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1.
Phytochem Anal ; 34(1): 48-55, 2023 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-36191930

RESUMEN

INTRODUCTION: Data Fusion-based Discovery (DAFdiscovery) is a pipeline designed to help users combine mass spectrometry (MS), nuclear magnetic resonance (NMR), and bioactivity data in a notebook-based application to accelerate annotation and discovery of bioactive compounds. It applies Statistical Total Correlation Spectroscopy (STOCSY) and Statistical HeteroSpectroscopy (SHY) calculation in their data using an easy-to-follow Jupyter Notebook. METHOD: Different case studies are presented for benchmarking, and the resultant outputs are shown to aid natural products identification and discovery. The goal is to encourage users to acquire MS and NMR data from their samples (in replicated samples and fractions when available) and to explore their variance to highlight MS features, NMR peaks, and bioactivity that might be correlated to accelerated bioactive compound discovery or for annotation-identification studies. RESULTS: Different applications were demonstrated using data from different research groups, and it was shown that DAFdiscovery reproduced their findings using a more straightforward method. CONCLUSION: DAFdiscovery has proven to be a simple-to-use method for different situations where data from different sources are required to be analyzed together.


Asunto(s)
Productos Biológicos , Espectroscopía de Resonancia Magnética/métodos , Espectrometría de Masas/métodos
2.
J Nat Prod ; 84(4): 1373-1384, 2021 04 23.
Artículo en Inglés | MEDLINE | ID: mdl-33822611

RESUMEN

Brown algae and soft corals represent the main marine sources of dolabellane diterpenes. The antiviral activity of dolabellanes has been studied for those isolated from algae, whereas dolabellanes isolated from soft corals have been barely studied. In this work, a collection of dolabellane diterpenes consisting of five natural and 21 semisynthetic derivatives was constructed, and their antiviral activities against Zika (ZIKV) and Chikungunya (CHIKV) viruses were tested. Dolabellatrienone (1) and (1R,7R,8R,11S)-7,8-epoxy-13-keto-dolabella-3,12(18)-diene (2), isolated from Eunicea genus soft corals, were employed to obtain 21 dolabellane and dolastane diterpenes by reactions such as allylic oxidations, reductions, acid-catalyzed epoxide ring opening, and acetylations. All of the compounds were identified by a combination of one- and two-dimensional NMR, mass spectrometry, and X-ray diffraction experiments. The cytotoxicites against Vero cells and the antiviral activities against ZIKV and CHIKV was tested to calculate the half-maximal effective concentration (EC50) and selectivity indexes (SIs). In general, the addition of oxygen-containing functional groups improved the bioactivity of dolabellane and dolastane diterpenes against ZIKV and CHIKV replication. Compound 9 showed an EC50 = 0.92 ± 0.08 µM and SI = 820 against ZIKV.


Asunto(s)
Antozoos/química , Antivirales/farmacología , Virus Chikungunya/efectos de los fármacos , Diterpenos/farmacología , Virus Zika/efectos de los fármacos , Animales , Antivirales/síntesis química , Región del Caribe , Chlorocebus aethiops , Colombia , Diterpenos/síntesis química , Estructura Molecular , Oxígeno/química , Células Vero
3.
Molecules ; 25(11)2020 May 29.
Artículo en Inglés | MEDLINE | ID: mdl-32486092

RESUMEN

Previous studies revealed the potential of Labrenzia aggregata USBA 371 to produce cytotoxic metabolites. This study explores its metabolic diversity and compounds involved in its cytotoxic activity. Extracts from the extracellular fraction of strain USBA 371 showed high levels of cytotoxic activity associated with the production of diketopiperazines (DKPs). We purified two compounds and a mixture of two other compounds from this fraction. Their structures were characterized by 1D and 2D nuclear magnetic resonance (NMR). The purified compounds were evaluated for additional cytotoxic activities. Compound 1 (cyclo (l-Pro-l-Tyr)) showed cytotoxicity to the following cancer cell lines: breast cancer 4T1 (IC50 57.09 ± 2.11 µM), 4T1H17 (IC50 40.38 ± 1.94), MCF-7 (IC50 87.74 ± 2.32 µM), murine melanoma B16 (IC50 80.87 ± 3.67), human uterus sarcoma MES-SA/Dx5 P-pg (-) (IC50 291.32 ± 5.64) and MES-SA/Dx5 P-pg (+) (IC50 225.28 ± 1.23), and murine colon MCA 38 (IC50 29.85 ± 1.55). In order to elucidate the biosynthetic route of the production of DKPs and other secondary metabolites, we sequenced the genome of L. aggregata USBA 371. We found no evidence for biosynthetic pathways associated with cyclodipeptide synthases (CDPSs) or non-ribosomal peptides (NRPS), but based on proteogenomic analysis we suggest that they are produced by proteolytic enzymes. This is the first report in which the cytotoxic effect of cyclo (l-Pro-l-Tyr) produced by an organism of the genus Labrenzia has been evaluated against several cancer cell lines.


