Enhancing task fMRI preprocessing via individualized model-based filtering of intrinsic activity dynamics.

Brain responses recorded during fMRI are thought to reflect both rapid, stimulus-evoked activity and the propagation of spontaneous activity through brain networks. In the current work, we describe a method to improve the estimation of task-evoked brain activity by first "filtering-out the intrinsic propagation of pre-event activity from the BOLD signal. We do so using Mesoscale Individualized NeuroDynamic (MINDy; Singh et al. 2020b) models built from individualized resting-state data to subtract the propagation of spontaneous activity from the task-fMRI signal (MINDy-based Filtering). After filtering, time-series are analyzed using conventional techniques. Results demonstrate that this simple operation significantly improves the statistical power and temporal precision of estimated group-level effects. Moreover, use of MINDy-based filtering increased the similarity of neural activation profiles and prediction accuracy of individual differences in behavior across tasks measuring the same construct (cognitive control). Thus, by subtracting the propagation of previous activity, we obtain better estimates of task-related neural effects.

Traffic-related metrics and adverse birth outcomes: A systematic review and meta-analysis.

Given the inconsistency of epidemiologic evidence for associations between maternal exposures to traffic-related metrics and adverse birth outcomes, this manuscript aims to provide clarity on this topic. Pooled meta-estimates were calculated using random-effects analyses. Subgroup analyses were conducted by study area, study design, and Newcastle-Ottawa quality score (NOS). Funnel plots and Egger's test were conducted to evaluate the publication bias, and Fail-safe Numbers (Fail-safe N) were measured to evaluate the robustness of models. From the initial 740 studies (last search, July 11, 2019), 26 studies were included in our analysis. The pooled odds ratio for the change in small for gestational age associated with per 500 m decrease in the distance to roads was 1.016 (95% CI: 1.004, 1.029). Subgroup analyses revealed significant positive associations between term low birth weight and traffic density in higher-quality literatures with higher NOS [1.060 (95% CI: 1.002, 1.121)], cohort studies [1.020 (95% CI: 1.006, 1.033)], and studies in North America [1.018 (95% CI: 1.005, 1.131)]. The buffer of traffic density made no difference in the effect size. Traffic density seemed to be a better indicator of traffic pollution than the distance to roads.

Disuse-driven plasticity in the human thalamus and putamen.

Motor adaptation in cortico-striato-thalamo-cortical loops has been studied mainly in animals using invasive electrophysiology. Here, we leverage functional neuroimaging in humans to study motor circuit plasticity in the human subcortex. We employed an experimental paradigm that combined two weeks of upper-extremity immobilization with daily resting-state and motor task fMRI before, during, and after the casting period. We previously showed that limb disuse leads to decreased functional connectivity (FC) of the contralateral somatomotor cortex (SM1) with the ipsilateral somatomotor cortex, increased FC with the cingulo-opercular network (CON) as well as the emergence of high amplitude, fMRI signal pulses localized in the contralateral SM1, supplementary motor area and the cerebellum. From our prior observations, it remains unclear whether the disuse plasticity affects the thalamus and striatum. We extended our analysis to include these subcortical regions and found that both exhibit strengthened cortical FC and spontaneous fMRI signal pulses induced by limb disuse. The dorsal posterior putamen and the central thalamus, mainly CM, VLP and VIM nuclei, showed disuse pulses and FC changes that lined up with fmri task activations from the Human connectome project motor system localizer, acquired before casting for each participant. Our findings provide a novel understanding of the role of the cortico-striato-thalamo-cortical loops in human motor plasticity and a potential link with the physiology of sleep regulation. Additionally, similarities with FC observation from Parkinson Disease (PD) questions a pathophysiological link with limb disuse.

The brainstem's red nucleus was evolutionarily upgraded to support goal-directed action.

