderately basic (pI 7.8-8, in the range expected for DNA-binding proteins) and Matrix Assisted Laser Desorption/Ionization Time of Flight exhibited a value of 37.5-kDa. BmBBP neither contains nor requires divalent metal ions for its DNA-binding activity, suggesting that it does not belong to the well-studied GATA-family of transcription factors. BmBBP is unusually strong in its DNA-binding characteristics to Bkm (GATA-repeats), which suggests its probable role in bringing about coordinated chromatin conformational changes to activate genes present in associated chromosomal domains. Fluorescence immuno-localization studies employing specific anti-BmBBP antibodies revealed its presence in the follicle cells and in the ooplasm, as well as the nucleus of different developmental stages of oocytes.


Asunto(s)
Bombyx/crecimiento & desarrollo , Proteínas de Insectos/genética , Ovario/fisiología , Animales , Electroforesis en Gel de Poliacrilamida , Femenino , Regulación del Desarrollo de la Expresión Génica , Immunoblotting , Larva , Ratones , Microscopía Fluorescente , Pupa , Espectrometría de Masa por Láser de Matriz Asistida de Ionización Desorción
19.
Genes Genet Syst ; 79(5): 293-9, 2004 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-15599059

RESUMEN

The nasuta subgroup is a cluster of morphologically almost similar forms with a wide range of geographic distribution. During the last three decades nature of inter-relationship among the members has been investigated at different levels of organization. The phylogenetic relationships of the members of the nasuta subgroup of the immigrans species group of Drosophila was made by employing Random Amplified Polymorphic DNA (RAPD), Inter Simple Sequence Repeats-PCR (ISSR-PCR) polymorphisms, mitochondrial 12S rRNA, 16S rRNA and Cytochrome C Oxidase subunit I (CoI) gene sequences. The phylogenetic tree generated by RAPD analysis is in nearly complete congruence with the classification based on morphophenotypic characters. The 12S and 16S rRNA genes were highly conserved across the nasuta subgroup and revealed only 3 and 4 variable sites respectively, of which only one site was informative. The CoI gene, on the other hand, revealed 57 variable sites of which 25 sites were informative. All the three species of orbital sheen complex were included in a major cluster in the phylogenetic trees derived from mitochondrial gene sequence data consistent with the morphophenotypic classification. The CoI analysis placed two species of frontal sheen complex, D. n. nasuta and D. n. albomicans in two different clades and this is inconsistent with morphological classification. The molecular clock suggested that divergence between the kohkoa complex and the albomicans complex occurred approximately 2.2 MYA, indicating recent evolution of the nasuta subgroup. The higher transition bias in the mitochondrial genes reported in the present study also suggested recent evolution of the nasuta subgroup.


Asunto(s)
Drosophila/clasificación , Drosophila/genética , Complejo IV de Transporte de Electrones/genética , Filogenia , Polimorfismo Genético , ARN Ribosómico 16S/genética , ARN Ribosómico/genética , Animales , ADN Mitocondrial/análisis , Masculino , Reacción en Cadena de la Polimerasa , Técnica del ADN Polimorfo Amplificado Aleatorio
20.
J Biosci ; 28(4): 443-53, 2003 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-12799491

RESUMEN

Mariner like elements (MLEs) are widely distributed type II transposons with an open reading frame (ORF) for transposase. We studied comparative phylogenetic evolution and inverted terminal repeat (ITR) conservation of MLEs from Indian saturniid silkmoth, Antheraea mylitta with other full length MLEs submitted in the database. Full length elements from A. mylitta were inactive with multiple mutations. Many conserved amino acid blocks were identified after aligning transposase sequences. Mariner signature sequence, DD(34)D was almost inva ri able although a few new class of elements had different signatures. A. mylitta MLEs (Anmmar) get phylogene ti cally classified under cecropia subfamily and cluster closely with the elements from other Bombycoidea superfamily members implying vertical transmission from a common ancestor. ITR analysis showed a conserved sequence of AGGT(2-8N)ATAAGT for forward repeat and AGGT(2-8N)ATGAAAT for reverse repeat. These results and additional work may help us to understand the dynamics of MLE distribution in A. mylitta and construction of appropriate vectors for mariner mediated transgenics.


Asunto(s)
Bombyx/genética , Proteínas de Unión al ADN/genética , Secuencia de Aminoácidos , Animales , Southern Blotting , Clonación Molecular , Secuencia Conservada , ADN/metabolismo , Proteínas de Unión al ADN/química , Biblioteca de Genes , Vectores Genéticos , Genoma , India , Datos de Secuencia Molecular , Familia de Multigenes , Sistemas de Lectura Abierta , Filogenia , Reacción en Cadena de la Polimerasa , Análisis de Secuencia de ADN , Homología de Secuencia de Aminoácido , Secuencias Repetidas Terminales , Transposasas
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