3,4-dihydroxyproline: a new amino acid in diatom cell walls.

An analog of proline, 2, 3-cis-3, 4-trans-3, 4-dihydroxy-L-proline, was found in the cell walls of the eight species of diatoms studied and was isolated from the proteinaceous material of the wall of Navicula pelliculosa. The properties of this substance are described; its structure was confirmed by nuclear magnetic resonance spectros-copy.

Role of silicon on diatom metabolism. IX. Differential synthesis of DNA polymerases and DNA-binding proteins during silicate starvation and recovery in Cylindrotheca fusiformis.

During recovery from silicate-starvation, a period of active DNA synthesis, synchronized cells of Cylindrotheca fusiformis incorporated 3 times more L-[U-14C]aspartate than did starved cells. Of the diatoms's four DNA polymerases, A and D are synthesized during silicate recovery, indicating that they are involved in silicate-dependent DNA replication. Polymerase B, and the chloroplast enzyme, polymerase C, are synthesized during silicate-starvation and their levels are unaffected by the addition of silicate. DEAE-Sephadex analysis of the DNA-binding proteins, labeled with [14C]- and [3H]asparate, shows that only three proteins are synthesized in cells recovering from silicate-starvation. Two of these proteins correspond to polymerases A and D, while the function of the third protein is not known. At least 15 other proteins are present in silicate-starved cells and their synthesis is repressed upon the addition of silicate. Models are proposed which describe the modes by which silicate might regulate DNA synthesis in the diatom.

Studies on the biosynthesis of sulfolipids in the Diatom Nitzschia alba.

Labeling of sulfolipids in Nitzschia alba was studied after growth of the cells in media containing L-[35S]cystine, L-[35S], L-[35S]cysteine, L-[35S]-methionine or a mixture of L-[Me-3H]methionine and L-[35S]methionine, [35S]Cysteine or [35S]cystine labeled the deoxyceramide sulfonate and the sulfonium analog, phosphatidylsulfocholine (and its lyso derivative) but not the sterol sulfate nor the sulfoquinovosyl diglyceride; [35S]methionine labeled only the phosphatidylsulfocholine and its lyso derivative. With the [35S]- and [Me-3H]methionine mixture (3H/35S ratio 1.0) the phosphatidylsulfocholine had a 3H/35 S ratio of 1.5 indicating that both sulfonium methyl groups were derived from methionine. Probable biosynthetic pathways for these novel sulfolipids are discussed.

Identification of the sulfolipids in the non-photosynthetic diatom Nitzschia alba.

The four major sulfolipids in the non-photosynthetic marine diatom, Nitzschia alba, were isolated in pure form and their structures were established spectrometrically and by identification of their hydrolysis products as (a) 24-methylene cholesterol sulfate, (b) 1-deoxyceramide-1-sulfonate, (c) phosphatidyl sulfocholine (a sulfonium analogue of phosphatidylcholine) and (d) sulfoquinovosyl diglyceride. The major characteristic fatty acids of the sulfolipids were: for the deoxyceramide sulfonate, 16 : 0 (26%) and 16 : 1-delta3-trans (64%); for the sulfonium analogue, 14 : 0 (30%), 18 : 1 (12%), 18 : 2 (8%), 20 : 5 (27%) and 22 : 6 (4%); and for the sulfoquinovosyl diglyceride (two species, respectively), 14 : 0 (9%, 22%), 16 : 0 (16%, 28%), 18 : 1 (8%, 22%), 20 : 5 (42%, 23%) and 22 : 6 (14%, 2%). Traces of lyso-derivatives of sulfoquinovosyl diglyceride and phosphatidyl sulfocholine were also detected. The deoxyceramide sulfonate and the phosphatidyl sulfocholine represent novel membrane lipid components not previously detected in other organisms. They may however have a widespread distribution in marine diatoms and perhaps in marine organisms generally.

A novel sulfonolipid in diatoms.

