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1.
Cell ; 167(6): 1469-1480.e12, 2016 Dec 01.
Artículo en Inglés | MEDLINE | ID: mdl-27912057

RESUMEN

The intestinal microbiota influence neurodevelopment, modulate behavior, and contribute to neurological disorders. However, a functional link between gut bacteria and neurodegenerative diseases remains unexplored. Synucleinopathies are characterized by aggregation of the protein α-synuclein (αSyn), often resulting in motor dysfunction as exemplified by Parkinson's disease (PD). Using mice that overexpress αSyn, we report herein that gut microbiota are required for motor deficits, microglia activation, and αSyn pathology. Antibiotic treatment ameliorates, while microbial re-colonization promotes, pathophysiology in adult animals, suggesting that postnatal signaling between the gut and the brain modulates disease. Indeed, oral administration of specific microbial metabolites to germ-free mice promotes neuroinflammation and motor symptoms. Remarkably, colonization of αSyn-overexpressing mice with microbiota from PD-affected patients enhances physical impairments compared to microbiota transplants from healthy human donors. These findings reveal that gut bacteria regulate movement disorders in mice and suggest that alterations in the human microbiome represent a risk factor for PD.


Asunto(s)
Enfermedad de Parkinson/microbiología , Enfermedad de Parkinson/patología , Animales , Encéfalo/patología , Disbiosis/patología , Ácidos Grasos/metabolismo , Microbioma Gastrointestinal , Tracto Gastrointestinal/microbiología , Tracto Gastrointestinal/fisiopatología , Humanos , Inflamación/metabolismo , Inflamación/microbiología , Inflamación/patología , Ratones , Microglía/patología , Enfermedad de Parkinson/metabolismo , Enfermedad de Parkinson/fisiopatología , alfa-Sinucleína/metabolismo
2.
J Environ Manage ; 367: 121752, 2024 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-39067341

RESUMEN

Sustainable management of the Amazon rainforest is fundamental for supporting life on earth because of its crucial role in sequestering carbon. One of the species grown in the forest is açaí (Euterpe oleracea), which is an important food and income source for its inhabitant. The acai seed, resulting from the processing of the fruit, is a solid organic residue, which has been an agent of undesirable environmental impacts such as natural landscape modifications, clogging sewers and water courses, eutrophication of surface waters. In this research, we evaluated the use of wood chips as a source of energy in a rustic oven to produce acai biochar so that family farmers carry out sustainable management of the residue and use biochar to improve soil quality and produce seedlings of native plants to regenerate degraded forests. The experiment was conducted in Pará, Brazil, Amazon region, using a randomized complete block design. A factorial treatment structure was implemented consisting of four biochar particle sizes (3, 5, 7, and 12 mm), 4 application rates (4, 8, 16, and 32 t ha-1), and a biochar-free control, with 5 replications. The results showed that the methodology for biochar production was easy to apply and low cost, allowing its use by family farmers. The combination of biochar rate and particle size affected soil properties and the development of black pepper seedlings in different ways. The soil properties affected were water retention capacity, moisture, fluorescein diacetate hydrolysis and arylsulphatase activity. The growth parameters of the affected black pepper seedlings were height and root system development.


Asunto(s)
Carbón Orgánico , Plantones , Semillas , Suelo , Suelo/química , Plantones/crecimiento & desarrollo , Semillas/crecimiento & desarrollo , Brasil , Piper nigrum
3.
Microb Ecol ; 85(4): 1423-1433, 2023 May.
Artículo en Inglés | MEDLINE | ID: mdl-35525854

