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1.
EMBO J ; 41(22): e111158, 2022 11 17.
Artículo en Inglés | MEDLINE | ID: mdl-36245278

RESUMEN

Apicomplexan parasites possess secretory organelles called rhoptries that undergo regulated exocytosis upon contact with the host. This process is essential for the parasitic lifestyle of these pathogens and relies on an exocytic machinery sharing structural features and molecular components with free-living ciliates. However, how the parasites coordinate exocytosis with host interaction is unknown. Here, we performed a Tetrahymena-based transcriptomic screen to uncover novel exocytic factors in Ciliata and conserved in Apicomplexa. We identified membrane-bound proteins, named CRMPs, forming part of a large complex essential for rhoptry secretion and invasion in Toxoplasma. Using cutting-edge imaging tools, including expansion microscopy and cryo-electron tomography, we show that, unlike previously described rhoptry exocytic factors, TgCRMPs are not required for the assembly of the rhoptry secretion machinery and only transiently associate with the exocytic site-prior to the invasion. CRMPs and their partners contain putative host cell-binding domains, and CRMPa shares similarities with GPCR proteins. Collectively our data imply that the CRMP complex acts as a host-molecular sensor to ensure that rhoptry exocytosis occurs when the parasite contacts the host cell.


Asunto(s)
Toxoplasma , Toxoplasma/genética , Toxoplasma/metabolismo , Proteínas Protozoarias/metabolismo , Orgánulos/metabolismo , Exocitosis , Proteínas de la Membrana/metabolismo , Interacciones Huésped-Parásitos
2.
J Cell Sci ; 136(22)2023 11 15.
Artículo en Inglés | MEDLINE | ID: mdl-37902010

RESUMEN

The contractile vacuole complex (CVC) is a dynamic and morphologically complex membrane organelle, comprising a large vesicle (bladder) linked with a tubular reticulum (spongiome). CVCs provide key osmoregulatory roles across diverse eukaryotic lineages, but probing the mechanisms underlying their structure and function is hampered by the limited tools available for in vivo analysis. In the experimentally tractable ciliate Tetrahymena thermophila, we describe four proteins that, as endogenously tagged constructs, localize specifically to distinct CVC zones. The DOPEY homolog Dop1p and the CORVET subunit Vps8Dp localize both to the bladder and spongiome but with different local distributions that are sensitive to osmotic perturbation, whereas the lipid scramblase Scr7p colocalizes with Vps8Dp. The H+-ATPase subunit Vma4 is spongiome specific. The live imaging permitted by these probes revealed dynamics at multiple scales including rapid exchange of CVC-localized and soluble protein pools versus lateral diffusion in the spongiome, spongiome extension and branching, and CVC formation during mitosis. Although the association with DOP1 and VPS8D implicate the CVC in endosomal trafficking, both the bladder and spongiome might be isolated from bulk endocytic input.


Asunto(s)
Tetrahymena thermophila , Vacuolas , Vacuolas/metabolismo , Endosomas , Proteínas/metabolismo , Mitosis
3.
PLoS Genet ; 18(5): e1010194, 2022 05.
Artículo en Inglés | MEDLINE | ID: mdl-35587496

RESUMEN

In the ciliate Tetrahymena thermophila, lysosome-related organelles called mucocysts accumulate at the cell periphery where they secrete their contents in response to extracellular events, a phenomenon called regulated exocytosis. The molecular bases underlying regulated exocytosis have been extensively described in animals but it is not clear whether similar mechanisms exist in ciliates or their sister lineage, the Apicomplexan parasites, which together belong to the ecologically and medically important superphylum Alveolata. Beginning with a T. thermophila mutant in mucocyst exocytosis, we used a forward genetic approach to uncover MDL1 (Mucocyst Discharge with a LamG domain), a novel gene that is essential for regulated exocytosis of mucocysts. Mdl1p is a 40 kDa membrane glycoprotein that localizes to mucocysts, and specifically to a tip domain that contacts the plasma membrane when the mucocyst is docked. This sub-localization of Mdl1p, which occurs prior to docking, underscores a functional asymmetry in mucocysts that is strikingly similar to that of highly polarized secretory organelles in other Alveolates. A mis-sense mutation in the LamG domain results in mucocysts that dock but only undergo inefficient exocytosis. In contrast, complete knockout of MDL1 largely prevents mucocyst docking itself. Mdl1p is physically associated with 9 other proteins, all of them novel and largely restricted to Alveolates, and sedimentation analysis supports the idea that they form a large complex. Analysis of three other members of this putative complex, called MDD (for Mucocyst Docking and Discharge), shows that they also localize to mucocysts. Negative staining of purified MDD complexes revealed distinct particles with a central channel. Our results uncover a novel macromolecular complex whose subunits are conserved within alveolates but not in other lineages, that is essential for regulated exocytosis in T. thermophila.


