Use of scaled dinosaur bones in taphonomic water flume experiments.

Laboratory water flumes are artificial troughs of moving water widely used in hydraulic studies of fluvial systems to investigate real-world problems at smaller, more manageable scales. Water flumes have also been used to understand bone transportation sorting and bone orientation found in the fossil record using actual bones. To date, these studies have not involved scaled bones. A 1/12 scale model of a 21.8-m long skeleton of Apatosaurus, a long-necked sauropod dinosaur from the Late Jurassic, was used to explore three problems at Dinosaur National Monument (USA) that cannot be explained by tradition bone flume studies: (1) why there is an abrupt bend in articulated vertebrae, (2) why articulated dorsals are inverted relative to the pelvis, and (3) how bone jams form. The flume experiments established that (1) bed friction with the wing-like transverse processes of vertebrae resists the force of the water flow, whereas those vertebrae lacking the processes are free to pivot in the flow; (2) elevation of the dorsal vertebrae by the transverse processes subjects the vertebrae to the energy of the flow stream, which causes the vertebrae to flip. Computation fluid dynamics (CFD) software shows this flip was due to differential pressure on the upstream and downstream sides. (3) The formation and growth of bone clusters or jams (analogous to log jams in rivers) occur as transported bones pile against an initial obstruction and jammed bones themselves become obstacles. These preliminary studies show that scale models can provide valuable insights into certain taphonomic problems that cannot be obtained by traditional bone flume studies.

The effects of clays on bacterial community composition during arthropod decay.

Fossilization, or the transition of an organism from the biosphere to the geosphere, is a complex mechanism involving numerous biological and geological variables. Bacteria are one of the most significant biotic players to decompose organic matter in natural environments, early on during fossilization. However, bacterial processes are difficult to characterize as many different abiotic conditions can influence bacterial efficiency in degrading tissues. One potentially important variable is the composition and nature of the sediment on which a carcass is deposited after death. We experimentally examined this by decaying the marine shrimp Palaemon varians underwater on three different clay sediments. Samples were then analyzed using 16S ribosomal RNA sequencing to identify the bacterial communities associated with each clay system. Results show that samples decaying on the surface of kaolinite have a lower bacterial diversity than those decaying on the surface of bentonite and montmorillonite, which could explain the limited decay of carcasses deposited on this clay. However, this is not the only role played by kaolinite, as a greater proportion of gram-negative over gram-positive bacteria is observed in this system. Gram-positive bacteria are generally thought to be more efficient at recycling complex polysaccharides such as those forming the body walls of arthropods. This is the first experimental evidence of sediments shaping an entire bacterial community. Such interaction between sediments and bacteria might have contributed to arthropods' exquisite preservation and prevalence in kaolinite-rich Lagerstätten of the Cambrian Explosion. Supplementary Information: The online version contains supplementary material available at 10.1186/s13358-024-00324-7.

The complex role of microbial metabolic activity in fossilization.

Bacteria play an important role in the fossilization of soft tissues; their metabolic activities drive the destruction of the tissues and also strongly influence mineralization. Some environmental conditions, such as anoxia, cold temperatures, and high salinity, are considered widely to promote fossilization by modulating bacterial activity. However, bacteria are extremely diverse, and have developed metabolic adaptations to a wide range of stressful conditions. Therefore, the influence of the environment on bacterial activity, and of their metabolic activity on fossilization, is complex. A number of examples illustrate that simple, general assumptions about the role of bacteria in soft tissue fossilization cannot explain all preservational pathways: (i) experimental results show that soft tissues of cnidaria decay less in oxic than anoxic conditions, and in the fossil record are found more commonly in fossil sites deposited under oxic conditions rather than anoxic environments; (ii) siderite concretions, which often entomb soft tissue fossils, precipitate due to a complex mixture of sulfate- and iron reduction by some bacterial species, running counter to original theories that iron reduction is the primary driver of siderite concretion growth; (iii) arthropod brains, now widely accepted to be preserved in many Cambrian fossil sites, are one of the first structures to decay in taphonomic experiments, indicating that their fossilization processes are complex and influenced by bacterial activity. In order to expand our understanding of the complex process of bacterially driven soft tissue fossilization, more research needs to be done, on fossils themselves and in taphonomic experiments, to determine how the complex variation in microbial metabolic activity influences decay and mineralization.