RESUMEN

Plants modulate the soil microbiota and select a specific microbial community in the rhizosphere. However, plant domestication reduces genetic diversity, changes plant physiology, and could have an impact on the associated microbiome assembly. Here, we used 16S rRNA gene sequencing to assess the microbial community in the bulk soil and rhizosphere of wild, semi-domesticated, and domesticated genotypes of lima bean (Phaseolus lunatus), to investigate the effect of plant domestication on microbial community assembly. In general, rhizosphere communities were more diverse than bulk soil, but no differences were found among genotypes. Our results showed that the microbial community's structure was different from wild and semi-domesticated as compared to domesticated genotypes. The community similarity decreased 57.67% from wild to domesticated genotypes. In general, the most abundant phyla were Actinobacteria (21.9%), Proteobacteria (20.7%), Acidobacteria (14%), and Firmicutes (9.7%). Comparing the different genotypes, the analysis showed that Firmicutes (Bacillus) was abundant in the rhizosphere of the wild genotypes, while Acidobacteria dominated semi-domesticated plants, and Proteobacteria (including rhizobia) was enriched in domesticated P. lunatus rhizosphere. The domestication process also affected the microbial community network, in which the complexity of connections decreased from wild to domesticated genotypes in the rhizosphere. Together, our work showed that the domestication of P. lunatus shaped rhizosphere microbial communities from taxonomic to a functional level, changing the abundance of specific microbial groups and decreasing the complexity of interactions among them.


Asunto(s)
Microbiota , Phaseolus , Phaseolus/genética , Phaseolus/microbiología , Raíces de Plantas/microbiología , Rizosfera , Domesticación , ARN Ribosómico 16S/genética , Microbiota/genética , Proteobacteria/genética , Plantas , Acidobacteria/genética , Suelo/química , Microbiología del Suelo
4.
Proc Natl Acad Sci U S A ; 117(45): 27997-28004, 2020 11 10.
Artículo en Inglés | MEDLINE | ID: mdl-33093204

RESUMEN

Amyloid formation involves the conversion of soluble protein species to an aggregated state. Amyloid fibrils of ß-parvalbumin, a protein abundant in fish, act as an allergen but also inhibit the in vitro assembly of the Parkinson protein α-synuclein. However, the intrinsic aggregation mechanism of ß-parvalbumin has not yet been elucidated. We performed biophysical experiments in combination with mathematical modeling of aggregation kinetics and discovered that the aggregation of ß-parvalbumin is initiated by the formation of dimers stabilized by disulfide bonds and then proceeds via primary nucleation and fibril elongation processes. Dimer formation is accelerated by H2O2 and hindered by reducing agents, resulting in faster and slower aggregation rates, respectively. Purified ß-parvalbumin dimers readily assemble into amyloid fibrils with similar morphology as those formed when starting from monomer solutions. Furthermore, addition of preformed dimers accelerates the aggregation reaction of monomers. Aggregation of purified ß-parvalbumin dimers follows the same kinetic mechanism as that of monomers, implying that the rate-limiting primary nucleus is larger than a dimer and/or involves structural conversion. Our findings demonstrate a folded protein system in which spontaneously formed intermolecular disulfide bonds initiate amyloid fibril formation by recruitment of monomers. This dimer-induced aggregation mechanism may be of relevance for human amyloid diseases in which oxidative stress is often an associated hallmark.


Asunto(s)
Amiloide/metabolismo , Parvalbúminas/metabolismo , Multimerización de Proteína/fisiología , Amiloide/química , Proteínas Amiloidogénicas/metabolismo , Amiloidosis/metabolismo , Animales , Dimerización , Disulfuros , Gadus morhua/metabolismo , Peróxido de Hidrógeno/química , Cinética , Modelos Moleculares , Conformación Proteica , Pliegue de Proteína
5.
Proc Natl Acad Sci U S A ; 117(47): 29677-29683, 2020 11 24.
Artículo en Inglés | MEDLINE | ID: mdl-33168711

RESUMEN

Yeast prions provide self-templating protein-based mechanisms of inheritance whose conformational changes lead to the acquisition of diverse new phenotypes. The best studied of these is the prion domain (NM) of Sup35, which forms an amyloid that can adopt several distinct conformations (strains) that confer distinct phenotypes when introduced into cells that do not carry the prion. Classic dyes, such as thioflavin T and Congo red, exhibit large increases in fluorescence when bound to amyloids, but these dyes are not sensitive to local structural differences that distinguish amyloid strains. Here we describe the use of Michler's hydrol blue (MHB) to investigate fibrils formed by the weak and strong prion fibrils of Sup35NM and find that MHB differentiates between these two polymorphs. Quantum mechanical time-dependent density functional theory (TDDFT) calculations indicate that the fluorescence properties of amyloid-bound MHB can be correlated to the change of binding site polarity and that a tyrosine to phenylalanine substitution at a binding site could be detected. Through the use of site-specific mutants, we demonstrate that MHB is a site-specific environmentally sensitive probe that can provide structural details about amyloid fibrils and their polymorphs.