Asunto(s)
Antineoplásicos/farmacología , Productos Biológicos/farmacología , Rhodobacteraceae/química , Animales , Línea Celular Tumoral , ADN Bacteriano/genética , Dicetopiperazinas/química , Genómica , Humanos , Concentración 50 Inhibidora , Células MCF-7 , Espectroscopía de Resonancia Magnética , Melanoma Experimental , Ratones , Proteómica , ARN Ribosómico 16S/genética
4.
Mar Drugs ; 18(1)2019 Dec 18.
Artículo en Inglés | MEDLINE | ID: mdl-31861453

RESUMEN

The Caribbean soft coral Erythropodium caribaeorum is a rich source of erythrolides-chlorinated briarane diterpenoids. These compounds have an ecological role as feeding deterrents, with a wide variation in their composition depending on the location where the sample is collected. In Colombia, this soft coral can be found at different locations in the Caribbean Sea including Santa Marta, Islas del Rosario, and Providencia-three environmentally different coral reef areas in the south and southwest Caribbean Sea. In order to evaluate differences in erythrolide composition, the metabolic profiles of samples from each of these locations were analyzed by HPLC-MS. Principal component analysis showed changes in the diterpene composition according to the sample origin. Diterpenes from samples collected at each location were isolated to describe the three chemotypes. The chemotype from Santa Marta was highly diverse, with the new erythrolides W and X together with eight known erythrolides. The sample from Islas del Rosario showed a low diversity chemotype constituted by high amounts of erythrolide A and B. The chemotype from Providencia showed low chemical diversity with only two main compounds-erythrolide V and R. Evaluation of cytotoxic activity against the human cancer cell lines PC-3, MCF7, and A549 showed erythrolides A and B as the more active compounds with IC50 values in the range from 2.45 to 30 µM.


Asunto(s)
Antozoos/química , Metaboloma , Animales , Antozoos/metabolismo , Región del Caribe , Colombia , Arrecifes de Coral , Diterpenos/química , Humanos
5.
Bioorg Med Chem Lett ; 24(18): 4381-4383, 2014 Sep 15.
Artículo en Inglés | MEDLINE | ID: mdl-25176328

RESUMEN

Research on dolabellane diterpenes of brown algae Dictyota spp. has shown that these diterpenoids have strong anti-HIV-1 activity, but there are not data about antiviral activity of dolabellane diterpenes isolated from octocorals, which are antipodes of those isolated from the brown algae. Dolabellanes 13-keto-1(R),11(S)-dolabella-3(E),7(E),12(18)-triene (1) and ß-Araneosene (2) were isolated from the Caribbean octocoral Eunicea laciniata, and both showed low anti-HIV-1 activity and low toxicity. Since it was shown that oxygenated dolabellanes from algae have better anti-HIV-1 activity, in this work some derivatives of the main dolabellane of E. laciniata1 were obtained by epoxidation (3), epoxide opening (4), and allylic oxidation (5). The derivatives showed significant improvement in the anti-HIV-1potency (100-fold), being compounds 3 and 5 the most active ones. Their high antiviral activities, along with their low cytotoxicity, make them promissory antiviral compounds; and it is worth noting that the absolute configuration at the ring junction in the dolabellane skeleton does not seem to be determinant in the antiviral potency of these diterpeneoids.