Asunto(s)
Tetrahymena thermophila , Tetrahymena , Animales , Exocitosis/genética , Lisosomas/metabolismo , Orgánulos/metabolismo , Vesículas Secretoras/genética , Vesículas Secretoras/metabolismo , Tetrahymena thermophila/genética
4.
J Cell Sci ; 133(3)2020 02 12.
Artículo en Inglés | MEDLINE | ID: mdl-31964712

RESUMEN

In endolysosomal networks, two hetero-hexameric tethers called HOPS and CORVET are found widely throughout eukaryotes. The unicellular ciliate Tetrahymena thermophila possesses elaborate endolysosomal structures, but curiously both it and related protozoa lack the HOPS tether and several other trafficking proteins, while retaining the related CORVET complex. Here, we show that Tetrahymena encodes multiple paralogs of most CORVET subunits, which assemble into six distinct complexes. Each complex has a unique subunit composition and, significantly, shows unique localization, indicating participation in distinct pathways. One pair of complexes differ by a single subunit (Vps8), but have late endosomal versus recycling endosome locations. While Vps8 subunits are thus prime determinants for targeting and functional specificity, determinants exist on all subunits except Vps11. This unprecedented expansion and diversification of CORVET provides a potent example of tether flexibility, and illustrates how 'backfilling' following secondary losses of trafficking genes can provide a mechanism for evolution of new pathways.This article has an associated First Person interview with the first author of the paper.


Asunto(s)
Tetrahymena thermophila , Endosomas , Humanos , Lisosomas , Tetrahymena thermophila/genética , Proteínas de Transporte Vesicular
5.
Traffic ; 18(1): 18-28, 2017 01.
Artículo en Inglés | MEDLINE | ID: mdl-27696651

RESUMEN

As most of eukaryotic diversity lies in single-celled protists, they represent unique opportunities to ask questions about the balance of conservation and innovation in cell biological features. Among free-living protists the ciliates offer ease of culturing, a rich array of experimental approaches, and versatile molecular tools, particularly in Tetrahymena thermophila and Paramecium tetraurelia. These attributes have been exploited by researchers to analyze a wealth of cellular structures in these large and complex cells. This mini-review focuses on 3 aspects of ciliate membrane dynamics, all linked with endolysosomal trafficking. First is nutrition based on phagocytosis and maturation of food vacuoles. Secondly, we discuss regulated exocytosis from vesicles that have features of both dense core secretory granules but also lysosome-related organelles. The third topic is the targeting, breakdown and resorption of parental nuclei in mating partners. For all 3 phenomena, it is clear that elements of the canonical membrane-trafficking system have been retained and in some cases repurposed. In addition, there is evidence that recently evolved, lineage-specific proteins provide determinants in these pathways.


Asunto(s)
Membranas/metabolismo , Transporte de Proteínas/fisiología , Animales , Exocitosis/fisiología , Humanos , Lisosomas/metabolismo , Lisosomas/fisiología , Paramecium tetraurelia/metabolismo , Fagocitosis/fisiología , Proteínas Protozoarias/metabolismo , Vesículas Secretoras/metabolismo , Tetrahymena thermophila/metabolismo
6.
Environ Microbiol ; 20(7): 2410-2421, 2018 07.
Artículo en Inglés | MEDLINE | ID: mdl-29687579