Asunto(s)
Compuestos de Anilina/química , Compuestos de Bencidrilo/química , Priones/química , Amiloide/química , Sitios de Unión , Rojo Congo/química , Fluorescencia , Proteínas Fúngicas/química , Factores de Terminación de Péptidos/química , Dominios Proteicos , Levaduras/química
6.
Proc Natl Acad Sci U S A ; 117(25): 14178-14186, 2020 06 23.
Artículo en Inglés | MEDLINE | ID: mdl-32513706

RESUMEN

The interaction of the neuronal protein α-synuclein with lipid membranes appears crucial in the context of Parkinson's disease, but the underlying mechanistic details, including the roles of different lipids in pathogenic protein aggregation and membrane disruption, remain elusive. Here, we used single-vesicle resolution fluorescence and label-free scattering microscopy to investigate the interaction kinetics of monomeric α-synuclein with surface-tethered vesicles composed of different negatively charged lipids. Supported by a theoretical model to account for structural changes in scattering properties of surface-tethered lipid vesicles, the data demonstrate stepwise vesicle disruption and asymmetric membrane deformation upon α-synuclein binding to phosphatidylglycerol vesicles at protein concentrations down to 10 nM (∼100 proteins per vesicle). In contrast, phosphatidylserine vesicles were only marginally affected. These insights into structural consequences of α-synuclein interaction with lipid vesicles highlight the contrasting roles of different anionic lipids, which may be of mechanistic relevance for both normal protein function (e.g., synaptic vesicle binding) and dysfunction (e.g., mitochondrial membrane interaction).


Asunto(s)
Lípidos de la Membrana/metabolismo , Membranas/metabolismo , alfa-Sinucleína/metabolismo , Fluoresceínas , Humanos , Cinética , Membrana Dobles de Lípidos/química , Proteínas del Tejido Nervioso/química , Neuronas/metabolismo , Enfermedad de Parkinson/metabolismo , Fosfatidilgliceroles/química , Unión Proteica , alfa-Sinucleína/genética
7.
Int J Mol Sci ; 24(7)2023 Apr 02.
Artículo en Inglés | MEDLINE | ID: mdl-37047621

RESUMEN

The Six Transmembrane Epithelial Antigen of the Prostate 1 (STEAP1) protein has been indicated as an overexpressed oncoprotein in prostate cancer (PCa), associated with tumor progression and aggressiveness. Taxane-based antineoplastic drugs such as paclitaxel, docetaxel, or cabazitaxel, have been investigated in PCa treatment, namely for the development of combined therapies with the improvement of therapeutic effectiveness. This study aimed to evaluate the expression of STEAP1 in response to taxane-based drugs and assess whether the sensitivity of PCa cells to treatment with paclitaxel, docetaxel, or cabazitaxel may change when the STEAP1 gene is silenced. Thus, wild-type and STEAP1 knockdown LNCaP and C4-2B cells were exposed to paclitaxel, docetaxel or cabazitaxel, and STEAP1 expression, cell viability, and survival pathways were evaluated. The results obtained showed that STEAP1 knockdown or taxane-based drugs treatment significantly reduced the viability and survival of PCa cells. Relatively to the expression of proliferation markers and apoptosis regulators, LNCaP cells showed a reduced proliferation, whereas apoptosis was increased. However, the effect of paclitaxel, docetaxel, or cabazitaxel treatment was reversed when combined with STEAP1 knockdown. Besides, these chemotherapeutic drugs may stimulate the cell growth of PCa cells knocked down for STEAP1. In conclusion, this study demonstrated that STEAP1 expression levels might influence the response of PCa cells to chemotherapeutics drugs, indicating that the use of paclitaxel, docetaxel, or cabazitaxel may lead to harmful effects in PCa cells with decreased expression of STEAP1.