The red nucleus is a large brainstem structure that coordinates limb movement for locomotion in quadrupedal animals (Basile et al., 2021). The humans red nucleus has a different pattern of anatomical connectivity compared to quadrupeds, suggesting a unique purpose (Hatschek, 1907). Previously the function of the human red nucleus remained unclear at least partly due to methodological limitations with brainstem functional neuroimaging (Sclocco et al., 2018). Here, we used our most advanced resting-state functional connectivity (RSFC) based precision functional mapping (PFM) in highly sampled individuals (n = 5) and large group-averaged datasets (combined N ~ 45,000), to precisely examine red nucleus functional connectivity. Notably, red nucleus functional connectivity to motor-effector networks (somatomotor hand, foot, and mouth) was minimal. Instead, red nucleus functional connectivity along the central sulcus was specific to regions of the recently discovered somato-cognitive action network (SCAN; (Gordon et al., 2023)). Outside of primary motor cortex, red nucleus connectivity was strongest to the cingulo-opercular (CON) and salience networks, involved in action/cognitive control (Dosenbach et al., 2007; Newbold et al., 2021) and reward/motivated behavior (Seeley, 2019), respectively. Functional connectivity to these two networks was organized into discrete dorsal-medial and ventral-lateral zones. Red nucleus functional connectivity to the thalamus recapitulated known structural connectivity of the dento-rubral thalamic tract (DRTT) and could prove clinically useful in functionally targeting the ventral intermediate (VIM) nucleus. In total, our results indicate that far from being a 'motor' structure, the red nucleus is better understood as a brainstem nucleus for implementing goal-directed behavior, integrating behavioral valence and action plans.

Framewise multi-echo distortion correction for superior functional MRI.

Functional MRI (fMRI) data are severely distorted by magnetic field (B0) inhomogeneities which currently must be corrected using separately acquired field map data. However, changes in the head position of a scanning participant across fMRI frames can cause changes in the B0 field, preventing accurate correction of geometric distortions. Additionally, field maps can be corrupted by movement during their acquisition, preventing distortion correction altogether. In this study, we use phase information from multi-echo (ME) fMRI data to dynamically sample distortion due to fluctuating B0 field inhomogeneity across frames by acquiring multiple echoes during a single EPI readout. Our distortion correction approach, MEDIC (Multi-Echo DIstortion Correction), accurately estimates B0 related distortions for each frame of multi-echo fMRI data. Here, we demonstrate that MEDIC's framewise distortion correction produces improved alignment to anatomy and decreases the impact of head motion on resting-state functional connectivity (RSFC) maps, in higher motion data, when compared to the prior gold standard approach (i.e., TOPUP). Enhanced framewise distortion correction with MEDIC, without the requirement for field map collection, furthers the advantage of multi-echo over single-echo fMRI.

Water-soluble carboxymethyl chitosan (WSCC)-modified single-walled carbon nanotubes (SWCNTs) provide efficient adsorption of Pb(ii) from water.

Nanocomposites play a key role in the removal of toxic metal(loid)s from environmental water. In this study, we investigated the adsorption capability of water-soluble carboxymethyl chitosan (WSCC)-modified functionally oxidized single walled carbon nanotubes (oSWCNTs) for rapid and efficient removal of toxic Pb(ii) from water. The WSCC-oSWCNTs nanocomposite was prepared by an acid treatment of SWCNTs followed by an ultrasonic dispersion process using WSCC as dispersant. The morphology and chemical characteristics of the WSCC-oSWCNTs nanocomposite were further identified using various characterization techniques (i.e., transmission electron microscopy, TEM; scanning electron microscopy, SEM; Raman spectra; Fourier transform infrared spectroscopy, FTIR; X-ray photoelectron spectroscopy, XPS; nitrogen adsorption-desorption isotherm test). The efficiency of the adsorption process in batch experiments was investigated via determining various factor effects (i.e. WSCC-oSWCNTs nanocomposite concentration, solution pH, initial Pb(ii) concentration, contact time, and reaction temperature). Kinetic results showed that the adsorption process followed a pseudo-second-order, while an isotherm results study showed that the adsorption process followed the Langmuir and Freundlich isotherm models at the same time. In addition, the van't Hoff equation was used to calculate thermodynamic parameters for assessing the endothermic properties and spontaneity of the adsorption process. The WSCC-oSWCNTs nanocomposite manifested a high adsorption capacity for Pb(ii) (113.63 mg g-1) via electrostatic interactions and ion-exchange, as its adsorption rate could reach up to 98.72%. This study, therefore, provides a novel adsorbent for the removal and detection of harmful residues (i.e. toxic metal(loid)s) from environmental water, such as industry wastewater treatment and chemical waste management.