Asunto(s)
Fármacos Anti-VIH/farmacología , Diterpenos/química , VIH/efectos de los fármacos , Oxígeno/química , Fármacos Anti-VIH/síntesis química , Fármacos Anti-VIH/química , Línea Celular Transformada , Relación Dosis-Respuesta a Droga , Humanos , Pruebas de Sensibilidad Microbiana , Conformación Molecular , Relación Estructura-Actividad
6.
Bioorg Med Chem ; 22(24): 6789-95, 2014 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-25468043

RESUMEN

Marine benthic cyanobacteria are widely known as a source of toxic and potentially useful compounds.These microorganisms have been studied from many Caribbean locations, which recently include locations in the Colombian Caribbean Sea. In the present study, six lipopeptides named almiramides D to H, together with the known almiramide B are identified from a mat characterized as Oscillatoria nigroviridis collected at the Island of Providence (Colombia, S.W. Caribbean Sea). The most abundant compounds, almiramides B and D were characterized by NMR and HRESIMS, while the structures of the minor compounds almiramides E to H were proposed by the analysis of their HRESIMS and MS2 spectra. Almiramides B and D were tested against six human cell lines including a gingival fibroblast cell line and five human tumor cell lines (A549, MDA-MB231, MCF-7, HeLa and PC3) showing a strong but not selective toxicity.


Asunto(s)
Lipopéptidos/química , Oscillatoria/metabolismo , Animales , Artemia/efectos de los fármacos , Línea Celular , Supervivencia Celular/efectos de los fármacos , Células HeLa , Humanos , Lipopéptidos/aislamiento & purificación , Lipopéptidos/toxicidad , Espectroscopía de Resonancia Magnética , Conformación Molecular
7.
Eur J Pharm Sci ; 188: 106495, 2023 Sep 01.
Artículo en Inglés | MEDLINE | ID: mdl-37329923

RESUMEN

Candesartan is a nonpeptide angiotensin II receptor blocker that selectively binds to angiotensin II receptor subtype 1. It is administered orally in its ester form (candesartan cilexetil). However, its poor aqueous solubility results in its low bioavailability; therefore, other routes of administration must be explored. The buccal mucosa has been extensively studied as an alternative route for drug delivery as it improves the bioavailability of drugs administered via the peroral route. Porcine buccal mucosa has been widely used as an ex vivo model to study the permeability of various diffusants; however, studies on candesartan are limited. This study aimed to evaluate the ex vivo permeation profile of candesartan and its effects on the viability and integrity of porcine buccal mucosa. Initially, we evaluated the viability, integrity, and barrier function of the buccal tissue before performing permeability tests using freshly excised tissues or tissues after 12 h of resection. Here, three indicators were used: caffeine, ß-estradiol, and FD-20 penetration; mucosal metabolic activity, as determined using MTT reduction assay; and haematoxylin and eosin staining. Our results indicated that the porcine buccal mucosa preserved its viability, integrity, and barrier function before the permeation assay, allowing the passage of molecules with a molecular mass of less than 20 kDa, such as caffeine, but not ß-estradiol and FD-20. Furthermore, we analyzed the intrinsic capacity of candesartan to diffuse through the fresh porcine buccal mucosa under two pH conditions. The concentration of candesartan in the receptor chamber of Franz diffusion cell was quantified using ultra-high liquid chromatography. In the permeation assay, candesartan exhibited a low intrinsic permeation capacity that impacted the buccal tissue viability and integrity, suggesting that using the buccal mucosa as an alternative route of administration requires developing a pharmaceutical formulation that reduces the adverse effects on mucosa and increasing the buccal permeability of candesartan.


Asunto(s)
Cafeína , Mucosa Bucal , Porcinos , Animales , Supervivencia Tisular , Estradiol , Permeabilidad , Administración Bucal
8.
Phytochem Anal ; 23(3): 232-9, 2012.
Artículo en Inglés | MEDLINE | ID: mdl-21858882

RESUMEN

INTRODUCTION: Leaves and fruits of Passiflora species are widely used around the world in popular medicine, mainly as sedatives and tranquilisers. C-glycosyl flavonoids are the main components of these species. OBJECTIVE: To investigate the constituent patterns and to develop a chromatographic method for the characterisation of the C-glycosyl flavonoids profile of the extracts of the leaves and the pericarp of South American Passiflora species. METHODOLOGY: The chemical composition of extracts from the leaves and the fruits' pericarp of Passiflora edulis var. flavicarpa, P. edulis var. edulis, Passiflora alata, Passiflora tripartita var. mollissima, Passiflora quadrangularis, Passiflora manicata and Passiflora ligularis was evaluated for the presence of C-glycosyl flavonoids. Two separate HPLC methods were developed suitable for a diode array detector (DAD) and a MS detector. Separation by HPLC-DAD was achieved on a Luna C-18 column, using solvent A (tetrahydrofuran-isopropanol-acetonitrile) and solvent B (H3PO4 0.5%) in an isocratic elution mode. In the HPLC-MS, the components were separated on a Luna RP-18A column by a gradient elution (water-acetonitrile-formic acid). RESULTS: The presence of C-glycosyl flavonoids was identified in leaves and pericarp of P. edulis var. flavicarpa, P. alata, P. edulis var. edulis and P. tripartita var. molissima, but only in leaf extracts of P. quadrangularis and P. manicata and not at all in P. ligularis. The different species and varieties showed different major constituents. The C-glycosyl flavonoids identified more frequently were orientin, isoorientin, vitexin and isovitexin. CONCLUSION: The methods established are simple and can be used as a tool for the characterisation and quality control of pharmaceutical preparations containing these Passiflora extracts.