RESUMEN

Extreme stress situations can induce genetic variations including genome reorganization. In ciliates like Tetrahymena thermophila, the approximately 45-fold ploidy of the somatic macronucleus may enable adaptive responses that depend on genome plasticity. To identify potential genome-level adaptations related to metal toxicity, we isolated three Tetrahymena thermophila strains after an extended adaptation period to extreme metal concentrations (Cd2+ , Cu2+ or Pb2+ ). In the Cd-adapted strain, we found a approximately five-fold copy number increase of three genes located in the same macronuclear chromosome, including two metallothionein genes, MTT1 and MTT3. The apparent amplification of this macronuclear chromosome was reversible and reproducible, depending on the presence of environmental metal. We also analysed three knockout (KO) and/or knockdown (KD) strains for MTT1 and/or MTT5. In the MTT5KD strain, we found at least two new genes arising from paralogous expansion of MTT1, which encode truncated variants of MTT1. The expansion can be explained by a model based on somatic recombination between MTT1 genes on pairs of macronuclear chromosomes. At least two of the new paralogs are transcribed and upregulated in response to Cd2+ . Altogether, we have thus identified two distinct mechanisms, both involving genomic plasticity in the polyploid macronucleus that may represent adaptive responses to metal-related stress.


Asunto(s)
Genoma de Protozoos , Metalotioneína/genética , Tetrahymena thermophila/genética , Adaptación Fisiológica , Animales , Cromosomas , Metalotioneína/metabolismo , Estrés Fisiológico , Tetrahymena thermophila/fisiología , Regulación hacia Arriba
7.
Proc Natl Acad Sci U S A ; 111(48): 16990-4, 2014 Dec 02.
Artículo en Inglés | MEDLINE | ID: mdl-25404324

RESUMEN

All aspects of biological diversification ultimately trace to evolutionary modifications at the cellular level. This central role of cells frames the basic questions as to how cells work and how cells come to be the way they are. Although these two lines of inquiry lie respectively within the traditional provenance of cell biology and evolutionary biology, a comprehensive synthesis of evolutionary and cell-biological thinking is lacking. We define evolutionary cell biology as the fusion of these two eponymous fields with the theoretical and quantitative branches of biochemistry, biophysics, and population genetics. The key goals are to develop a mechanistic understanding of general evolutionary processes, while specifically infusing cell biology with an evolutionary perspective. The full development of this interdisciplinary field has the potential to solve numerous problems in diverse areas of biology, including the degree to which selection, effectively neutral processes, historical contingencies, and/or constraints at the chemical and biophysical levels dictate patterns of variation for intracellular features. These problems can now be examined at both the within- and among-species levels, with single-cell methodologies even allowing quantification of variation within genotypes. Some results from this emerging field have already had a substantial impact on cell biology, and future findings will significantly influence applications in agriculture, medicine, environmental science, and synthetic biology.


Asunto(s)
Evolución Biológica , Biología Celular , Células/química , Células/metabolismo , Animales , Archaea/química , Archaea/citología , Archaea/metabolismo , Bacterias/química , Bacterias/citología , Bacterias/metabolismo , Eucariontes/química , Eucariontes/citología , Eucariontes/metabolismo , Humanos
8.
Eukaryot Cell ; 14(8): 817-33, 2015 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-26092918

RESUMEN

In many organisms, sophisticated mechanisms facilitate release of peptides in response to extracellular stimuli. In the ciliate Tetrahymena thermophila, efficient peptide secretion depends on specialized vesicles called mucocysts that contain dense crystalline cores that expand rapidly during exocytosis. Core assembly depends of endoproteolytic cleavage of mucocyst proproteins by an aspartyl protease, cathepsin 3 (CTH3). Here, we show that a second enzyme identified by expression profiling, Cth4p, is also required for processing of proGrl proteins and for assembly of functional mucocysts. Cth4p is a cysteine cathepsin that localizes partially to endolysosomal structures and appears to act downstream of, and may be activated by, Cth3p. Disruption of CTH4 results in cells (Δcth4) that show aberrant trimming of Grl proproteins, as well as grossly aberrant mucocyst exocytosis. Surprisingly, Δcth4 cells succeed in assembling crystalline mucocyst cores. However, those cores do not undergo normal directional expansion during exocytosis, and they thus fail to efficiently extrude from the cells. We could phenocopy the Δcth4 defects by mutating conserved catalytic residues, indicating that the in vivo function of Cth4p is enzymatic. Our results indicate that as for canonical proteins packaged in animal secretory granules, the maturation of mucocyst proproteins involves sequential processing steps. The Δcth4 defects uncouple, in an unanticipated way, the assembly of mucocyst cores and their subsequent expansion and thereby reveal a previously unsuspected aspect of polypeptide secretion in ciliates.