Asunto(s)
Antineoplásicos , Neoplasias de la Próstata , Masculino , Humanos , Docetaxel/farmacología , Docetaxel/uso terapéutico , Paclitaxel/farmacología , Paclitaxel/uso terapéutico , Próstata/patología , Línea Celular Tumoral , Taxoides/farmacología , Taxoides/uso terapéutico , Neoplasias de la Próstata/tratamiento farmacológico , Neoplasias de la Próstata/genética , Neoplasias de la Próstata/metabolismo , Antineoplásicos/farmacología , Antineoplásicos/uso terapéutico , Antígenos de Neoplasias/uso terapéutico , Oxidorreductasas
8.
Cell Microbiol ; 23(9): e13350, 2021 09.
Artículo en Inglés | MEDLINE | ID: mdl-33938125

RESUMEN

Toll-like receptors (TLRs) are a class of membrane-spanning proteins of host cells. TLR2 and TLR4 are displayed on the surface of macrophages, neutrophils and dendritic cells and recognise structurally conserved microbial signatures defined as Pathogen associated molecular patterns (PAMPs). C3H mice are susceptible to tick-borne pathogens; Lyme disease causing Borrelia burgdorferi that manifests arthritis and carditis and Apicomplexan protozoan, Babesia microti (Bm) that causes significant parasitemia associated with erythrocytopenia and haemoglobinuria. B. burgdorferi lacks typical TLR4 ligand lipopolysaccharides (LPS) and Bm TLR ligand(s) remain unknown. Only Borrelia lipoproteins that signal through TLR2 are established as PAMPs of these pathogens for TLR2/TLR4. Infection of C3H mice with each pathogen individually resulted in increase in the percentage of splenic B, T and FcR+ cells while their co-infection significantly diminished levels of these cells and caused increased B. burgdorferi burden in the specific organs. The most pronounced inflammatory arthritis was observed in co-infected C3H/HeJ mice. Parasitemia levels and kinetics of resolution of Bm in both mice strains were not significantly different. Transfected HEK293 cells showed pronounced signalling by B. burgdorferi through TLR2 and to some extent by TLR4 while Bm and infected erythrocytes did not show any response confirming our results in mice.


Asunto(s)
Babesia microti , Babesiosis , Borrelia burgdorferi , Enfermedad de Lyme , Animales , Células HEK293 , Humanos , Ratones , Ratones Endogámicos C3H , Receptor Toll-Like 4/genética
9.
Arch Microbiol ; 204(12): 730, 2022 Nov 25.
Artículo en Inglés | MEDLINE | ID: mdl-36434407

RESUMEN

Bacteria have potential to tolerate and reduce metals. This study evaluated the potential of selected bacterial strains in tolerating and reducing chromium (Cr). Six bacterial strains (Rhizobium miluonense LCC01, LCC04, LCC05, and LCC69; Rhizobium pusense LCC43; and Agrobacterium deltaense LCC50) showed tolerance to Cr(VI) (16 and 32 µg mL-1), reduction potential of Cr(VI) (from 50 to 80%), and efficiency in producing exopolysaccharides. Rhizobium pusense LCC43 exhibited the highest tolerance (128 µg mL-1), reduction potential of Cr(VI) (from 80 to 100%), and efficiency in producing exopolysaccharides. These results suggested that this strain may have the potential to be used in the bioremediation of soils contaminated with Cr(VI).


Asunto(s)
Bacterias , Cromo , Oxidación-Reducción , Bacterias/genética
10.
Mol Biol Rep ; 49(8): 7731-7741, 2022 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-35716291

RESUMEN

BACKGROUND: The human Amniotic Membrane (hAM) has been studied as a potential therapeutic option in cancer, namely in hepatocellular carcinoma. Previously, our research group evaluated the effect of human Amniotic Membrane Protein Extracts (hAMPE) in cancer therapy, demonstrating that hAMPE inhibit the metabolic activity of human hepatocellular carcinoma cell lines: Hep3B2.1-7, HepG2 and Huh7. Therefore, and considering the close relationship between metabolic activity and oxidative stress, the aim of this study was to evaluate the effect of hAMPE treatment in glucose metabolism and its role in oxidative stress of hepatocellular carcinoma. METHODS AND RESULTS: Glucose uptake and lactate production was assessed by 1 H-NMR, and the expression of several mediators of the glycolytic pathway was evaluated by Western blot or fluorescence. Total antioxidant capacity (TAC) and biomarkers of oxidative stress effects in proteins were detected. Our results showed that hAMPE treatment increased glucose consumption on Hep3B2.1-7, HepG2, and Huh7 through the increase of GLUT1 in Hep3B2.1-7 and Huh7, and GLUT3 in HepG2 cells. It was observed an increased expression of 6-phosphofrutokinase (PFK-1L) in all cell lines though glucose was not converted to lactate on HepG2 and Huh7 cells, suggesting that hAMPE treatment may counteract the Warburg effect observed in carcinogenesis. In Hep3B2.1-7, hAMPE treatment induced an increase in expression of lactate dehydrogenase (LDH) and monocarboxylate transporter isoform 4 (MCT4). We further detected that hAMPE enhances the TAC of culture media after 2 and 8 h. This was followed by a degree of protection against proteins nitration and carbonylation. CONCLUSIONS: Overall, this work highlights the potential usefulness of hAMPE as anticancer therapy through the modulation of the glycolytic and oxidative profile in human hepatocellular carcinoma.