Asunto(s)
Cromatografía Líquida de Alta Presión/métodos , Flavonoides/análisis , Glicósidos/análisis , Passiflora/química , Hojas de la Planta/química , Flavonoides/química , Frutas/química , Geografía , Glicósidos/química , Espectrometría de Masas/métodos , Estructura Molecular , Passiflora/clasificación , Reproducibilidad de los Resultados , Solventes/química , América del Sur , Especificidad de la Especie
9.
Bioorg Med Chem Lett ; 21(19): 5888-91, 2011 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-21865038

RESUMEN

The screen of 10 soft coral extracts collected from the Colombian Caribbean Sea in the TPA-induced ear edema model allowed us to identify Eunicea fusca extract among others as an interesting source of active compounds. The new diterpene, fuscoside E (1), along with the known fuscoside B (2), fuscol (3), (+)-germacrene D (4) and a mixture of six sterols (5-10), were isolated from this soft coral. Their structures were elucidated by 1D and 2D NMR spectroscopy techniques. Fuscoside E (1) absolute stereochemistry was determined by chiroptical methods. Fuscoside E (1) and B (2) showed strong anti-inflammatory in the above mentioned bioassay. Additionally, fuscoside E (1) and the sterol mixture (5-10) presented antifouling activity against bacterial strains involved in surface colonization.


Asunto(s)
Antozoos , Antibacterianos/química , Antibacterianos/farmacología , Antiinflamatorios no Esteroideos/química , Antiinflamatorios no Esteroideos/farmacología , Diterpenos/química , Diterpenos/farmacología , Edema/tratamiento farmacológico , Glicósidos/química , Glicósidos/farmacología , Animales , Antibacterianos/aislamiento & purificación , Antiinflamatorios no Esteroideos/aislamiento & purificación , Bacillus/efectos de los fármacos , Bioensayo , Productos Biológicos/química , Productos Biológicos/aislamiento & purificación , Productos Biológicos/farmacología , Región del Caribe , Modelos Animales de Enfermedad , Diterpenos/aislamiento & purificación , Descubrimiento de Drogas , Evaluación Preclínica de Medicamentos , Oído , Edema/inducido químicamente , Glicósidos/aislamiento & purificación , Ratones , Pruebas de Sensibilidad Microbiana , Conformación Molecular , Estructura Molecular , Estereoisomerismo , Vibrio/efectos de los fármacos
10.
Z Naturforsch C J Biosci ; 66(9-10): 515-26, 2011.
Artículo en Inglés | MEDLINE | ID: mdl-22191218

RESUMEN

The growth inhibition of 12 native marine bacteria isolated from Aplysina sponge surfaces, the shell of a bivalve, and Phytagel immersed for 48 h in sea water were used as indicator of the antifouling activity of the extracts of 39 marine organisms (octocorals, sponges, algae, and zoanthid) collected in the Colombian Caribbean Sea and on the Brazilian coast (Santa Catarina). Gram-negative bacteria represented 75% of the isolates; identified strains belonged to Oceanobacillus iheyensis, Ochrobactrum pseudogrignonense, Vibrio campbellii, Vibrio harveyi, and Bacillus megaterium species and seven strains were classified at genus level by the 16S rRNA sequencing method. The extracts of the octocorals Pseudopterogorgia elisabethae, four Eunicea octocorals, and the sponges Topsentia ophiraphidites, Agelas citrina, Neopetrosia carbonaria, Monanchora arbuscula, Cliona tenuis, Iotrochota imminuta, and Ptilocaulis walpersii were the most active, thus suggesting those species as antifoulant producers. This is the first study of natural antifoulants from marine organisms collected on the Colombian and Brazilian coasts.