Asunto(s)
Catepsinas/metabolismo , Cisteína/metabolismo , Orgánulos/metabolismo , Péptidos/metabolismo , Vesículas Secretoras/metabolismo , Tetrahymena thermophila/metabolismo , Transporte Biológico/fisiología , Exocitosis/fisiología , Lisosomas/metabolismo , Mutación/fisiología , Proteínas Protozoarias/metabolismo
9.
J Exp Zool B Mol Dev Evol ; 322(7): 500-16, 2014 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-24634411

RESUMEN

Tetrahymena thermophila, a member of the Ciliates, represents a class of organisms distantly related from commonly used model organisms in cell biology, and thus offers an opportunity to explore potentially novel mechanisms and their evolution. Ciliates, like all eukaryotes, possess a complex network of organelles that facilitate both macromolecular uptake and secretion. The underlying endocytic and exocytic pathways are key mediators of a cell's interaction with its environment, and may therefore show niche-specific adaptations. Our laboratory has taken a variety of approaches to identify key molecular determinants for membrane trafficking pathways in Tetrahymena. Studies of Rab GTPases, dynamins, and sortilin-family receptors substantiate the widespread conservation of some features but also uncover surprising roles for lineage-restricted innovation.


Asunto(s)
Membrana Celular/química , Filogenia , Proteínas Protozoarias/química , Tetrahymena thermophila/química , Proteínas Adaptadoras del Transporte Vesicular/química , Dinaminas/química , Proteínas de Unión al GTP rab/química
10.
Biometals ; 27(1): 195-205, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24430977

RESUMEN

The significance of metal(oid)s as environmental pollutants has made them a priority in ecotoxicology, with the aim of minimizing exposure to animals or humans. Therefore, it is necessary to develop sensitive and inexpensive methods that can efficiently detect and monitor these pollutants in the environment. Conventional analytical techniques suffer from the disadvantages of high cost and complexity. Alternatively, prokaryotic or eukaryotic whole-cell biosensors (WCB) are one of the newest molecular tools employed in environmental monitoring that use the cell as an integrated reporter incorporating a reporter gene fused to a heavy metal responsive promoter. In the present paper, we report results from expressing, in the ciliate Tetrahymena thermophila, constructs consisting of the reporter gfp gene fused to the complete MTT1 or MTT5 protein coding regions under the transcriptional control of the MTT1 metallothionein promoter, which plays a critical role in heavy metal stress in this ciliate. When exposed to Cd(2+), such cells overexpress both the GFP reporter transgene and the linked metallothionein gene. We report that, for the GFPMTT5 strain, this metallothionein overexpression results in marked resistance to cadmium toxicity (24 h LC50 ~15 µM of Cd(2+)), compared to wild type cells (24 h LC50 ~1.73 µM of Cd(2+)). These results provide the first experimental evidence that ciliate metallothioneins, like in other organisms, function to protect the cell against toxic metal ions. Because these strains may have novel advantages as WCBs, we have compared their properties to those of other previously reported Tetrahymena WCBs.


Asunto(s)
Técnicas Biosensibles , Cadmio/análisis , Proteínas Fluorescentes Verdes/metabolismo , Metalotioneína/metabolismo , Proteínas Recombinantes de Fusión/metabolismo , Tetrahymena thermophila/citología , Tetrahymena thermophila/metabolismo , Células Cultivadas , Proteínas Fluorescentes Verdes/genética , Metalotioneína/genética , Proteínas Recombinantes de Fusión/genética , Contaminantes del Suelo/análisis , Tetrahymena thermophila/genética
11.
Mol Ecol ; 22(4): 912-4, 2013 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-23476937