Asunto(s)
Carcinoma Hepatocelular , Neoplasias Hepáticas , Amnios/química , Amnios/metabolismo , Biomarcadores/metabolismo , Carcinoma Hepatocelular/metabolismo , Línea Celular Tumoral , Glucosa/metabolismo , Glucólisis , Humanos , Ácido Láctico/metabolismo , Neoplasias Hepáticas/metabolismo , Estrés Oxidativo
11.
An Acad Bras Cienc ; 94(1): e20200457, 2022.
Artículo en Inglés | MEDLINE | ID: mdl-35043847

RESUMEN

The assessment of ecosystem functions in Cerrado is important to implement practices of conservation. Recently, a 'rapid ecosystem function assessment' (REFA) for measuring ecosystem functions has been proposed and tested as a suitable method. Thus, this study aimed to assess the proxies of ecosystem functions of three physiognomies of Cerrado through REFA. This method was applied in three different preserved physiognomies of Cerrado from Northeastern, Brazil, namely: Campo Graminoide (CG), Cerrado Stricto Sensu (CSS), and Cerradão (CD). All proxies for the selected ecosystem functions differed between sites and seasons. The above- and belowground primary productivity and microbial biomass C were higher in CD than in CSS and CG. The above- and belowground secondary productivity and decomposition were higher and similar in CD and CSS as compared to CG. The principal component analysis explained 89.8% of the data variation and clustered the majority of ecosystem functions with CD, in both seasons and CSS in the wet season. The proxies of ecosystem functions measured through REFA showed differences between the physiognomies of Cerrado. Since each physiognomy of Cerrado presents different plant richness and diversity, and soil conditions, these characteristics contribute to influencing multiple ecosystem functions.


Asunto(s)
Ecosistema , Fisiognomía , Biomasa , Brasil , Suelo , Microbiología del Suelo
12.
J Am Chem Soc ; 143(45): 18899-18906, 2021 11 17.
Artículo en Inglés | MEDLINE | ID: mdl-34748321

RESUMEN

The neuronal protein α-synuclein, linked to Parkinson's disease, binds to negatively charged vesicles adopting a partial α-helix structure, but helix arrangement at the vesicle surface is not fully understood. Using linear dichroism spectroscopy (LD), we study the interaction of monomeric α-synuclein with large unilamellar vesicles of 1,2-dioleoyl-sn-glycero-3-phospho-l-serine (DOPS), 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-l-serine (POPS), and 1,2-dioleoyl-sn-glycero-3-phospho-(1'-rac-glycerol) (DOPG) under mild shear flow. The LD data of oriented lipid vesicles show that the long axis of the protein helix is oriented preferentially perpendicular to the membrane normal but deviates from a uniform in-plane distribution. Upon initial binding, a fraction of helices are oriented in the direction of least curvature for all ellipsoid-shaped vesicles at a lipid:protein molar ratio of 100. However, at a lower protein concentration the helices distribute uniformly on DOPS and POPS vesicles. In all cases, the α-synuclein helices rearrange with time (minute time scale) in the shear flow and begin to tilt into the vesicle membrane. Faster reorientation kinetics in the presence of flow suggests that modulation of membrane dynamics, by thermal or shear-dynamic activation, may overcome steric barriers by what may be called "flow catalysis".


