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1.
Fish Shellfish Immunol ; 128: 67-73, 2022 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-35921931

RESUMEN

The sea cucumber Apostichopus japonicus is one of the most dominant and economically important aquaculture species in China. Saponin, which possesses notable biological and pharmacological properties, is a key determinant of the nutritional and health value of A. japonicus. In the present study, we amplified the full-length cDNA of a phosphomevalonate kinase (PMK) gene (named AjPMK) using rapid amplification of cDNA ends (RACE). Subsequently, we engineered a recombinant AjPMK (rAjPMK) protein and assessed its enzymatic activity by enzyme-linked immunosorbent assay (ELISA). Proteins that interact with rAjPMK were screened and identified via pull-down assay combined with liquid chromatography with tandem mass spectrometry (LC-MS/MS). We found that the full-length cDNA of AjPMK contained 1354 bp and an open reading frame (ORF) of 612 bp. The AjPMK protein was predicted not to contain a signal peptide but to contain a phosphonolate kinase domain seen in higher eukaryotes and a P-loop with a relatively conserved nucleoside triphosphate hydrolase domain. The molecular weight of the AjPMK protein was estimated to be 23.81 kDa, and its isoelectric point was predicted to be 8.72. Phylogenetic analysis showed that AjPMK had a closer evolutionary relationship with genes from starfish than with those of other selected species. Besides, we found that rAjPMK synthesized mevalonate-5-diphosphate, interacted either directly or indirectly with crucial pattern recognition receptors (PRRs) and was regulated by immune-related processes, including antioxidative reactions, stress resistance responses and enzyme hydrolysis. Moreover, AjPMK also interacted with farnesyl pyrophosphate synthase, an enzyme reported to be involved in saponin biosynthesis. Together, our findings implied that AjPMK may be directly involved in saponin biosynthesis and the regulation of various innate immune processes.


Asunto(s)
Saponinas , Pepinos de Mar , Stichopus , Secuencia de Aminoácidos , Animales , Secuencia de Bases , Cromatografía Liquida , Clonación Molecular , ADN Complementario/genética , ADN Complementario/metabolismo , Difosfatos , Hidrolasas/genética , Hidrolasas/metabolismo , Inmunidad Innata/genética , Ácido Mevalónico/análogos & derivados , Nucleósidos , Fosfotransferasas (Aceptor del Grupo Fosfato) , Filogenia , Señales de Clasificación de Proteína/genética , Pepinos de Mar/genética , Espectrometría de Masas en Tándem
2.
Bioorg Chem ; 127: 105971, 2022 10.
Artículo en Inglés | MEDLINE | ID: mdl-35749855

RESUMEN

Liver fibrosis is an important process in chronic liver disease and is strongly related to poor prognosis. Dehydromevalonolactone (C8) is a natural product isolated from a fungus of Fusarium sp. CPCC 401218, and its pharmacological activity has never been reported before. In this study, the potential of C8 as an anti-hepatic fibrosis agent was investigated. In human hepatic stellate cell (HSC) line LX-2, C8 suppressed the increased expression of COL1A1 and α-SMA induced by TGFß1, which indicated that C8 could repress the activation of HSCs. In bile duct ligated rats, C8 administration (100 mg/kg, i.p.) markedly attenuated liver injury, fibrosis, and inflammation, and suppressed the expression of the macrophage surface marker F4/80. In terms of mechanism, C8 treatment blocked the activation of the NLRP3 inflammasome, which was stimulated by LPS and nigericin in bone marrow-derived macrophages (BMDMs) and companied by the release of active IL-1ß. In addition, the activation of LX-2 cells induced by IL-1ß released from BMDMs was also inhibited after C8 administration, which indicated that C8 repressed HSCs activation by inhibiting the activation of NLRP3 inflammasome in macrophages. Furthermore, C8 exhibited the effects of anti-fibrosis and inhibiting the expression of NLRP3 inflammasome in non-alcoholic steatohepatitis (NASH) mice. Finally, C8 can be commendably absorbed in vivo and was safe for mice at the concentration of 1000 mg/kg (p.o.). In summary, our study reveals that C8 ameliorates HSCs activation and liver fibrosis in cholestasis rats and NASH mice by inhibiting NLRP3 inflammasome in macrophages, and C8 might be a safe and effective candidate for the treatment of liver fibrosis.