Asunto(s)
Fenómenos Fisiológicos Bacterianos , Invertebrados/fisiología , Biología Marina , Animales , Brasil , Colombia , Especificidad de la Especie , Indias Occidentales
11.
J Pharm Pharmacol ; 73(11): 1530-1538, 2021 Oct 07.
Artículo en Inglés | MEDLINE | ID: mdl-34436599

RESUMEN

OBJECTIVES: The objective of this work was to evaluate the anti-inflammatory activity of the aqueous extract, fractions and major compounds, which are isolated and identified from Passiflora edulis f. edulis (purple passion fruit) leaves extract. METHODS: For the isolation of the major compounds, reversed-phase chromatography and normal phase countercurrent chromatography were used. The separation was followed by thin layer chromatography and HPLC-DAD-ELSD. One-dimensional and two-dimensional NMR and ESI-TOF-MS/MS were used for structural elucidation. The anti-inflammatory activity was evaluated on a TPA multiple dose model of skin chronic inflammation in mice. Additionally, myeloperoxidase (MPO) and nitric oxide synthase (NOS) activity assays were performed as possible mechanisms of action studies. KEY FINDINGS AND CONCLUSIONS: The study of the butanolic fraction mainly showed the presence of saponins and flavonoids. Three minor flavonoids were detected; and three known saponins, cyclopassiflosides IX, XI and III were isolated and identified. This is the first unequivocal report of the presence of these compounds in P. edulis f. edulis leaves. The most favourable results of anti-inflammatory activity were obtained for the flavonoid-rich fraction. All the fractions and isolated compounds evaluated, presented high percentages of inhibition of nitric oxide synthase activity.


Asunto(s)
Antiinflamatorios/uso terapéutico , Flavonoides/uso terapéutico , Inflamación/prevención & control , Passiflora/química , Fitoterapia , Saponinas/uso terapéutico , Piel/efectos de los fármacos , Animales , Antiinflamatorios/farmacología , Cromatografía Líquida de Alta Presión , Femenino , Flavonoides/análisis , Flavonoides/farmacología , Inflamación/inducido químicamente , Inflamación/metabolismo , Ratones Endogámicos ICR , Óxido Nítrico Sintasa/antagonistas & inhibidores , Extractos Vegetales/química , Extractos Vegetales/farmacología , Extractos Vegetales/uso terapéutico , Hojas de la Planta/química , Saponinas/aislamiento & purificación , Saponinas/farmacología , Enfermedades de la Piel/metabolismo , Enfermedades de la Piel/prevención & control , Espectrometría de Masas en Tándem , Acetato de Tetradecanoilforbol/análogos & derivados
12.
J Agric Food Chem ; 69(9): 2919-2931, 2021 Mar 10.
Artículo en Inglés | MEDLINE | ID: mdl-33621072

RESUMEN

The leaves of Passiflora ligularis Juss (known as sweet granadilla for its edible fruits) are a crop byproduct that is discarded. With the aim of contributing to give value-added products from these crop by-side products to farmers of Colombian Andes, we carried out a 1H-NMR-metabolomics analysis of polar extracts from leaves collected in three locations and stored in two conditions in order to identify glucosyl-hydrolase inhibitors. Variations in the metabolic profile and the bioactivity among samples were analyzed by orthogonal partial least square discriminant analysis. Thus, 1H-NMR signals related to polyphenolic compounds, saponins, and amino acids were correlated with higher inhibitory activities. Moreover, a targeted NMR and HPLC-MS/MS analysis allowed the identification of 14 polyphenolic compounds and the structural characterization of a new triterpenoid saponin, ligularoside A. The measurements of IC50 values for α-amylase and α-glycosidase inhibitors allowed the identification of quercetin-3-O-ß-glucoside, kaempferol-3-O-ß-glucoside, and ligularoside A as the most active compounds. These results suggest that P. ligularis leaves are a source of glucosyl-hydrolase inhibitors and lay the foundation for exploring additional applications.


Asunto(s)
Passiflora , Saponinas , Triterpenos , Inhibidores de Glicósido Hidrolasas , Espectroscopía de Resonancia Magnética , Metabolómica , Extractos Vegetales , Hojas de la Planta , Espectrometría de Masas en Tándem , alfa-Amilasas
13.
Chem Biol Drug Des ; 98(4): 507-521, 2021 10.
Artículo en Inglés | MEDLINE | ID: mdl-34143939