A new sulfonolipid has been isolated from a non-photosynthetic diatom, Nitzschia alba, by thin-layer and column chromatography on silicic acid, and characterized by 35S-labeling, mobility on thin-layer chromatography, infrared and NMR spectroscopy and products of hydrolysis, as a ceramide sulfonic acid (N-acyl sphingosine-1-sulfonic acid). The long-chain base moiety was shown by identification of the products of periodate or periodate-permanganate oxidation to consist of a C18-trans-sphingosine backbone linked directly by a C-S linkage through C1 to a SO3 group. The N-acyl groups were mainly isoheptadecanoic (64%) and palmitic (26%) acids.

The lipid composition of the non-photosynthetic diatom Nitzschia alba.

The lipid composition of the non-photosynthetic marine diatom, Nitzschia alba, has been quantitatively determined. Triglycerides accounted for 20% of the cell dry weight and 87% of the total lipids. Smaller amounts of 1,2- and 1,3-diglycerides, free sterol (24-methylene cholesterol), hydrocarbons and an unknown component were the remaining neutral lipids detected. Phosphatidylsulfocholine (phosphatidyl S,S-dimethylmercaptoethanol), present in amounts of 0.8% of cell dry weight (35% of total polar lipids), was the major polar lipid component. Other phospholipids were lysophosphatidylsulfocholine, phosphatidylglycerol, phosphatidylinositol and cardiolipin, but both phosphatidylcholine and phosphatidylethanolamine were completely absent. Another novel sulfolipid, deoxyceramide sulfonic acid, as well as the sulfate ester of the free sterol, were also present. Considerable amounts of the four lipids often associated with photosynthetic organisms, mono- and di-galactosyl diglycerides, sulfoquinovosyl diglyceride and phosphatidylglycerol, were identified in N. alba. However, the fatty acid components of the glycosyl diglycerides did not show the high amounts of polyunsaturated acids (18 : 2, 18 : 3) normally found in photosynthesizing organisms. All polar lipids were found to be associated with various cell membrane fractions in N. alba.

Occurrence of phosphatidylsulfocholine, the sulfonium analog of phosphatidylcholine in some diatoms and algae.

A survey of seven species of diatoms, one Euglena sp. and one dinoflagellate sp. for the presence of phosphatidylsulfocholine (PSC), the sulfonium analog of phosphatidylcholine (PC), was carried out using 1H-NMR spectroscopy and ammonia desorption chemical ionization mass spectrometry. PSC alone was found only in a non-photosynthetic diatom, Nitzschia alba. PSC, together with PC, was found in four of the diatoms (Nitzschia angularis, Cylindrotheca fusiformis, Phaeodactylum tricornutum and Navicula pelliculosa) in proportions of 6-24% of the total PC + PSC fraction, but little or no PSC (less than 2%) was detected in the remaining two (Cyclotella nana and Navicula incerta). Little or no PSC (less than 2%) was detected in a Euglena sp. by 1H-NMR but its presence was confirmed by 35S-labeling. The amount of PSC, if any, in the dinoflagellate (Amphidinium carterae) was below the level of detection by 1H-NMR.

Silicon-responsive cDNA clones isolated from the marine diatom Cylindrotheca fusiformis.

In organisms ranging from single-celled algae to mammals, including humans, silicon is essential for, and actively participates in, a variety of life processes. It has become clear that silicon (i) acts as a metabolite affecting a variety of cellular processes, and (ii) regulates gene expression. However, the mechanisms by which silicon (i.e., Na2SiO3.9H2O, in the present study) acts are not clear, due to inherent methodological difficulties. As part of our program to understand how silicon acts in biological systems, we present the first isolation of cDNA clones derived from silicon-responsive mRNAs, from the marine diatom Cylindrotheca fusiformis. We distinguish between clones responding only to silicon starvation and replenishment, and those also responding to other cellular conditions. Some of the clones can be identified by similarity to other genes, and should be useful as probes to isolate genes from other organisms. Isolation of these clones provides the means to (i) identify metabolic pathways affected by silicon, and (ii) investigate the mechanism(s) of silicon-regulated gene expression.

Evaluation of silicon and germanium retention in rat tissues and diatoms during cell and organelle preparation for electron probe microanalysis.