RESUMEN

We live on a microbial planet. Microorganisms dominate in terms of numbers of lineages, numbers of organisms, biomass and evolutionary innovations. Yet much remains to be learned about our microbial neighbours. We have gotten to know a few species that have been transformed into 'laboratory rats' (i.e. model organisms), but even here our understanding of the natural history of these lineages remains inadequate as there are few data from populations living in natural habitats. Zufall et al. (2013) move beyond this trend by providing insights into the natural history of Tetrahymena thermophila, a ciliate that has been used in many studies of cellular and molecular biology. Characterization of T. thermophila sampled from numerous ponds across this ciliate's range in Eastern North America reveals the following: (i) considerable differentiation among isolates, with the greatest diversity among lineages in New England, and (ii) a relatively small effective population size for this model ciliate. Such population data are fundamental for inferences about the origins of the numerous remarkable features of T. thermophila.


Asunto(s)
Variación Genética , Genética de Población/métodos , Tetrahymena thermophila/genética , ADN Mitocondrial/genética , Flujo Génico , América del Norte
12.
PLoS Genet ; 6(10): e1001155, 2010 Oct 14.
Artículo en Inglés | MEDLINE | ID: mdl-20976245

RESUMEN

Cellular sophistication is not exclusive to multicellular organisms, and unicellular eukaryotes can resemble differentiated animal cells in their complex network of membrane-bound structures. These comparisons can be illuminated by genome-wide surveys of key gene families. We report a systematic analysis of Rabs in a complex unicellular Ciliate, including gene prediction and phylogenetic clustering, expression profiling based on public data, and Green Fluorescent Protein (GFP) tagging. Rabs are monomeric GTPases that regulate membrane traffic. Because Rabs act as compartment-specific determinants, the number of Rabs in an organism reflects intracellular complexity. The Tetrahymena Rab family is similar in size to that in humans and includes both expansions in conserved Rab clades as well as many divergent Rabs. Importantly, more than 90% of Rabs are expressed concurrently in growing cells, while only a small subset appears specialized for other conditions. By localizing most Rabs in living cells, we could assign the majority to specific compartments. These results validated most phylogenetic assignments, but also indicated that some sequence-conserved Rabs were co-opted for novel functions. Our survey uncovered a rare example of a nuclear Rab and substantiated the existence of a previously unrecognized core Rab clade in eukaryotes. Strikingly, several functionally conserved pathways or structures were found to be associated entirely with divergent Rabs. These pathways may have permitted rapid evolution of the associated Rabs or may have arisen independently in diverse lineages and then converged. Thus, characterizing entire gene families can provide insight into the evolutionary flexibility of fundamental cellular pathways.


Asunto(s)
Membrana Celular/metabolismo , Proteínas Protozoarias/genética , Tetrahymena thermophila/genética , Proteínas de Unión al GTP rab/genética , Animales , Transporte Biológico , Western Blotting , Endocitosis , Células Eucariotas/metabolismo , Evolución Molecular , Genoma de Protozoos , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Microscopía Fluorescente , Familia de Multigenes , Fagocitosis , Filogenia , Proteínas Protozoarias/metabolismo , Transducción de Señal , Tetrahymena thermophila/metabolismo , Proteínas de Unión al GTP rab/clasificación , Proteínas de Unión al GTP rab/metabolismo
13.
bioRxiv ; 2023 Nov 08.
Artículo en Inglés | MEDLINE | ID: mdl-37986963

RESUMEN

Contractile vacuole complexes (CVCs) are complex osmoregulatory organelles, with vesicular (bladder) and tubular (spongiome) subcompartments. The mechanisms that underlie their formation and maintenance within the eukaryotic endomembrane network are poorly understood. In the Ciliate Tetrahymena thermophila, six differentiated CORVETs (class C core vacuole/endosome tethering complexes), with Vps8 subunits designated A-F, are likely to direct endosomal trafficking. Vps8Dp localizes to both bladder and spongiome. We show by inducible knockdown that VPS8D is essential to CVC organization and function. VPS8D knockdown increased susceptibility to osmotic shock, tolerated in the wildtype but triggering irreversible lethal swelling in the mutant. The knockdown rapidly triggered contraction of the spongiome and lengthened the period of the bladder contractile cycle. More prolonged knockdown resulted in disassembly of both the spongiome and bladder, and dispersal of proteins associated with those compartments. In stressed cells where the normally singular bladder is replaced by numerous vesicles bearing bladder markers, Vps8Dp concentrated conspicuously at long-lived inter-vesicle contact sites, consistent with tethering activity. Similarly, Vps8Dp in cell-free preparations accumulated at junctions formed after vacuoles came into close contact. Also consistent with roles for Vps8Dp in tethering and/or fusion were the emergence in knockdown cells of multiple vacuole-related structures, replacing the single bladder.