RESUMEN

Among the compounds of natural origin, diterpenes have proved useful as drugs for the treatment of cancer. Marine organisms, such as soft corals and algae, are a promising source of diterpenes, being a rich and unexplored source of cytotoxic agents. This study evaluated a library of 32 natural and semisynthetic marine diterpenes, including briarane, cembrane, and dolabellane nuclei, with the aim of determining their cytotoxicity against three human cancer cell lines (A549, MCF7, and PC3). The three most active compounds were submitted to a flow cytometry analysis in order to determine induction of apoptosis against the A549 cell line. An NMR analysis was conducted to determine and evaluate the interactions between active diterpenes and tubulin. These interactions were characterized by a computational study using molecular docking and MD simulations. With these results, two cembrane and one chlorinated briarane diterpenes were active against the three human cancer cell lines, induced apoptosis in the A549 cell line, and showed interactions with tubulin preferably at the taxane-binding site. This study is a starting point for the identification and optimization of the marine diterpenes selected for better antitumor activities. It also highlights the power of integrating NMR studies, computational predictions, and in vitro assays in the search for compounds with antitumor activity.


Asunto(s)
Antozoos/química , Antineoplásicos/química , Productos Biológicos/química , Mezclas Complejas/química , Diterpenos/química , Bibliotecas de Moléculas Pequeñas/química , Animales , Antineoplásicos/farmacología , Apoptosis/efectos de los fármacos , Productos Biológicos/farmacología , Línea Celular Tumoral , Mezclas Complejas/farmacología , Biología Computacional , Diterpenos/farmacología , Ensayos de Selección de Medicamentos Antitumorales , Halogenación , Humanos , Espectroscopía de Resonancia Magnética , Modelos Moleculares , Bibliotecas de Moléculas Pequeñas/farmacología , Relación Estructura-Actividad
14.
Phytochemistry ; 172: 112272, 2020 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-32032827

RESUMEN

Banana passion fruit of the Passiflora genus, are commercially cultivated on a small to medium scale, mainly as edible fruits or as components of traditional herbal medicines. This subgenus comprises several species and hybrid specimens that grow readily in the wild. Due to their taxonomical complexity, many of these species have recently been reclassified (Ocampo Pérez and Coppens d'Eeckenbrugge, 2017), and their chemical profile has still to be determined. In this study, an 1H NMR-based platform was applied to the chemical profiling of seven wild species of the Passiflora subgenus, and UHPLC-DAD-MS was additionally used for the identification of phenolic compounds. A total of 59 compounds were detected including 26 O- and C-glycosidated flavonoids and polyphenols, nine organic acids, seven amino acids, GABA, sucrose, glucose, myo-inositol, and five other non-identified compounds. Two of the identified compounds are the previously undescribed C-glycosyl flavonoids, apigenin-4'-O-ß-glucopyranosyl, 8-C-ß-(6″acetyl)-glucopyranoside and apigenin-4-O-ß-glucopyranosyl-8-C-ß-neohesperidoside. These C-glycosyl flavonoids were isolated to confirm their proposed structures by NMR and LCMS analysis. The PCA score plots obtained from the 1H NMR data of the studied Passiflora samples showed P. cumbalensis and P. uribei as the species with the most distinguishable chemical profile. In addition, a correlation analysis using OPLS-DA was conducted between 1H-NMR data and the quorum quenching activity (QQ) of Chromobacterium violaceum ATCC 31532. This analysis revealed P. lehmannii, and P. uribei extracts to be the most active, and apigenin-4'-O-ß-glucopyranosyl, 8-C-ß-(6″acetyl)-glucopyranoside and apigenin-4-O-ß-glucopyranosyl-8-C-ß-neohesperidoside were identified as possibly responsible for the QQ activity. To confirm this, QQ activity of both compounds was tested against C. violaceum ATCC 3153. An inhibition of violacein production of 0.135 mM (100 µg/mL) and 0.472 mM (300 µg/mL) was observed for apigenin-4'-O-ß-glucopyranosyl,8-C-ß-(6″acetyl)-glucopyranoside and apigenin-4-O-ß-glucopyranosyl-8-C-ß-neohesperidoside respectively, while bacterial growth was unaffected in both cases. Furthermore, both compounds showed the ability to inhibit the production of the toxoflavin of the phytopathogen Burkholderia glumae ATCC 33617.