Asunto(s)
Inflamasomas , Ácido Mevalónico/análogos & derivados , Enfermedad del Hígado Graso no Alcohólico , Animales , Fibrosis , Humanos , Inflamasomas/metabolismo , Inflamación/metabolismo , Hígado/metabolismo , Cirrosis Hepática/inducido químicamente , Cirrosis Hepática/tratamiento farmacológico , Cirrosis Hepática/metabolismo , Ácido Mevalónico/análisis , Ácido Mevalónico/farmacología , Ácido Mevalónico/uso terapéutico , Ratones , Ratones Endogámicos C57BL , Proteína con Dominio Pirina 3 de la Familia NLR/metabolismo , Enfermedad del Hígado Graso no Alcohólico/tratamiento farmacológico , Ratas
3.
J Nat Prod ; 84(10): 2749-2754, 2021 10 22.
Artículo en Inglés | MEDLINE | ID: mdl-34597517

RESUMEN

The mevalonate pathway is an upstream terpenoid biosynthetic route of terpenoids for providing the two five-carbon units, dimethylallyl diphosphate, and isopentenyl diphosphate. Recently, trans-anhydromevalonate-5-phosphate (tAHMP) was isolated as a new biosynthetic intermediate of the archaeal mevalonate pathway. In this study, we would like to report the first synthesis of tAHMP and its enzymatic transformation using one of the key enzymes, mevalonate-5-phosphate dehydratase from a hyperthermophilic archaeon, Aeropyrum pernix. Starting from methyl tetrolate, a Cu-catalyzed allylation provided an E-trisubstituted olefin in a stereoselective manner. The resulting E-olefin was transformed to tAHMP by cleavage of the olefin and phosphorylation. The structure of the synthetic tAHMP was unambiguously determined by NOESY analysis.


Asunto(s)
Aeropyrum/química , Ácido Mevalónico/química , Organofosfatos/química , Terpenos/química , Aeropyrum/enzimología , Hemiterpenos , Hidroliasas/metabolismo , Ácido Mevalónico/análogos & derivados , Estructura Molecular , Compuestos Organofosforados
4.
Org Biomol Chem ; 18(3): 518-529, 2020 01 22.
Artículo en Inglés | MEDLINE | ID: mdl-31854421

RESUMEN

Mevalonate diphosphate decarboxylase (MDD) catalyses a crucial step of the mevalonate pathway via Mg2+-ATP-dependent phosphorylation and decarboxylation reactions to ultimately produce isopentenyl diphosphate, the precursor of isoprenoids, which is essential to bacterial functions and provides ideal building blocks for the biosynthesis of isopentenols. However, the metal ion(s) in MDD has not been unambiguously resolved, which limits the understanding of the catalytic mechanism and the exploitation of enzymes for the development of antibacterial therapies or the mevalonate metabolic pathway for the biosynthesis of biofuels. Here by analogizing structurally related kinases and molecular dynamics simulations, we constructed a model of the MDD-substrate-ATP-Mg2+ complex and proposed that MDD requires two Mg2+ ions for maintaining a catalytically active conformation. Subsequent QM/MM studies indicate that MDD catalyses the phosphorylation of its substrate mevalonate diphosphate (MVAPP) via a direct phosphorylation reaction, instead of the previously assumed catalytic base mechanism. The results here would shed light on the active conformation of MDD-related enzymes and their catalytic mechanisms and therefore be useful for developing novel antimicrobial therapies or reconstructing mevalonate metabolic pathways for the biosynthesis of biofuels.