Asunto(s)
Liposomas Unilamelares/metabolismo , alfa-Sinucleína/metabolismo , Secuencia de Aminoácidos , Fosfatidilgliceroles/química , Fosfatidilserinas/química , Unión Proteica , Conformación Proteica en Hélice alfa , Liposomas Unilamelares/química , alfa-Sinucleína/química
13.
Biochem Biophys Res Commun ; 568: 43-47, 2021 09 03.
Artículo en Inglés | MEDLINE | ID: mdl-34175689

RESUMEN

Parkinson's disease (PD) is linked to aggregation of the protein α-synuclein (aS) into amyloid fibers. aS is proposed to regulate synaptic activity and may also play a role in gene regulation via interaction with DNA in the cell nucleus. Here, we address the role of the negatively-charged C-terminus in the interaction between aS and DNA using single-molecule techniques. Using nanofluidic channels, we demonstrate that truncation of the C-terminus of aS induces differential effects on DNA depending on the extent of the truncation. The DNA extension increases for full-length aS and the (1-119)aS variant, but decreases about 25% upon binding to the (1-97)aS variant. Atomic force microscopy imaging showed full protein coverage of the DNA at high aS concentration. The characterization of biophysical properties of DNA when in complex with aS variants may provide important insights into the role of such interactions in PD, especially since C-terminal aS truncations have been found in clinical samples from PD patients.


Asunto(s)
ADN/metabolismo , alfa-Sinucleína/metabolismo , Secuencia de Aminoácidos , ADN/química , Humanos , Conformación de Ácido Nucleico , Enfermedad de Parkinson/metabolismo , Agregación Patológica de Proteínas/metabolismo , Dominios Proteicos , alfa-Sinucleína/química
14.
Int J Mol Sci ; 22(18)2021 Sep 16.
Artículo en Inglés | MEDLINE | ID: mdl-34576175

RESUMEN

BACKGROUND: The STEAP1 is a cell-surface antigen over-expressed in prostate cancer, which contributes to tumor progression and aggressiveness. However, the molecular mechanisms underlying STEAP1 and its structural determinants remain elusive. METHODS: The fraction capacity of Butyl- and Octyl-Sepharose matrices on LNCaP lysates was evaluated by manipulating the ionic strength of binding and elution phases, followed by a Co-Immunoprecipitation (Co-IP) polishing. Several potential stabilizing additives were assessed, and the melting temperature (Tm) values ranked the best/worst compounds. The secondary structure of STEAP1 was identified by circular dichroism. RESULTS: The STEAP1 was not fully captured with 1.375 M (Butyl), in contrast with interfering heterologous proteins, which were strongly retained and mostly eluted with water. This single step demonstrated higher selectivity of Butyl-Sepharose for host impurities removal from injected crude samples. Co-IP allowed recovering a purified fraction of STEAP1 and contributed to unveil potential physiologically interacting counterparts with the target. A Tm of ~55 °C was determined, confirming STEAP1 stability in the purification buffer. A predominant α-helical structure was identified, ensuring the protein's structural stability. CONCLUSIONS: A method for successfully isolating human STEAP1 from LNCaP cells was provided, avoiding the use of detergents to achieve stability, even outside a membrane-mimicking environment.


Asunto(s)
Antígenos de Neoplasias/metabolismo , Oxidorreductasas/metabolismo , Neoplasias de la Próstata/metabolismo , Antígenos de Neoplasias/genética , Dicroismo Circular , Humanos , Inmunoprecipitación , Masculino , Oxidorreductasas/genética , Neoplasias de la Próstata/genética , Estabilidad Proteica , Sefarosa/análogos & derivados , Sefarosa/química
15.
Q Rev Biophys ; 50: e3, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-29233215

RESUMEN

Amyloid formation of the synaptic brain protein α-synuclein (αS) is related to degeneration of dopaminergic neurons in Parkinson's disease patients. αS is thought to function in vesicle transport and fusion and it binds strongly to negatively charged vesicles in vitro. Here we combined circular dichroism, fluorescence and imaging methods in vitro to characterize the interaction of αS with negatively charged vesicles of DOPS (1,2-dioleoyl-sn-glycero-3-phospho-L-serine, sodium salt) and DOPG (1,2-dioleoyl-sn-glycero-3-phospho-(1'-rac-glycerol), sodium salt) and the consequences of such interactions on αS amyloid formation. We found that lipid head-group chemistry modulates αS interactions and also affects amyloid fiber formation. During the course of the experiments, we made the unexpected discovery that pre-formed αS oligomers, typically present in a small amount in the αS starting material, acted as templates for linear growth of anomalous amyloid fibers in the presence of vesicles. At the same time, the remaining αS monomers were restricted from vesicle-mediated nucleation of amyloid fibers. Although not a dominant process in bulk experiments, this hidden αS aggregation pathway may be of importance in vivo.