Asunto(s)
Musa , Passiflora , Flavonoides , Frutas , Percepción de Quorum
15.
Microbiol Res ; 239: 126507, 2020 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-32563122

RESUMEN

Actinobacteria are the major source of bioactive secondary metabolites and are featured in the search for antimicrobial compounds. We used nuclear magnetic resonance (RMN)-metabolic profiling and multivariate data analysis (MVDA) to correlate the metabolites' production of Streptomyces sp. PNM-9 from the algae Dictyota sp. and their biological activity against the rice phytopathogenic bacteria Burkholderia spp. The compounds 2-methyl-N-(2'-phenylethyl)-butanamide (1) and 3-methyl-N-(2'-phenylethyl)-butanamide (2) were identified through MVDA and 2D NMR experiments in the organic extract of a 15-days LB media culture of Streptomyces sp. PNM-9. Compounds 1 and 2 were isolated and their structures confirmed by one- and two-dimensional NMR and mass spectrometry (MS) data. Compounds 1 and 2 were active against the rice pathogenic bacteria Burkholderia glumae (ATCC 33,617) displaying minimal inhibitory concentration (MIC) values of 2.43 mM and 1.21 mM, respectively. The metabolomics-guided approach employing NMR-metabolic profiling was useful for marine microbial bioprospecting and suggested Streptomyces sp. PNM-9 strain and its compounds as a potential control against phytopathogenic bacteria.


Asunto(s)
Antibacterianos/farmacología , Burkholderia/efectos de los fármacos , Medios de Cultivo/farmacología , Metabolómica/métodos , Streptomyces/química , Amidas/química , Amidas/farmacología , Antibacterianos/aislamiento & purificación , Organismos Acuáticos/química , Bioprospección , Burkholderia/patogenicidad , Medios de Cultivo/química , Espectroscopía de Resonancia Magnética , Pruebas de Sensibilidad Microbiana , Enfermedades de las Plantas/microbiología , Enfermedades de las Plantas/prevención & control
16.
Sci Rep ; 9(1): 10791, 2019 07 25.
Artículo en Inglés | MEDLINE | ID: mdl-31346188

RESUMEN

A search for extremophile organisms producing bioactive compounds led us to isolate a microalga identified as Galdieria sp. USBA-GBX-832 from acidic thermal springs. We have cultured Galdieria sp. USBA-GBX-832 under autotrophic, mixotrophic and heterotrophic conditions and determined variations of its production of biomass, lipids and PUFAs. Greatest biomass and PUFA production occurred under mixotrophic and heterotrophic conditions, but the highest concentration of lipids occurred under autotrophic conditions. Effects of variations of carbon sources and temperature on biomass and lipid production were evaluated and factorial experiments were used to analyze the effects of substrate concentration, temperature, pH, and organic and inorganic nitrogen on biomass production, lipids and PUFAs. Production of biomass and lipids was significantly dependent on temperature and substrate concentration. Greatest accumulation of PUFAs occurred at the lowest temperature tested. PUFA profiles showed trace concentrations of arachidonic acid (C20:4) and eicosapentaenoic acid (C20:5). This is the first time synthesis of these acids has been reported in Galdieria. These findings demonstrate that under heterotrophic conditions this microalga's lipid profile is significantly different from those observed in other species of this genus which indicates that the culture conditions evaluated are key determinants of these organisms' responses to stress conditions and accumulation of these metabolites.


Asunto(s)
Procesos Autotróficos , Biomasa , Ácidos Grasos Insaturados/biosíntesis , Procesos Heterotróficos , Microalgas/metabolismo , Carbono/metabolismo , Microbiología Industrial/métodos , Microalgas/crecimiento & desarrollo , Nitrógeno/metabolismo , Temperatura
17.
Front Microbiol ; 10: 290, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-30858835

RESUMEN

Bacterial Panicle Blight caused by Burkholderia glumae is a major disease of rice, which has dramatically affected rice production around the world in the last years. In this study we describe the assessment of three Streptomyces isolates as biocontrol agents for B. glumae. Additionally, the presence of other plant-growth promoting abilities and their possible beneficial effects upon their inoculation on rice plants was evaluated as an ecological analysis for their future inoculation in rice crops. Two isolates (A20 and 5.1) inhibited growth of virulent B. glumae strains, as well as a wide range of bacterial and fungal species, while a third strain (7.1) showed only antifungal activity. In vitro tests demonstrated the ability of these strains to produce siderophores, Indoleacetic acid (IAA), extracellular enzymes and solubilizing phosphate. Greenhouse experiments with two rice cultivars indicated that Streptomyces A20 is able to colonize rice plants and promote plant growth in both cultivars. Furthermore, an egfp tagged mutant was generated and colonization experiments were performed, indicating that Streptomyces A20 -GFP was strongly associated with root hairs, which may be related to the plant growth promotion observed in the gnotobiotic experiments. In order to characterize the antimicrobial compounds produced by strain A20 bacteria, mass spectrometry analyses were performed. This technique indicated that A20 produced several antimicrobial compounds with sizes below 3 kDa and three of these molecules were identified as Streptotricins D, E and F. These findings indicate the potential of Streptomyces A20 as a biocontrol inoculant to protect rice plants against bacterial diseases.

