The phylogeny and global biogeography of Primulaceae based on high-throughput DNA sequence data.

The angiosperm family Primulaceae is morphologically diverse and distributed nearly worldwide. However, phylogenetic uncertainty has obstructed the identification of major morphological and biogeographic transitions within the clade. We used target capture sequencing with the Angiosperms353 probes, taxon-sampling encompassing nearly all genera of the family, tree-based sequence curation, and multiple phylogenetic approaches to investigate the major clades of Primulaceae and their relationship to other Ericales. We generated dated phylogenetic trees and conducted broad-scale biogeographic analyses as well as stochastic character mapping of growth habit. We show that Ardisia, a pantropical genus and the largest in the family, is not monophyletic, with at least 19 smaller genera nested within it. Neotropical members of Ardisia and several smaller genera form a clade, an ancestor of which arrived in the Neotropics and began diversifying about 20 Ma. This Neotropical clade is most closely related to Elingamita and Tapeinosperma, which are most diverse on islands of the Pacific. Both Androsace and Primula are non-monophyletic by the inclusion of smaller genera. Ancestral state reconstructions revealed that there have either been parallel transitions to an herbaceous habit in Primuloideae, Samolus, and at least three lineages of Myrsinoideae, or a common ancestor of nearly all Primulaceae was herbaceous. Our results provide a robust estimate of phylogenetic relationships across Primulaceae and show that a revised classification of Myrsinoideae and several other clades within the family is necessary to render all genera monophyletic.

A linear sequence to facilitate curation of herbarium specimens of Annonaceae.

This paper provides a linear sequence of four subfamilies, 15 tribes and 106 genera of the magnoliid family Annonaceae, based on state-of-the-art and stable phylogenetic relationships. The linear sequence facilitates the organisation of Annonaceae herbarium specimens.

Ardisiakrauensis, a new species of Primulaceae (Myrsinoideae) from Peninsular Malaysia.

Ardisiakrauensis, a new species of Primulaceae from Peninsular Malaysia, is described and illustrated. The new species is assignable into subgenus (§) Pyrgus on account of specialised lateral reproductive branches bearing a terminal inflorescence subtended by foliose bracts. Morphologically, the new species mostly resembles Ardisiarigida in having elliptic leaves. However, the new species can be distinguished by the combination of its lateral veins number, the inflorescence branching pattern, the rachis and flower colour, and the stigma shape. Ardisiakrauensis is found in an entirely protected habitat, thus, it is assessed as Least Concern (LC).

Ardisiarecurvipetala (Primulaceae-Myrsinoideae), a new species from northern Peninsular Malaysia.

Recent fieldwork in Terengganu, Peninsular Malaysia, resulted in the collection of an endemic new species of Ardisia, described here as Ardisiarecurvipetala Julius, Siti-Munirah & Utteridge. The species is a member of subgenus (§) Crispardisia on account of its vascularised glands (bacterial nodules) on the leaf margin and the terminal inflorescence on a specialised lateral branch subtended by a normal leaf (rather than a reduced bract-like leaf). Ardisiarecurvipetala is unique amongst all members of §Crispardisia by having leaf margins with both vascularised glands and pustule-like structures and can be further distinguished from other Peninsular Malaysian members of this subgenus by the lamina raised between the leaf venation giving a somewhat bullate appearance, unbranched inflorescences, brownish-red pedicels and recurved corolla lobes, each with a creamy-white apex and a small pink patch at the base. Ardisiarecurvipetala is known only from a single location in Terengganu and its conservation status is assessed as Data Deficient (DD).

Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history.

Herbarium collections are an important source of dated, identified and preserved DNA, whose use in comparative genomics and phylogeography can shed light on the emergence and evolutionary history of plant pathogens. Here, we reconstruct 13 historical genomes of the bacterial crop pathogen Xanthomonas citri pv. citri (Xci) from infected Citrus herbarium specimens. Following authentication based on ancient DNA damage patterns, we compare them with a large set of modern genomes to estimate their phylogenetic relationships, pathogenicity-associated gene content and several evolutionary parameters. Our results indicate that Xci originated in Southern Asia ~11,500 years ago (perhaps in relation to Neolithic climate change and the development of agriculture) and diversified during the beginning of the 13th century, after Citrus diversification and before spreading to the rest of the world (probably via human-driven expansion of citriculture through early East-West trade and colonization).

Ardisiawhitmorei (Primulaceae-Myrsinoideae), a new species from north east of Peninsular Malaysia.

Ardisiawhitmorei Julius & Utteridge, sp. nov. (Primulaceae-Myrsinoideae), a member of ArdisiasubgenusStylardisia on account of the style protruding from the closed petals prior to anthesis, is herein described and illustrated as a new species. This new species is easily distinguished by the combination of the inflorescences with a slender rachis branched to two orders, the corolla lobes are abaxially glabrous with usually up to only two gland-dots near the apex and the brochidrodromous secondary veins with double loops near the margin.

A Bird's Eye View of the Systematics of Convolvulaceae: Novel Insights From Nuclear Genomic Data.

Convolvulaceae is a family of c. 2,000 species, distributed across 60 currently recognized genera. It includes species of high economic importance, such as the crop sweet potato (Ipomoea batatas L.), the ornamental morning glories (Ipomoea L.), bindweeds (Convolvulus L.), and dodders, the parasitic vines (Cuscuta L.). Earlier phylogenetic studies, based predominantly on chloroplast markers or a single nuclear region, have provided a framework for systematic studies of the family, but uncertainty remains at the level of the relationships among subfamilies, tribes, and genera, hindering evolutionary inferences and taxonomic advances. One of the enduring enigmas has been the relationship of Cuscuta to the rest of Convolvulaceae. Other examples of unresolved issues include the monophyly and relationships within Merremieae, the "bifid-style" clade (Dicranostyloideae), as well as the relative positions of Erycibe Roxb. and Cardiochlamyeae. In this study, we explore a large dataset of nuclear genes generated using Angiosperms353 kit, as a contribution to resolving some of these remaining phylogenetic uncertainties within Convolvulaceae. For the first time, a strongly supported backbone of the family is provided. Cuscuta is confirmed to belong within family Convolvulaceae. "Merremieae," in their former tribal circumscription, are recovered as non-monophyletic, with the unexpected placement of Distimake Raf. as sister to the clade that contains Ipomoeeae and Decalobanthus Ooststr., and Convolvuleae nested within the remaining "Merremieae." The monophyly of Dicranostyloideae, including Jacquemontia Choisy, is strongly supported, albeit novel relationships between genera are hypothesized, challenging the current tribal delimitation. The exact placements of Erycibe and Cuscuta remain uncertain, requiring further investigation. Our study explores the benefits and limitations of increasing sequence data in resolving higher-level relationships within Convolvulaceae, and highlights the need for expanded taxonomic sampling, to facilitate a much-needed revised classification of the family.

Two new species of Ardisia subgenus Tetrardisia (Primulaceae-Myrsinoideae) from Borneo.

Ardisia argentiana and A. nagaensis from subgenus Tetrardisia are herein described and illustrated as new species. They are endemic to Borneo and the Indonesian province of Central Kalimantan and to the Malaysian state of Sarawak, respectively. Ardisia argentiana is unique in its linear-oblong leaves, with a long, acuminate-caudate apex, and finely serrulate margins, while A. nagaensis can be easily recognized by its elliptic-lanceolate leaves.