Asunto(s)
Amiloide/química , Glicerol/química , Glicerol/farmacología , Enfermedad de Parkinson/metabolismo , Multimerización de Proteína/efectos de los fármacos , alfa-Sinucleína/química , Agregado de Proteínas/efectos de los fármacos , Estructura Secundaria de Proteína
16.
Q Rev Biophys ; 50: e11, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-29233223

RESUMEN

We have discovered a well-defined extended conformation of double-stranded DNA, which we call Σ-DNA, using laser-tweezers force-spectroscopy experiments. At a transition force corresponding to free energy change ΔG = 1·57 ± 0·12 kcal (mol base pair)-1 60 or 122 base-pair long synthetic GC-rich sequences, when pulled by the 3'-3' strands, undergo a sharp transition to the 1·52 ± 0·04 times longer Σ-DNA. Intriguingly, the same degree of extension is also found in DNA complexes with recombinase proteins, such as bacterial RecA and eukaryotic Rad51. Despite vital importance to all biological organisms for survival, genome maintenance and evolution, the recombination reaction is not yet understood at atomic level. We here propose that the structural distortion represented by Σ-DNA, which is thus physically inherent to the nucleic acid, is related to how recombination proteins mediate recognition of sequence homology and execute strand exchange. Our hypothesis is that a homogeneously stretched DNA undergoes a 'disproportionation' into an inhomogeneous Σ-form consisting of triplets of locally B-like perpendicularly stacked bases. This structure may ensure improved fidelity of base-pair recognition and promote rejection in case of mismatch during homologous recombination reaction. Because a triplet is the length of a gene codon, we speculate that the structural physics of nucleic acids may have biased the evolution of recombinase proteins to exploit triplet base stacks and also the genetic code.


Asunto(s)
ADN/química , Fenómenos Mecánicos , Conformación de Ácido Nucleico , Fenómenos Biomecánicos , Modelos Moleculares
17.
An Acad Bras Cienc ; 91(4): e20190049, 2019.
Artículo en Inglés | MEDLINE | ID: mdl-31721921

RESUMEN

Different physiognomies across the Cerrado could influence the microbial C:N:P ratio in the soil since these physiognomies present different abundance and diversity of plant species. Thus, the aim of this study was to evaluate the microbial C:N:P ratio in soil across three different physiognomies of Cerrado in the Northeast, Brazil, namely campo graminóide (dominance of grasses), cerrado stricto sensu (dominance of grasses, shrubs, low trees, and woody stratum), and cerradão (dominance of woody stratum). Campo graminóide was characterized by lower values of total organic C, N, microbial C:P, N:P, and soil C:N. Cerrado stricto sensu presented average values for most of the measured parameters, while cerradão presented higher values of microbial C, N, P, organic C, N and soil C:P and C:N ratios. The principal component analysis showed that the samples grouped according to the sites, with a clear gradient from campo graminóide to cerradão. Therefore, the differences of vegetation across physiognomies of Cerrado influenced the soil microbial C:N:P ratio, where cerradão showed highest microbial C:N:P ratio than soil under campo graminóide.