14.
Curr Biol ; 18(16): 1227-33, 2008 Aug 26.
Artículo en Inglés | MEDLINE | ID: mdl-18701286

RESUMEN

Dynamin-related proteins (DRPs) are GTPases that reversibly assemble on cellular membranes [1]. Individual DRPs (here "DRP" includes authentic dynamins) function in fission or tubulation of the plasma membrane, trans-Golgi network, mitochondria, peroxisomes, chloroplasts, and endosomes [1] and in mitochondrial fusion [2]. Many of these functions are widespread; they are present in animals, plants, trypanosomes, Giardia, ciliates, alga, and slime molds [3-8]. Lineage-specific expansions of the gene family created specialized DRPs. In animals, such DRPs include MxB, which has been reported to regulate nuclear-pore transport [9]. Whereas many unicellular organisms possess a small number of DRPs, expansions occurred in some protist lineages. The eight DRPs in the ciliate Tetrahymena thermophila might contribute to aspects of ciliate complexity. Each ciliate cell contains distinct germline and somatic nuclei, whose differentiation and maintenance must require distinct machinery [10, 11]. Here we show that Drp6p, previously shown to be targeted to the nuclear envelope [3], is required for macronuclear development. Drp6p activity, which is distinct from that of the only other known nuclear DRP, is modulated by a combination of stage-specific subcellular targeting and assembly dynamics. This work demonstrates a novel DRP activity and presents a system in which environmental and developmental cues can be used for manipulating key aspects of regulation.


Asunto(s)
Forma del Núcleo Celular , Tamaño del Núcleo Celular , GTP Fosfohidrolasas/metabolismo , Tetrahymena thermophila/citología , Animales , Conjugación Genética , Evolución Molecular , GTP Fosfohidrolasas/genética , Familia de Multigenes , Inanición , Tetrahymena thermophila/fisiología
15.
Nat Microbiol ; 6(4): 425-434, 2021 04.
Artículo en Inglés | MEDLINE | ID: mdl-33495622

RESUMEN

Apicomplexa are unicellular eukaryotes and obligate intracellular parasites, including Plasmodium (the causative agent of malaria) and Toxoplasma (one of the most widespread zoonotic pathogens). Rhoptries, one of their specialized secretory organelles, undergo regulated exocytosis during invasion1. Rhoptry proteins are injected directly into the host cell to support invasion and subversion of host immune function2. The mechanism by which they are discharged is unclear and appears distinct from those in bacteria, yeast, animals and plants. Here, we show that rhoptry secretion in Apicomplexa shares structural and genetic elements with the exocytic machinery of ciliates, their free-living relatives. Rhoptry exocytosis depends on intramembranous particles in the shape of a rosette embedded into the plasma membrane of the parasite apex. Formation of this rosette requires multiple non-discharge (Nd) proteins conserved and restricted to Ciliata, Dinoflagellata and Apicomplexa that together constitute the superphylum Alveolata. We identified Nd6 at the site of exocytosis in association with an apical vesicle. Sandwiched between the rosette and the tip of the rhoptry, this vesicle appears as a central element of the rhoptry secretion machine. Our results describe a conserved secretion system that was adapted to provide defence for free-living unicellular eukaryotes and host cell injection in intracellular parasites.