Effective dispersion of oxidized multi-walled carbon nanotubes using a water-soluble N,O-carboxymethyl chitosan via non-covalent interaction.

Dispersible multi-walled carbon nanotubes (MWCNTs) in water have been widely applied in the nanotechnology field. This study reports a water-soluble N,O-carboxymethyl chitosan(N,O-CMCS) assisted individual dispersion of oxidized multi-walled carbon nanotubes (oMWCNTs) as a dispersant. First, the dispersing agent N,O-CMCS was successfully synthesized using the nucleophilic substitution of deacetylated chitosan with chloroacetic acid in an alkaline solution. It was further confirmed using Fourier transform infrared spectroscopy (FTIR). Second, after the treatment with the concentrated hydrochloric acid, the prepared oMWCNTs were dispersed in an aqueous solution of N,O-CMCS under ultrasonic vibrations. Finally, the dispersed aqueous solution was subjected to centrifugation to collect the supernatant of individually dispersed N,O-CMCS/oMWCNTs. In addition, transmission electron microscopy (TEM) further confirmed that the purity of oMWCNTs was improved after the acidification progress. Besides, the stability of the dispersion solution was evidenced by digital photos of oMWCNTs dispersed by N,O-CMCS before and after. Moreover, the UV-vis spectrum (the characteristic peak of dispersed oMWCNTs downshifted 13 nm) showed that the supernatant was enriched by the individual oMWCNTs. In particular, the analytical results of FTIR (the -NH2 band of N,O-CMCS downshifted 7 cm-1), resonance Raman spectroscopy (the I D/I G ratio of dispersed oMWCNTs only increased 0.14), and XRD identified the formation of a non-convalent interaction between N,O-CMCS and oMWCNTs. These findings reveal the dispersing nature of N,O-CMCS towards oMWCNTs in water media.

The Dual Mechanisms of Cognitive Control dataset, a theoretically-guided within-subject task fMRI battery.

Cognitive control is a critical higher mental function, which is subject to considerable individual variation, and is impaired in a range of mental health disorders. We describe here the initial release of Dual Mechanisms of Cognitive Control (DMCC) project data, the DMCC55B dataset, with 55 healthy unrelated young adult participants. Each participant performed four well-established cognitive control tasks (AX-CPT, Cued Task-Switching, Sternberg Working Memory, and Stroop) while undergoing functional MRI scanning. The dataset includes a range of state and trait self-report questionnaires, as well as behavioural tasks assessing individual differences in cognitive ability. The DMCC project is on-going and features additional components (e.g., related participants, manipulations of cognitive control mode, resting state fMRI, longitudinal testing) that will be publicly released following study completion. This DMCC55B subset is released early with the aim of encouraging wider use and greater benefit to the scientific community. The DMCC55B dataset is suitable for benchmarking and methods exploration, as well as analyses of task performance and individual differences.

[Relative validity of food frequency questionnaire for estimating dietary iron intake of students with anemia].

OBJECTIVE: To assess the relative validity of food frequency questionnaire (FFQ) for estimating dietary iron and its related nutrients and food intakes of students with anemia. METHODS: FFQ and weighed dietary records combining with 24h dietary recalls (adopted as reference method) were applied respectively to investigate the diet of 156 anemic students aged 10 - 12 years. The average dietary intakes of iron, haem iron, non-haem iron, vitamin C, meat/fish/poultry and eggs were estimated. Wilcoxon matched-pairs signed-rank test, Spearman's rank correlation, cross-classification and actual values for surrogate categories were performed to assess the relative validity of FFQ. RESULTS: Compared with the reference method, dietary iron and its related nutrients and food intakes were overestimated by FFQ, and bear poor correlation with reference method. The results of cross-classification and actual values for surrogate categories indicated that the low and high intakes of all dietary components could not be clearly differentiated by FFQ. CONCLUSION: FFQ presents unsatisfactory accuracy in assessing dietary intakes of iron and related nutrients of anemic students in less developed districts.

Scalable surrogate deconvolution for identification of partially-observable systems and brain modeling.