Chemical, radiochemical and x-ray microanalysis assays were used to define parameters of silicon (Si) retention during preparation og biologic samples (rat liver, spleen, kidney, lung, diatoms and cell organelles) for x-ray microanalysis, Due to its longer half-life 68-Fe was used in some cases to trace SI. Leaching of Si from cells and organelles by the aqueous preparation media was overcome by use of the freeze-substitution process. Cells were treated with 30% glycerol hypertonic sucrose medium to reduce ice damage. Embedment in Spurr's low viscosity epoxy resin medium caused no apparent Si loss. A semiquantitative evaluation showed 0.5 x 10-8 to 0.3 x 10-17 g detectable Si in isolated rat liver mitochondria in thin sections, which is within the instrument's range of detection. This study indicateds that the presence of Si in the mitochondria is not the rsult of contamination.

Taxonomic analysis of extremely halophilic archaea isolated from 56-years-old dead sea brine samples.

A taxonomic study comprising both phenotypic and genotypic characterization, has been carried out on a total of 158 extremely halophilic aerobic archaeal strains. These strains were isolated from enrichments prepared from Dead Sea water samples dating from 1936 that were collected by B. E. Volcani for the demonstration of microbial life in the Dead Sea. The isolates were examined for 126 morphological, physiological, biochemical and nutritional tests. Numerical analysis of the data, by using the S(J) coefficient and UPGMA clustering method, showed that the isolates clustered into six phenons. Twenty-two out of the 158 strains used in this study were characterized previously (ARAHAL et al., 1996) and were placed into five phenotypic groups. The genotypic study included both the determination of the guanineplus-cytosine content of the DNA and DNA-DNA hybridization studies. For this purpose, representative strains from the six phenons were chosen. These groups were found to represent some members of three different genera - Haloarcula (phenons A, B, and C), Haloferax (phenons D and E) and Halobacterium (phenon F) - of the family Halobacteriaceae, some of them never reported to occur in the Dead Sea, such as Haloarcula hispanica, while Haloferax volcanii (phenons D and E) was described in the Dead Sea by studies carried out several decades later than Volcani's work.

Identification of the free and conjugated sterol in a non-photosynthetic diatom,Nitzschia alba, as 24-methylene cholesterol.

Previous studies on the sterol fraction of the nonphotosynthetic marine diatom,Nitszchia alba, indicated the major sterol to be either brassicasterol (24R-methylcholesta-5,22-dien-3ß-ol) or 22-dehydrocampesterol (24S-methylcholesta-5,22-dien-3ß-ol) on the basis only of gas chromatographymass spectral analysis. The present studies using nuclear magnetic resonance, infrared, and gas chromatography-mass spectrometry on the free and bound sterol fractions isolated by preparative thin layer chromatography showed the presence in both fractions of a single sterol, with spectral and chromatographic properties identical with those reported for 24-methylenecholesterol (ergosta-5,24(28)-dien-3ß-ol). This sterol may be the precursor of 24-methyl sterols found in diatoms. The bound sterol fraction was found to consist of a single compound identified as 24-methylenecholesterol sulfate. No sterol esters or sterol glycosides were detected.

Fine structure of rabbit articular chondrocytes in tissue culture during logarithmic and confluent stages of growth.

Ultrastructural changes in cultured articular cartilage chondrocytes from rabbit, during two growth phases were examined by transmission and scanning electron microscopy. Cells in logarithmic growth are characterized by an abundance of intracellular lipoid bodies, little development of rough endoplasmic reticulum (RER), and few cytoplasmic microfilaments. As the cells reach confluency there is a concomitant development of RER, organization and abundance of microfilaments, loss of lipoid bodies, and increase in the number of mitochondria. The fine structure of cultured chondrocytes is very similar to that of rabbit cartilage cells in situ, in that numerous lipoid bodies and microfilaments are prominent features in both cases.

Isolation of silicate ionophore(s) from the apochlorotic diatom Nitzschia alba.

An organic extract of Nitzschia alba cells possesses ionophoretic activity towards silicate, as it induces silicate transport across an organic phase or across synthetic lipid membranes. The activity is dependent upon Na+ and prefers silicon to germanium, a congener. The activity can be resolved into two apparently pure fractions by a combination of high performance liquid chromatography and thin-layer chromatography. Preliminary characterization indicates that the compound(s) contains vicinal hydroxyl groups but is devoid of amino, sugar or phosphate groups.