Anoxia can increase the rate of decay for cnidarian tissue: Using Actinia equina to understand the early fossil record.

An experimental decay methodology is developed for a cnidarian model organism to serve as a comparison to the many previous such studies on bilaterians. This allows an examination of inherent bias against the fossilisation of cnidarian tissue and their diagnostic characters, under what conditions these occur, and in what way. The decay sequence of Actinia equina was examined under a series of controlled conditions. These experiments show that cnidarian decay begins with an initial rupturing of the epidermis, followed by rapid loss of recognisable internal morphological characters. This suggests that bacteria work quicker on the epidermis than autolysis does on the internal anatomy. The data also show that diploblastic tissue is not universally decayed more slowly under anoxic or reducing conditions than under oxic conditions. Indeed, some cnidarian characters decay more rapidly under anoxic conditions than they do under oxic conditions. This suggests the decay pathways acting may be different to those affecting soft bilaterian tissue such as soft epidermis and internal organs. What is most important in the decay of soft polyp anatomy is the microbial community, which can be dominated by oxic or anoxic bacteria. Different Lagerstätte, even of the same type, will inevitably have subtle difference in their bacterial communities, which among other factors, could be a control on soft polyp preservation leading to either an absence of compelling soft anthozoans (Burgess Shale) or an astonishing abundance (Qingjiang biota).

Taphonomic experiments resolve controls on the preservation of melanosomes and keratinous tissues in feathers.

Fossils are a key source of data on the evolution of feather structure and function through deep time, but their ability to resolve macroevolutionary questions is compromised by an incomplete understanding of their taphonomy. Critically, the relative preservation potential of two key feather components, melanosomes and keratinous tissue, is not fully resolved. Recent studies suggesting that melanosomes are preferentially preserved conflict with observations that melanosomes preserve in fossil feathers as external moulds in an organic matrix. To date, there is no model to explain the latter mode of melanosome preservation. We addressed these issues by degrading feathers in systematic taphonomic experiments incorporating decay, maturation and oxidation in isolation and combination. Our results reveal that the production of mouldic melanosomes requires interactions with an oxidant and is most likely to occur prior to substantial maturation. This constrains the taphonomic conditions under which melanosomes are likely to be fossilized. Critically, our experiments also confirm that keratinous feather structures have a higher preservation potential than melanosomes under a range of diagenetic conditions, supporting hitherto controversial hypotheses that fossil feathers can retain degraded keratinous structures.

Palaeoecological implications of the preservation potential of soft-bodied organisms in sediment-density flows: testing turbulent waters.

Interpreting how far organisms within fossil assemblages may have been transported and if they all originated from the same location is fundamental to understanding whether they represent true palaeocommunities. In a three-factorial experimental design, we used an annular flume to generate actualistic sandy sediment-density flows that were fast (2 ms-1) and fully turbulent in order to test the effects of flow duration, sediment concentration, and grain angularity on the states of bodily damage experienced by the freshly euthanized polychaete Alitta virens. Results identified statistically significant effects of flow duration and grain angularity. Increasing sediment concentration had a statistically significant effect with angular sediment but not with rounded sediment. Our experiments demonstrate that if soft-bodied organisms such as polychaetes were alive and then killed by a flow then they would have been capable of enduring prolonged transport in fast and turbulent flows with little damage. Dependent upon sediment concentration and grain angularity, specimens were capable of remaining intact over flow durations of between 5 and 180 min, equating to transport distances up to 21.6 km. This result has significant palaeoecological implications for fossil lagerstätten preserved in deposits of sediment-density flows because the organisms present may have been transported over substantial distances and therefore may not represent true palaeocommunities.