Asunto(s)
Proteínas Bacterianas/química , Carboxiliasas/química , Ácido Mevalónico/análogos & derivados , Adenosina Trifosfato/química , Secuencia de Aminoácidos , Dominio Catalítico , Teoría Funcional de la Densidad , Magnesio/química , Ácido Mevalónico/química , Modelos Químicos , Simulación de Dinámica Molecular , Fosforilación , Staphylococcus epidermidis/enzimología
5.
Protein Expr Purif ; 163: 105454, 2019 11.
Artículo en Inglés | MEDLINE | ID: mdl-31301429

RESUMEN

Pogostemon cablin is an important commercial source of patchouli oil, whose main active ingredient is patchouli alcohol. This sesquiterpene is a product of the mevalonate pathway, in which 3-hydroxy-3-methyl-glutaryl-coenzyme A reductase (HMGCR) is the rate-limiting enzyme. In this study, P. cablin HMGCR cDNA, comprising 2209 nucleotides encoding 425 amino acid residues was isolated, and bioinformatics analysis was used to analyze the protein sequence. Based on this analysis, a C-terminal truncated variant was engineered for recombinant expression in E. coli. The 38 kDa recombinant protein was identified by SDS-PAGE, and assayed for mevalonolactone production. According to the PcHMGCR1 gene sequence alignment with other species, the HMGCR protein had obvious resemblance with other plants HMG coenzyme A reductase and had homology with other species including plants, fungi, archaebacteria and animals. The prokaryotic expression vector was constructed by restriction enzyme digestion to be transformed into E. coli to express the recombinant protein, and 38 kDa recombinant protein was identified by the SDS-PAGE. Enzymatic activity was detected using GC-MS and, as a result, mevalonolactone was detected in the in vitro reaction mixture. Differential expression analysis showed that PcHMGCR1 expressed the highest amount in roots. The research results are of great significance for further research on the molecular biosynthesis mechanism of Patchouli alcohol in P. cablin.


Asunto(s)
Hidroximetilglutaril-CoA Reductasas/genética , Pogostemon/enzimología , Animales , Clonación Molecular , ADN Complementario , Escherichia coli , Hidroximetilglutaril-CoA Reductasas/metabolismo , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/metabolismo , Pogostemon/genética , Sesquiterpenos/metabolismo
6.
J Biol Chem ; 292(52): 21340-21351, 2017 12 29.
Artículo en Inglés | MEDLINE | ID: mdl-29025876

RESUMEN

The mevalonate pathway produces isopentenyl diphosphate (IPP), a building block for polyisoprenoid synthesis, and is a crucial pathway for growth of the human bacterial pathogen Enterococcus faecalis The final enzyme in this pathway, mevalonate diphosphate decarboxylase (MDD), acts on mevalonate diphosphate (MVAPP) to produce IPP while consuming ATP. This essential enzyme has been suggested as a therapeutic target for the treatment of drug-resistant bacterial infections. Here, we report functional and structural studies on the mevalonate diphosphate decarboxylase from E. faecalis (MDDEF). The MDDEF crystal structure in complex with ATP (MDDEF-ATP) revealed that the phosphate-binding loop (amino acids 97-105) is not involved in ATP binding and that the phosphate tail of ATP in this structure is in an outward-facing position pointing away from the active site. This suggested that binding of MDDEF to MVAPP is necessary to guide ATP into a catalytically favorable position. Enzymology experiments show that the MDDEF performs a sequential ordered bi-substrate reaction with MVAPP as the first substrate, consistent with the isothermal titration calorimetry (ITC) experiments. On the basis of ITC results, we propose that this initial prerequisite binding of MVAPP enhances ATP binding. In summary, our findings reveal a substrate-induced substrate-binding event that occurs during the MDDEF-catalyzed reaction. The disengagement of the phosphate-binding loop concomitant with the alternative ATP-binding configuration may provide the structural basis for antimicrobial design against these pathogenic enterococci.


Asunto(s)
Carboxiliasas/metabolismo , Ácido Mevalónico/análogos & derivados , Adenosina Trifosfato/metabolismo , Secuencia de Aminoácidos , Proteínas Bacterianas/metabolismo , Sitios de Unión , Carboxiliasas/fisiología , Cristalografía por Rayos X/métodos , Enterococcus faecalis/enzimología , Enterococcus faecalis/metabolismo , Hemiterpenos/biosíntesis , Cinética , Ácido Mevalónico/metabolismo , Compuestos Organofosforados , Especificidad por Sustrato
7.
Plant Physiol ; 174(2): 857-874, 2017 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-28385729