Sodium-dependent silicate transport in the apochlorotic marine diatom Nitzschia alba.

Silicate uptake by Nitzschia alba cells is higher in medium containing Na(+) than in media lacking Na(+) but containing K(+), Rb(+), NH(4) (+), Li(+), or choline(+). The initial rate is inhibited by monensin and gramicidin but not by valinomycin or nigericin and is less sensitive to inhibition by carbonyl cyanide m-chlorophenylhydrazone (CCCP). In isolated membrane vesicles, silicate is taken up when a Na(+) gradient is imposed across the membrane or is generated by cytoplasmic Na(+),K(+)-ATPase. H(+) or K(+) gradients in either direction do not stimulate uptake. Na(+)-gradient-dependent uptake is inhibited by monensin but not by CCCP, valinomycin, or vanadate, which inhibits the cytoplasmic Na(+),K(+)-ATPase. Uptake increases if an internally negative potential is imposed across the membrane. The vesicular uptake shows saturation kinetics with a K(m) of 62 muM and a V(max) of 4.1 nmol/mg of protein per min. In intact cells, the initial rate of silicate uptake increases with pH up to 9.5. Thus, in N. alba, silicate is symported with Na(+), and the transport system is driven by the Na(+) gradient that is generated and maintained across the membrane by the activity of Na(+),K(+)-ATPase.

Studies on the biochemistry and fine structure of silica-shell formation in diatoms : Chemical Changes in the wall of Navicula pelliculosa during its formation.

Wall formation in Navicula pelliculosa was studied in Si-starvation synchrony. Electron microscopy of walls, prepared by mechanical shaking, indicated that they were free, of cytoplasmic contamination. Removal of the frustule, using HF, indicated that a higher ratio of organic material to silica occurred in the girdle bands below the punctae and in the raphe region. The organic material was investigated following incorporation of (14)C. Material added to newly formed walls prior to and during Si-deposition contained more radioactivity in amino acids than in other constituents. Once Si-uptake ceased, material with increased fucose and xylose content became labelled. Secondary material, the main labelled constituents of which were mannose and glucoronic acid, was added to old walls at all times. Si-uptake was investigated using (31)Si. The rate of assimilation increased during the first hour following addition, remained constant over the next three hours, and then decreased markedly during the separation of daughter cells. Varying amounts of (31)Si could be extracted from intact cells, using hot or cold solvents. These results are discussed in relation to the sequence in which proteinaceous material and polysaccharides are formed during morphogenesis of the diatom wall.

The uptake of silicic acid by rat liver mitochondria.

1. To gain insight into a putative role for mitochondria in silicon metabolism, mitochondrial uptake (by which it is meant the removal from the medium) of silicic acid [Si(OH)4] was studied under conditions minimizing SI(OH)4 polymerization. 2. Measurements of mitochondrial respiration and swelling indicated indirectly a significant uptake of Si(OH)4 as a weak acid, but this was not confirmed when 31Si(OH)4 was used as a tracer. 31Si(OH)4 occupied a mitochondrial volume similar to that of 3H2O and was relatively unaffected by mitochondrial energy status and by the pH gradient across the mitochondrial inner membrane. 3. Uptake was directly proportional to Si(OH)4 concentration in the range 0-3 mM. 4. The uptake consisted of two components: under all conditions examined, the greater quantity, amounting to 1-2nmol of Si(OH)4/mg of mitochondrial protein, was bound, a major portion of it external to the inner membrane, with the lesser quantity free within the matrix space. 5. Equilibration of 31Si(OH)4 between medium and matrix was a slow process, having a half-time of approx. 10 min at 22 degrees C. 6. Mersalyl and N-ethylmaleimide inhibited the uptake by preferentially lowering the amount of Si(OH)4 bound. Their action was somewhat variable, depending on the precise nature of the suspending medium, and suggesting that the bound material may represent polymerized forms of Si(OH)4. 7. It is concluded that Si(OH)4 may penetrate the mitochondrial inner membrane by a simple diffusion mechanism.