OBJECTIVE: For many biophysical systems, direct measurement of all state-variables, in - vivo is not feasible. Thus, a key challenge in biological modeling and signal processing is to reconstruct the activity and structure of interesting biological systems from indirect measurements. These measurements are often generated by approximately linear time-invariant dynamical interactions with the hidden system and may therefore be described as a convolution of hidden state-variables with an unknown kernel. APPROACH: In the current work, we present an approach termed surrogate deconvolution, to directly identify such coupled systems (i.e. parameterize models). Surrogate deconvolution reframes certain non linear partially-observable identification problems, which are common in neuroscience/biology, as analytical objectives that are compatible with almost any user-chosen optimization procedure. MAIN RESULTS: We show that the proposed technique is highly scalable, low in computational complexity, and performs competitively with the current gold-standard in partially-observable system estimation: the joint Kalman Filters (Unscented and Extended). We show the benefits of surrogate deconvolution for model identification when applied to simulations of the Local Field Potential and blood oxygen level dependent (BOLD) signal. Lastly, we demonstrate the empirical stability of Hemodynamic Response Function (HRF) kernel estimates for Mesoscale Individualized NeuroDynamic (MINDy) models of individual human brains. The recovered HRF parameters demonstrate reliable individual variation as well as a stereotyped spatial distribution, on average. SIGNIFICANCE: These results demonstrate that surrogate deconvolution promises to enhance brain-modeling approaches by simultaneously and rapidly fitting large-scale models of brain networks and the physiological processes which generate neuroscientific measurements (e.g. hemodynamics for BOLD fMRI).

Efficacy of different iron fortificants in wheat flour in controlling iron deficiency.

OBJECTIVE: To observe the different impacts of electrolytic iron, FeSO4, and NaFeEDTA on body iron store of anemic school students. METHODS: Four hundreds anemic students at the age of 11-18 years were divided into four groups. Of which, three consumed different iron fortificants from wheat flour as food vehicle for six months and one consumed non-fortified flour (control). The fortification level of electrolytic iron, FeSO4, and NaFeEDTA was 60 mg Fe/kg, 30 mg Fe/kg, and 20 mg Fe/kg, respectively. Blood samples were collected at 0, 2, 4, and 6 months and hemoglobin (Hb), serum ferritin (SF), and transferrin receptor (TfR) were measured. RESULTS: The hemoglobin levels in three intervention groups increased, the increments of Hb in the NaFeEDTA group were significantly higher than that in the other groups. SF and TfR levels increased in the tested groups and body iron store in the NaFeEDTA group was higher than that in the other groups. These parameters did not show any significant changes in the control group. CONCLUSION: NaFeEDTA and FeSO4 fortified wheat flour has positive impacts on iron status in anemic students and NaFeEDTA is more effective than FeSO4, while electrolytic iron is less effective in improving iron store in anemic students.

Early identity recognition of familiar faces is not dependent on holistic processing.

It is widely accepted that holistic processing is critical for early face recognition, but recent work has suggested a larger role for feature-based processing. The earliest step in familiar face recognition is thought to be matching a perceptual representation of a familiar face to a stored representation of that face, which is thought to be indexed by the N250r event-related potential (ERP). In the current face-priming studies, we investigated whether this perceptual representation can be effectively activated by feature-based processing. In the first experiment, prime images were familiar whole faces, isolated eyes or isolated mouths. Whole faces and isolated eyes, but not isolated mouths, effectively modulated the N250r. In the second experiment, prime images were familiar whole faces presented either upright or inverted. Inverted face primes were no less effective than upright face primes in modulating the N250r. Together, the results of these studies indicate that activation of the earliest face recognition processes is not dependent on holistic processing of a typically configured face. Rather, feature-based processing can effectively activate the perceptual memory of a familiar face. However, not all features are effective primes as we found eyes, but not mouths, were effective in activating early face recognition.

[Association Between Fine Particulate Matter and Asthma Hospital Outpatient Visits in Hangzhou].