RESUMEN

The cooperation of the mevalonate (MVA) and methylerythritol phosphate (MEP) pathways, operating in parallel in plants to generate isoprenoid precursors, has been studied extensively. Elucidation of the isoprenoid metabolic pathways is indispensable for the rational design of plant and microbial systems for the production of industrially valuable terpenoids. Here, we describe a new method, based on numerical modeling of mass spectra of metabolically labeled dolichols (Dols), designed to quantitatively follow the cooperation of MVA and MEP reprogrammed upon osmotic stress (sorbitol treatment) in Arabidopsis (Arabidopsis thaliana). The contribution of the MEP pathway increased significantly (reaching 100%) exclusively for the dominating Dols, while for long-chain Dols, the relative input of the MEP and MVA pathways remained unchanged, suggesting divergent sites of synthesis for dominating and long-chain Dols. The analysis of numerically modeled Dol mass spectra is a novel method to follow modulation of the concomitant activity of isoprenoid-generating pathways in plant cells; additionally, it suggests an exchange of isoprenoid intermediates between plastids and peroxisomes.


Asunto(s)
Arabidopsis/metabolismo , Dolicoles/química , Modelos Teóricos , Espectrometría de Masa por Ionización de Electrospray/métodos , Terpenos/metabolismo , Isótopos de Carbono , Cromatografía de Gases/métodos , Dolicoles/metabolismo , Eritritol/análogos & derivados , Eritritol/metabolismo , Marcaje Isotópico/métodos , Redes y Vías Metabólicas , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/química , Ácido Mevalónico/metabolismo , Presión Osmótica , Fitosteroles/biosíntesis , Sorbitol/metabolismo , Fosfatos de Azúcar/metabolismo , Xilulosa/análogos & derivados , Xilulosa/química
8.
Chembiochem ; 18(23): 2358-2365, 2017 12 05.
Artículo en Inglés | MEDLINE | ID: mdl-28944564

RESUMEN

Analysis of the volatile terpenes produced by seven fungal strains of the genus Trichoderma by use of a closed-loop stripping apparatus (CLSA) revealed a common production of harzianone, a bioactive, structurally unique diterpenoid consisting of a fused tetracyclic 4,7,5,6-membered ring system. The terpene cyclization mechanism was studied by feeding experiments using selectively 13 C- and 2 H-labeled synthetic mevalonolactone isotopologues, followed by analysis of the incorporation patterns by 13 C NMR spectroscopy and GC/MS. The structure of harzianone was further supported from a 13 C,13 C COSY experiment of the in-vivo-generated fully 13 C-labeled diterpene.


Asunto(s)
Diterpenos/metabolismo , Trichoderma/metabolismo , Isótopos de Carbono/química , Ciclización , Diterpenos/química , Cromatografía de Gases y Espectrometría de Masas , Marcaje Isotópico , Espectroscopía de Resonancia Magnética , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/síntesis química , Ácido Mevalónico/química , Conformación Molecular , Estereoisomerismo , Terpenos/química , Terpenos/metabolismo , Trichoderma/química , Tritio/química
9.
Lipids Health Dis ; 16(1): 250, 2017 Dec 20.
Artículo en Inglés | MEDLINE | ID: mdl-29262834

RESUMEN

BACKGROUND: Statin treatment of hypercholesterolemia is accompanied also with depletion of the mevalonate intermediates, including farnesyl pyrophosphate (FPP) and geranylgeranyl pyrophosphate (GGPP) necessary for proper function of small GTPases. These include Ras proteins, prevalently mutated in pancreatic cancer. In our study, we evaluated the effect of three key intermediates of the mevalonate pathway on GFP-K-Ras protein localization and the gene expression profile in pancreatic cancer cells after exposure to individual statins. METHODS: These effects were tested on MiaPaCa-2 human pancreatic cancer cells carrying a K-Ras activating mutation (G12C) after exposure to individual statins (20 µM). The effect of statins (atorvastatin, lovastatin, simvastatin, fluvastatin, cerivastatin, rosuvastatin, and pitavastatin) and mevalonate intermediates on GFP-K-Ras protein translocation was analyzed using fluorescence microscopy. The changes in gene expression induced in MiaPaCa-2 cells treated with simvastatin, FPP, GGPP, and their combinations with simvastatin were examined by whole genome DNA microarray analysis. RESULTS: All tested statins efficiently inhibited K-Ras protein trafficking from cytoplasm to the cell membrane of the MiaPaCa-2 cells. The inhibitory effect of statins on GFP-K-Ras protein trafficking was partially prevented by addition of any of the mevalonate pathway's intermediates tested. Expressions of genes involved in metabolic and signaling pathways modulated by simvastatin treatment was normalized by the concurrent addition of FPP or GGPP. K-Ras protein trafficking within the pancreatic cancer cells is effectively inhibited by the majority of statins; the inhibition is eliminated by isoprenoid intermediates of the mevalonate pathway. CONCLUSIONS: Our data indicate that the anticancer effects of statins observed in numerous studies to a large extent are mediated through isoprenoid intermediates of the mevalonate pathway, as they influence expression of genes involved in multiple intracellular pathways.