Asunto(s)
Alveolados/fisiología , Orgánulos/metabolismo , Alveolados/clasificación , Alveolados/ultraestructura , Membrana Celular/metabolismo , Exocitosis , Interacciones Huésped-Parásitos , Humanos , Proteínas Protozoarias/genética , Proteínas Protozoarias/metabolismo , Vesículas Secretoras/metabolismo
16.
Eukaryot Cell ; 8(10): 1575-83, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19684282

RESUMEN

Dense core granules (DCGs) in Tetrahymena thermophila contain two protein classes. Proteins in the first class, called granule lattice (Grl), coassemble to form a crystalline lattice within the granule lumen. Lattice expansion acts as a propulsive mechanism during DCG release, and Grl proteins are essential for efficient exocytosis. The second protein class, defined by a C-terminal beta/gamma-crystallin domain, is poorly understood. Here, we have analyzed the function and sorting of Grt1p (granule tip), which was previously identified as an abundant protein in this family. Cells lacking all copies of GRT1, together with the closely related GRT2, accumulate wild-type levels of docked DCGs. Unlike cells disrupted in any of the major GRL genes, DeltaGRT1 DeltaGRT2 cells show no defect in secretion, indicating that neither exocytic fusion nor core expansion depends on GRT1. These results suggest that Grl protein sorting to DCGs is independent of Grt proteins. Consistent with this, the granule core lattice in DeltaGRT1 DeltaGRT2 cells appears identical to that in wild-type cells by electron microscopy, and the only biochemical component visibly absent is Grt1p itself. Moreover, gel filtration showed that Grl and Grt proteins in cell homogenates exist in nonoverlapping complexes, and affinity-isolated Grt1p complexes do not contain Grl proteins. These data demonstrate that two major classes of proteins in Tetrahymena DCGs are likely to be independently transported during DCG biosynthesis and play distinct roles in granule function. The role of Grt1p may primarily be postexocytic; consistent with this idea, DCG contents from DeltaGRT1 DeltaGRT2 cells appear less adhesive than those from the wild type.


Asunto(s)
Proteínas Protozoarias/metabolismo , Vesículas Secretoras/metabolismo , Tetrahymena thermophila/metabolismo , Transporte Biológico , Proteínas de Unión al Calcio/metabolismo , Exocitosis , Proteínas Protozoarias/química , Proteínas Protozoarias/genética
17.
Curr Biol ; 30(10): R502-R510, 2020 05 18.
Artículo en Inglés | MEDLINE | ID: mdl-32428490

RESUMEN

In this primer, Cheng et al. outline what we know about the nature and control of differentiation of germline versus somatic nuclei in two groups of protozoa: the Ciliates and Foraminifera. This is shown to involve a remarkable variety of developmentally programmed phenomena such as genome editing mediated epigenetically by RNA, as well differential nuclear import.


Asunto(s)
Evolución Biológica , Núcleo Celular/genética , Núcleo Celular/fisiología , Eucariontes/citología , Eucariontes/genética , ADN/genética , Regulación de la Expresión Génica , Genoma , Humanos , Mutación
18.
Mol Biol Cell ; 31(26): 2892-2903, 2020 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-33112725

RESUMEN

Membrane traffic can be studied by imaging a cargo protein as it transits the secretory pathway. The best tools for this purpose initially block export of the secretory cargo from the endoplasmic reticulum (ER) and then release the block to generate a cargo wave. However, previously developed regulatable secretory cargoes are often tricky to use or specific for a single model organism. To overcome these hurdles for budding yeast, we recently optimized an artificial fluorescent secretory protein that exits the ER with the aid of the Erv29 cargo receptor, which is homologous to mammalian Surf4. The fluorescent secretory protein forms aggregates in the ER lumen and can be rapidly disaggregated by addition of a ligand to generate a nearly synchronized cargo wave. Here we term this regulatable secretory protein ESCargo (Erv29/Surf4-dependent secretory cargo) and demonstrate its utility not only in yeast cells, but also in cultured mammalian cells, Drosophila cells, and the ciliate Tetrahymena thermophila. Kinetic studies indicate that rapid export from the ER requires recognition by Erv29/Surf4. By choosing an appropriate ER signal sequence and expression vector, this simple technology can likely be used with many model organisms.