To study the short-term effects of air pollution on asthma visits and differences in susceptibility to various groups of people, data for asthma visits from January 1, 2013 to December 31, 2015 were obtained from a Hangzhou hospital. Considering the nonlinear relationships among concentration of air pollutants, respiratory hospital outpatient visits and meteorological factors, Generalized Additive Models (GAM) and stratification analysis were used to explore the lag effects and differences in people stratifications. The natural cubic spline function was used for smoothing the average temperature, the average relative humidity and the long-term trend, using dummy variables to control the effect of the day of the week and of holidays. Correlation of PM2.5, NO2 and SO2 daily mean concentrations were significant (under 0.01) in Spearman correlation analysis, while the correlations of daily mean temperature and 3 pollutants were significantly negative. The lag effects of PM2.5 concentration on outpatient visits of asthma peaked at 3-5 days. The relative risk of asthma reached maximum at lag day 5 as 1.0056 (95% CI:1.0021-1.0091), with per 10 µg·m-3 increment of PM2.5 concentration. The relative risk of asthma outpatient visits of all groups of patients were statistically significant (P<0.05). The relative risk of asthma outpatient visits of males and young and middle-aged group were statistically significant at lag days 3-5, and for females and the elderly, were statistically significant at lag day 5. With the introduction of the effects of NO2, the relative risk of asthma outpatient visits increased at lag 5 day in co-pollutant models. The authors concluded that the increase of PM2.5 may be related to the increase of asthma hospital outpatient visits within 3-5 days in Hangzhou, and the effects on male group and elderly group were more definite.

Air pollution in China: Status and spatiotemporal variations.

In recent years, China has experienced severe and persistent air pollution associated with rapid urbanization and climate change. Three years' time series (January 2014 to December 2016) concentrations data of air pollutants including particulate matter (PM2.5 and PM10) and gaseous pollutants (SO2, NO2, CO, and O3) from over 1300 national air quality monitoring sites were studied to understand the severity of China's air pollution. In 2014 (2015, 2016), annual population-weighted-average (PWA) values in China were 65.8 (55.0, 50.7) µg m-3 for PM2.5, 107.8 (91.1, 85.7) µg m-3 for PM10, 54.8 (56.2, 57.2) µg m-3 for O3_8 h, 39.6 (33.3, 33.4) µg m-3 for NO2, 34.1 (26, 21.9) µg m-3 for SO2, 1.2 (1.1, 1.1) mg m-3 for CO, and 0.60 (0.59, 0.58) for PM2.5/PM10, respectively. In 2014 (2015, 2016), 7% (14%, 19%), 17% (27%, 34%), 51% (67%, 70%) and 88% (97%, 98%) of the population in China lived in areas that meet the level of annual PM2.5, PM10, NO2, and SO2 standard metrics from Chinese Ambient Air Quality Standards-Grade II. The annual PWA concentrations of PM2.5, PM10, O3_8 h, NO2, SO2, CO in the Northern China are about 40.4%, 58.9%, 5.9%, 24.6%, 96.7%, and 38.1% higher than those in Southern China, respectively. Though the air quality has been improving recent years, PM2.5 pollution in wintertime is worsening, especially in the Northern China. The complex air pollution caused by PM and O3 (the third frequent major pollutant) is an emerging problem that threatens the public health, especially in Chinese mega-city clusters. NOx controls were more beneficial than SO2 controls for improvement of annual PM air quality in the northern China, central, and southwest regions. Future epidemiologic studies are urgently required to estimate the health impacts associated with multi-pollutants exposure, and revise more scientific air quality index standards.

Association between mannose-binding lectin and HIV infection and progression in a Chinese population.