Asunto(s)
Conservación de los Recursos Naturales , Fenómenos Fisiológicos de las Plantas , Microbiología del Suelo , Biomasa , Brasil
18.
Molecules ; 24(17)2019 Aug 30.
Artículo en Inglés | MEDLINE | ID: mdl-31480397

RESUMEN

Trypanosoma cruzi, the etiological agent of Chagas disease, is dependent on proline for a variety of processes, such as energy metabolism, host cell invasion, differentiation, and resistance to osmotic, metabolic, and oxidative stress. On this basis, we investigated a possible relationship between prolinemia and severity of T. cruzi infection in chronic patients, as reported here. The study population consisted of 112 subjects, separated into 83 chronically T. cruzi-infected patients and 29 age-matched healthy volunteers (control) of both sexes, recruited at the Chagas Disease Service from the Department of Cardiology, Hospital Provincial del Centenario de Rosario (Rosario, Argentina). Chagasic patients were separated into three groups: chronic asymptomatic, mild/moderate, and severe chronic chagasic cardiomyopathy (CCC) subjects. We observed a significant decrease of 11.7% in prolinemia in chagasic patients when compared to controls. Further analysis within the three groups of chagasic patients also revealed a statistically significant decrease of prolinemia in severe CCC patients compared to controls, showing a relative difference of 13.6% in proline concentrations. These data point to the possibility that collagen-which participates in the healing process of cardiac tissue-and proline metabolism in the myocardium could constitute new factors affecting the evolution of Chagas disease.


Asunto(s)
Enfermedad de Chagas/sangre , Enfermedad de Chagas/patología , Prolina/sangre , Adolescente , Adulto , Anciano , Enfermedad Crónica , Femenino , Humanos , Masculino , Persona de Mediana Edad , Adulto Joven
19.
Chembiochem ; 19(6): 545-551, 2018 03 16.
Artículo en Inglés | MEDLINE | ID: mdl-29237098

RESUMEN

Extracellular vesicles (EVs) are currently in scientific focus, as they have great potential to revolutionize the diagnosis and therapy of various diseases. However, numerous aspects of these species are still poorly understood, and thus, additional insight into their molecular-level properties, membrane-protein interactions, and membrane rigidity is still needed. We here demonstrate the use of red-blood-cell-derived EVs (REVs) that polarized light spectroscopy techniques, linear and circular dichroism, can provide molecular-level structural information on these systems. Flow-linear dichroism (flow-LD) measurements show that EVs can be oriented by shear force and indicate that hemoglobin molecules are associated to the lipid bilayer in freshly released REVs. During storage, this interaction ceases; this is coupled to major protein conformational changes relative to the initial state. Further on, the degree of orientation gives insight into vesicle rigidity, which decreases in time parallel to changes in protein conformation. Overall, we propose that both linear dichroism and circular dichroism spectroscopy can provide simple, rapid, yet efficient ways to track changes in the membrane-protein interactions of EV components at the molecular level, which may also give insight into processes occurring during vesiculation.


Asunto(s)
Vesículas Extracelulares/metabolismo , Luz , Fosfatidilcolinas/metabolismo , Dicroismo Circular , Eritrocitos/química , Eritrocitos/metabolismo , Vesículas Extracelulares/química , Humanos , Liposomas/química , Liposomas/metabolismo , Sustancias Macromoleculares/química , Sustancias Macromoleculares/metabolismo , Microscopía de Polarización , Fosfatidilcolinas/química
20.
Chemistry ; 24(58): 15685-15690, 2018 Oct 17.
Artículo en Inglés | MEDLINE | ID: mdl-30102440

RESUMEN

Fundamental research on Parkinson's disease (PD) most often focuses on the ability of α-synuclein (aS) to form oligomers and amyloids, and how such species promote brain cell death. However, there are indications that aS also plays a gene-regulatory role in the cell nucleus. Here, the interaction between monomeric aS and DNA in vitro has been investigated with single-molecule techniques. Using a nanofluidic channel system, it was discovered that aS binds to DNA and by studying the DNA-protein complexes at different confinements we determined that aS binding increases the persistence length of DNA from 70 to 90 nm at high coverage. By atomic force microscopy it was revealed that at low protein-to-DNA ratio, the aS binding occurs as small protein clusters scattered along the DNA; at high protein-to-DNA ratio, the DNA is fully covered by protein. As DNA-aS interactions may play roles in PD, it is of importance to characterize biophysical properties of such complexes in detail.


Asunto(s)
ADN/efectos de los fármacos , alfa-Sinucleína/farmacología , Dicroismo Circular , ADN/química , Regulación de la Expresión Génica/efectos de los fármacos , Humanos , Microfluídica , Microscopía de Fuerza Atómica , alfa-Sinucleína/química
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