Asunto(s)
Modelos Biológicos , Proteínas/metabolismo , Vías Secretoras , Animales , Drosophila melanogaster/citología , Drosophila melanogaster/metabolismo , Retículo Endoplásmico/metabolismo , Humanos , Neuronas/metabolismo , Transporte de Proteínas , Ratas , Saccharomyces cerevisiae/metabolismo , Tetrahymena/metabolismo
19.
PLoS Biol ; 4(9): e286, 2006 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-16933976

RESUMEN

The ciliate Tetrahymena thermophila is a model organism for molecular and cellular biology. Like other ciliates, this species has separate germline and soma functions that are embodied by distinct nuclei within a single cell. The germline-like micronucleus (MIC) has its genome held in reserve for sexual reproduction. The soma-like macronucleus (MAC), which possesses a genome processed from that of the MIC, is the center of gene expression and does not directly contribute DNA to sexual progeny. We report here the shotgun sequencing, assembly, and analysis of the MAC genome of T. thermophila, which is approximately 104 Mb in length and composed of approximately 225 chromosomes. Overall, the gene set is robust, with more than 27,000 predicted protein-coding genes, 15,000 of which have strong matches to genes in other organisms. The functional diversity encoded by these genes is substantial and reflects the complexity of processes required for a free-living, predatory, single-celled organism. This is highlighted by the abundance of lineage-specific duplications of genes with predicted roles in sensing and responding to environmental conditions (e.g., kinases), using diverse resources (e.g., proteases and transporters), and generating structural complexity (e.g., kinesins and dyneins). In contrast to the other lineages of alveolates (apicomplexans and dinoflagellates), no compelling evidence could be found for plastid-derived genes in the genome. UGA, the only T. thermophila stop codon, is used in some genes to encode selenocysteine, thus making this organism the first known with the potential to translate all 64 codons in nuclear genes into amino acids. We present genomic evidence supporting the hypothesis that the excision of DNA from the MIC to generate the MAC specifically targets foreign DNA as a form of genome self-defense. The combination of the genome sequence, the functional diversity encoded therein, and the presence of some pathways missing from other model organisms makes T. thermophila an ideal model for functional genomic studies to address biological, biomedical, and biotechnological questions of fundamental importance.


Asunto(s)
Genoma de Protozoos , Macronúcleo/genética , Modelos Biológicos , Tetrahymena thermophila/genética , Animales , Células Cultivadas , Mapeo Cromosómico/métodos , Cromosomas , Bases de Datos Genéticas , Células Eucariotas/fisiología , Evolución Molecular , Micronúcleo Germinal/genética , Modelos Animales , Filogenia , Transducción de Señal
20.
PLoS Genet ; 1(5): e52, 2005 Nov.
Artículo en Inglés | MEDLINE | ID: mdl-16276403

RESUMEN

Ciliates, although single-celled organisms, contain numerous subcellular structures and pathways usually associated with metazoans. How this cell biological complexity relates to the evolution of molecular elements is unclear, because features in these cells have been defined mainly at the morphological level. Among these ciliate features are structures resembling clathrin-coated, endocytic pits associated with plasma membrane invaginations called parasomal sacs. The combination of genome-wide sequencing in Tetrahymena thermophila with tools for gene expression and replacement has allowed us to examine this pathway in detail. Here we demonstrate that parasomal sacs are sites of clathrin-dependent endocytosis and that AP-2 localizes to these sites. Unexpectedly, endocytosis in Tetrahymena also involves a protein in the dynamin family, Drp1p (Dynamin-related protein 1). While phylogenetic analysis of AP subunits indicates a primitive origin for clathrin-mediated endocytosis, similar analysis of dynamin-related proteins suggests, strikingly, that the recruitment of dynamin-family proteins to the endocytic pathway occurred independently during the course of the ciliate and metazoan radiations. Consistent with this, our functional analysis suggests that the precise roles of dynamins in endocytosis, as well as the mechanisms of targeting, differ in metazoans and ciliates.


Asunto(s)
Clatrina/fisiología , Dinaminas/genética , Endocitosis , Evolución Molecular , Tetrahymena/genética , Animales , Clatrina/química , Clatrina/metabolismo , Técnicas Genéticas , Genoma , Modelos Biológicos , Datos de Secuencia Molecular , Factor de Transcripción AP-2/metabolismo , Transgenes
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