Asunto(s)
Anticolesterolemiantes/farmacología , Células Secretoras de Insulina/efectos de los fármacos , Ácido Mevalónico/farmacología , Fosfatos de Poliisoprenilo/farmacología , Proteínas Proto-Oncogénicas p21(ras)/genética , Sesquiterpenos/farmacología , Atorvastatina/farmacología , Línea Celular Tumoral , Ácidos Grasos Monoinsaturados/farmacología , Fluvastatina , Perfilación de la Expresión Génica , Regulación de la Expresión Génica , Proteínas Fluorescentes Verdes/genética , Proteínas Fluorescentes Verdes/metabolismo , Humanos , Indoles/farmacología , Células Secretoras de Insulina/metabolismo , Células Secretoras de Insulina/patología , Lovastatina/farmacología , Ácido Mevalónico/análogos & derivados , Análisis por Micromatrices , Mutación , Prenilación de Proteína , Transporte de Proteínas/efectos de los fármacos , Proteínas Proto-Oncogénicas p21(ras)/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Transducción de Señal , Simvastatina/farmacología
10.
Biochim Biophys Acta ; 1851(9): 1240-53, 2015 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-26055626

RESUMEN

The mevalonate pathway is tightly linked to cell division. Mevalonate derived non-sterol isoprenoids and cholesterol are essential for cell cycle progression and mitosis completion respectively. In the present work, we studied the effects of fluoromevalonate, a competitive inhibitor of mevalonate diphosphate decarboxylase, on cell proliferation and cell cycle progression in both HL-60 and MOLT-4 cells. This enzyme catalyzes the synthesis of isopentenyl diphosphate, the first isoprenoid in the cholesterol biosynthesis pathway, consuming ATP at the same time. Inhibition of mevalonate diphosphate decarboxylase was followed by a rapid accumulation of mevalonate diphosphate and the reduction of ATP concentrations, while the cell content of cholesterol was barely affected. Strikingly, mevalonate diphosphate decarboxylase inhibition also resulted in the depletion of dNTP pools, which has never been reported before. These effects were accompanied by inhibition of cell proliferation and cell cycle arrest at S phase, together with the appearance of γ-H2AX foci and Chk1 activation. Inhibition of Chk1 in cells treated with fluoromevalonate resulted in premature entry into mitosis and massive cell death, indicating that the inhibition of mevalonate diphosphate decarboxylase triggered a DNA damage response. Notably, the supply of exogenously deoxyribonucleosides abolished γ-H2AX formation and prevented the effects of mevalonate diphosphate decarboxylase inhibition on DNA replication and cell growth. The results indicate that dNTP pool depletion caused by mevalonate diphosphate decarboxylase inhibition hampered DNA replication with subsequent DNA damage, which may have important consequences for replication stress and genomic instability.