18.
J Antibiot (Tokyo) ; 72(10): 744-751, 2019 10.
Artículo en Inglés | MEDLINE | ID: mdl-31243345

RESUMEN

Two cyclotetrapeptides, henceforth named Provipeptides A (1) and B (2), along with five known diketopiperazines (3-7) were isolated from the liquid culture of marine Streptomyces sp. 161a recovered from a sample of sea grass Bryopsis sp. The structures of cyclotetrapeptides and diketopiperazines (DKPs) were established by 1D and 2D NMR data, MS, and by comparison with literature data. The absolute stereochemistry of compounds cyclo-(L-Pro-L-Leu-D-Pro-L-Phe) 1 and cyclo-(-Pro-Ile-Pro-Phe) 2 was established by the Marfey's method. Compound 1 showed antibacterial activity against rice phytopathogenic strains Burkholderia glumae (MIC = 1.1 mM) and Burkholderia gladioli (MIC = 0.068 mM), compound 2 was active only against B. glumae (MIC = 1.1 mM), and DKP cyclo-[L-Pro-L-Leu] 5 showed to be active against B. gladioli (MIC = 0.3 mM) and B. glumae (MIC = 2.4 mM). Compounds 1 and 2 showed 65% and 50% inhibition of Colletotrichum gloeosporioides (yam pathogen) conidia germination, respectively at a concentration of 1.1 mM.


Asunto(s)
Antiinfecciosos/aislamiento & purificación , Burkholderia/efectos de los fármacos , Colletotrichum/efectos de los fármacos , Medios de Cultivo/química , Oligopéptidos/aislamiento & purificación , Péptidos Cíclicos/aislamiento & purificación , Antiinfecciosos/farmacología , Dioscorea/microbiología , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Oligopéptidos/farmacología , Oryza/microbiología , Péptidos Cíclicos/farmacología , Análisis Espectral , Streptomyces/crecimiento & desarrollo , Streptomyces/metabolismo
19.
Carbohydr Res ; 461: 4-10, 2018 May 22.
Artículo en Inglés | MEDLINE | ID: mdl-29549750

RESUMEN

The fruit of Physalis peruviana is widely used in traditional Colombian medicine as an antidiabetic treatment. The aim of the study reported here was to identify the compounds responsible for the hypoglycemic activity using the α-amylase inhibition test. Bioguided fractionation of a dichloromethane extract of the sticky exudate that covers the fruit allowed the isolation and identification of three new sucrose esters, named as peruvioses C-E (1-3), along with the known peruvioses A (6), B (5) and F (4), the structures of which were elucidated by extensive NMR and MS experiments. These compounds proved to be responsible for the hypoglycemic activity observed in the extract. Peruviose D (2) showed the highest activity, with an inhibitory activity value of 84.8%. This is the first study to establish the potential of sucrose esters as α-amylase inhibitors and to explain the hypoglycemic effect that has traditionally been attributed to gooseberry fruit.


Asunto(s)
Inhibidores Enzimáticos/química , Inhibidores Enzimáticos/farmacología , Ésteres/química , Ésteres/farmacología , Frutas/química , Physalis/química , Exudados de Plantas/química , Exudados de Plantas/farmacología , Sacarosa/química , alfa-Amilasas/antagonistas & inhibidores , alfa-Amilasas/metabolismo , Espectroscopía de Resonancia Magnética , Espectrometría de Masas
20.
AMB Express ; 8(1): 35, 2018 03 09.
Artículo en Inglés | MEDLINE | ID: mdl-29523979

RESUMEN

The original version of this article (Diaz-Cardenas et al. 2017) unfortunately contained a mistake in Fig. 1. The pie chart of Fig. 1 should explain the distribution of the relative abundance of the Bacteria and Archaea strains isolated at Zipaquirá salt mine: Proteobacteria 39%; Actinobacteria 9%, Bacteroidetes 1%, Archaea 3% and Firmicutes 48% instead of NOMBRE DE CATEGORIA [PORCENTAJE]. The corrected Fig. 1 and caption are given below.

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