Mannose-binding lectin (MBL) is a circulating pattern recognition molecule involved in the innate immune system that mediates phagocytosis and activates complement by binding to a carbohydrate extremity. Some MBL genetic polymorphisms result in deficient protein levels and increased susceptibility to infection. The objective of this study was to investigate the association between MBL2 exon 1 polymorphisms, serum levels of normal MBL, and HIV-1 infection and progression in a Chinese population. A total of 1075 adult patients infected with HIV-1 (532 male and 543 female) were recruited. The genotype of 145 patients was determined and the genotype frequencies compared with healthy population controls. The disease status of patients was evaluated for different MBL2 genotypes and normal MBL serum levels. MBL2 exon 1 polymorphisms (A/O or O/O) were significantly more common in HIV-1-infected patients than in the healthy controls. Patients in clinical categories B/C with severe diseases were significantly more likely to have one variant allele. There was a statistical relationship between MBL2 genotypes and MBL serum levels. In addition, higher CD4(+) T cell counts and ratios of CD4(+) T cells:CD8(+) T cells were observed in patients with medium MBL levels than with low or high MBL levels. Patients with mild diseases were also more likely to have medium MBL levels than high levels. Analysis of MBL levels with respect to sex yielded differences. Median MBL levels were substantially higher in males than in females in HIV-1-infected patients. Lower CD4(+) T cell counts were detected in males with low MBL levels, but the opposite was observed in females. Our results suggest that genetic polymorphisms resulting in MBL deficiency are associated with increased susceptibility to HIV-1 infection and disease progression in the studied population. Moreover, serum circulating levels of normal MBL in HIV-1-infected patients could be an important auxiliary biological marker in association with CD4(+) T cell counts in the evaluation of HIV-1 disease progression. The sex differences in the regulation of MBL serum levels during infection merit further exploration.

Effects of wheat flour fortified with different iron fortificants on iron status and anemia prevalence in iron deficient anemic students in Northern China.

OBJECTIVES: To compare the effects of wheat flours fortified with NaFeEDTA, FeSO4 and elemental iron (electrolytic iron), in improving iron status in anemic students. METHODS: Four hundreds anemic students (11 to 18 years old) were divided into four groups and given wheat flour fortified with different iron fortificants at different concentrations: control group (no added iron); NaFeEDTA group (20 mg Fe/kg); FeSO4 group (30 mg Fe/kg); and elemental iron group (60 mg Fe/kg). The trial lasted for 6 months and the following parameters were examined every 2 months: whole blood hemoglobin, free erythrocyte protoporphyrin, serum ferritin, serum iron, total iron binding capacity and transferrin receptor. RESULTS: The flour consumption in the 4 groups was 300-400 g/person/day, accounted for 70% of total cereal consumption in the diets. There were no significant differences in flour consumption among the 4 groups. Blood hemoglobin level increased in all the 3 intervened groups, but the increment in the NaFeEDTA group was significantly higher and earlier than the other 2 groups; and only 1% of the subjected remained anemic at the end of the trial in the NaFeEDTA group, while 40% and 60% of the subjects in the FeSO4 and electrolytic iron group remained anemic, respectively. The order of improvements in free erythrocyte protoporphyrin, serum ferritin and transferring receptor levels were: NaFeEDTA > FeSO4 > electrolytic iron. No significant changes were found in the control group on all the tested parameters during the trial. CONCLUSIONS: The results indicated that even NaFeEDTA was added at a lower level, it has better effects than FeSO4 and elemental iron on controlling iron deficiency anemia and improving iron status in anemic children; while elemental iron was the least effective.

Therapeutic effects of NaFeEDTA-fortified soy sauce in anaemic children in China.

The therapeutic effects of NaFeEDTA-fortified soy sauce on anaemic students were investigated. Three hundred and four iron-deficient anaemic school children (11-17 years) were randomly assigned to three treatment groups: control group (consuming non-fortified soy sauce), low-NaFeEDTA group (consuming fortified soy sauce, providing 5 mg Fe/day) and high-NaFeEDTA group (consuming fortified soy sauce, providing 20 mg Fe/day). Blood haemoglobin (Hb) levels were determined before and after 1 month, 2 months and 3 months of intervention. In addition, serum iron (SI), serum ferritin (SF), free erythrocytic porphyrin (FEP), total iron binding capability (TIBC) and transferritin (TF) were measured before and after consumption of soy sauce for 3 months. The results obtained herein show that the parameters measured were not changed remarkably within the 3-month intervention in the control group (P < 0.05). However, increased Hb, SI, SF and TF levels and decreased TIBC and FEP levels were observed in both the high-NaFeEDTA group (P <0.01) and the low-NaFeEDTA group (P < 0.05). The effectiveness of iron intervention in the low-NaFeEDTA group and high-NaFeEDTA group had no statistical significance after 3 months. It was concluded that nutritional intervention for anaemic students using NaFeEDTA-fortified soy sauce could play a positive role in the improvement of iron status and control of anaemia.