Asunto(s)
Carboxiliasas/metabolismo , Desoxirribonucleósidos/metabolismo , Linfocitos/efectos de los fármacos , Ácido Mevalónico/farmacología , Adenosina Trifosfato/metabolismo , Carboxiliasas/antagonistas & inhibidores , Carboxiliasas/genética , Puntos de Control del Ciclo Celular/efectos de los fármacos , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Quinasa 1 Reguladora del Ciclo Celular (Checkpoint 1) , Daño del ADN , Replicación del ADN/efectos de los fármacos , Desoxirribonucleósidos/farmacología , Regulación de la Expresión Génica , Células HL-60 , Halogenación , Hemiterpenos/metabolismo , Histonas/genética , Histonas/metabolismo , Humanos , Linfocitos/citología , Linfocitos/metabolismo , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/metabolismo , Compuestos Organofosforados/metabolismo , Proteínas Quinasas/genética , Proteínas Quinasas/metabolismo , ARN Interferente Pequeño/genética , ARN Interferente Pequeño/metabolismo , Transducción de Señal
11.
Rev Argent Microbiol ; 48(3): 259-263, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27567521

RESUMEN

Endophytic fungi are fungi that colonize internal tissues of plants; several biologically active compounds have been isolated from these fungi. There are few studies of compounds isolated from endophytic fungi of Amazon plants. Thus, this study aimed the isolation and structural identification of ergosterol (1), ergosterol peroxide (2), mevalonolactone (3), cytochalasin B (4) and cytochalasin H (5) from Aspergillus sp. EJC 04, an endophytic fungus from Bauhinia guianensis. The cytochalasin B (4) and the diacetate derivative of cytochalasin B (4a) showed high lethality in the brine shrimp assay. This is the first occurrence of cytochalasins in Amazonian endophytic fungi from B. guianensis.


Asunto(s)
Artemia/efectos de los fármacos , Aspergillus/química , Citocalasina B/toxicidad , Citocalasinas/toxicidad , Endófitos/química , Ergosterol/análogos & derivados , Fabaceae/microbiología , Ácido Mevalónico/análogos & derivados , Acetilación , Animales , Argentina , Aspergillus/aislamiento & purificación , Citocalasina B/química , Citocalasina B/aislamiento & purificación , Citocalasinas/química , Citocalasinas/aislamiento & purificación , Endófitos/aislamiento & purificación , Ergosterol/química , Ergosterol/aislamiento & purificación , Ergosterol/toxicidad , Dosificación Letal Mediana , Ácido Mevalónico/química , Ácido Mevalónico/aislamiento & purificación , Ácido Mevalónico/toxicidad , Estructura Molecular , Resonancia Magnética Nuclear Biomolecular , Espectrometría de Masa por Ionización de Electrospray , Relación Estructura-Actividad
12.
J Biol Chem ; 289(23): 15957-67, 2014 Jun 06.
Artículo en Inglés | MEDLINE | ID: mdl-24755225

RESUMEN

The lack of a few conserved enzymes in the classical mevalonate pathway and the widespread existence of isopentenyl phosphate kinase suggest the presence of a partly modified mevalonate pathway in most archaea and in some bacteria. In the pathway, (R)-mevalonate 5-phosphate is thought to be metabolized to isopentenyl diphosphate via isopentenyl phosphate. The long anticipated enzyme that catalyzes the reaction from (R)-mevalonate 5-phosphate to isopentenyl phosphate was recently identified in a Cloroflexi bacterium, Roseiflexus castenholzii, and in a halophilic archaeon, Haloferax volcanii. However, our trial to convert the intermediates of the classical and modified mevalonate pathways into isopentenyl diphosphate using cell-free extract from a thermophilic archaeon Thermoplasma acidophilum implied that the branch point intermediate of these known pathways, i.e. (R)-mevalonate 5-phosphate, is unlikely to be the precursor of isoprenoid. Through the process of characterizing the recombinant homologs of mevalonate pathway-related enzymes from the archaeon, a distant homolog of diphosphomevalonate decarboxylase was found to catalyze the phosphorylation of (R)-mevalonate to yield (R)-mevalonate 3-phosphate. The product could be converted into isopentenyl phosphate, probably through (R)-mevalonate 3,5-bisphosphate, by the action of unidentified T. acidophilum enzymes fractionated by anion-exchange chromatography. These findings demonstrate the presence of a third alternative "Thermoplasma-type" mevalonate pathway, which involves (R)-mevalonate 3-phosphotransferase and probably both (R)-mevalonate 3-phosphate 5-phosphotransferase and (R)-mevalonate 3,5-bisphosphate decarboxylase, in addition to isopentenyl phosphate kinase.


Asunto(s)
Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/metabolismo , Thermoplasma/metabolismo , Adenosina Trifosfato/metabolismo , Proteínas Arqueales/genética , Proteínas Arqueales/metabolismo , Secuencia de Bases , Sistema Libre de Células , Cromatografía por Intercambio Iónico , Cromatografía en Capa Delgada , Cartilla de ADN , Filogenia
13.
Chembiochem ; 16(2): 337-44, 2015 Jan 19.
Artículo en Inglés | MEDLINE | ID: mdl-25504914

RESUMEN

Terpenoids can be found in almost all forms of life; however, the biosynthesis of bacterial terpenoids has not been intensively studied. This study reports the identification and functional characterization of the gene cluster CYP264B1-geoA from Sorangium cellulosum So ce56. Expression of the enzymes and synthesis of their products for NMR analysis and X-ray diffraction were carried out by employing an Escherichia coli whole-cell conversion system that provides the geoA substrate farnesyl pyrophosphate through simultaneous overexpression of the mevalonate pathway genes. The geoA product was identified as a novel sesquiterpene, and assigned NMR signals unambiguously proved that geoA is an (+)-eremophilene synthase. The very tight binding of (+)-eremophilene (∼0.40 µM), which is also available in S. cellulosum So ce56, and its oxidation by CYP264B1 suggest that the CYP264B1-geoA gene cluster is required for the biosynthesis of (+)-eremophilene derivatives.


Asunto(s)
Sistema Enzimático del Citocromo P-450/genética , Sistema Enzimático del Citocromo P-450/metabolismo , Familia de Multigenes , Myxococcales/genética , Myxococcales/metabolismo , Sesquiterpenos/metabolismo , Transferasas Alquil y Aril/genética , Transferasas Alquil y Aril/metabolismo , Clonación Molecular , Escherichia coli/genética , Escherichia coli/metabolismo , Proteínas Fúngicas/genética , Proteínas Fúngicas/metabolismo , Cromatografía de Gases y Espectrometría de Masas , Hidroxilación , Espectroscopía de Resonancia Magnética , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/metabolismo , Estructura Molecular , Ácido Retinoico 4-Hidroxilasa , Sesquiterpenos/química , Difracción de Rayos X
14.
Appl Environ Microbiol ; 81(7): 2625-34, 2015 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-25636853

RESUMEN

Mevalonate diphosphate decarboxylase (MVD) is an ATP-dependent enzyme that catalyzes the phosphorylation/decarboxylation of (R)-mevalonate-5-diphosphate to isopentenyl pyrophosphate in the mevalonate (MVA) pathway. MVD is a key enzyme in engineered metabolic pathways for bioproduction of isobutene, since it catalyzes the conversion of 3-hydroxyisovalerate (3-HIV) to isobutene, an important platform chemical. The putative homologue from Picrophilus torridus has been identified as a highly efficient variant in a number of patents, but its detailed characterization has not been reported. In this study, we have successfully purified and characterized the putative MVD from P. torridus. We discovered that it is not a decarboxylase per se but an ATP-dependent enzyme, mevalonate-3-kinase (M3K), which catalyzes the phosphorylation of MVA to mevalonate-3-phosphate. The enzyme's potential in isobutene formation is due to the conversion of 3-HIV to an unstable 3-phosphate intermediate that undergoes consequent spontaneous decarboxylation to form isobutene. Isobutene production rates were as high as 507 pmol min(-1) g cells(-1) using Escherichia coli cells expressing the enzyme and 2,880 pmol min(-1) mg protein(-1) with the purified histidine-tagged enzyme, significantly higher than reported previously. M3K is a key enzyme of the novel MVA pathway discovered very recently in Thermoplasma acidophilum. We suggest that P. torridus metabolizes MVA by the same pathway.


Asunto(s)
Alquenos/metabolismo , Carboxiliasas/metabolismo , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/metabolismo , Fosfotransferasas (Aceptor de Grupo Alcohol)/metabolismo , Thermoplasmales/enzimología , Adenosina Trifosfato/metabolismo , Carboxiliasas/genética , Carboxiliasas/aislamiento & purificación , Clonación Molecular , Escherichia coli/enzimología , Escherichia coli/genética , Escherichia coli/metabolismo , Expresión Génica , Fosfotransferasas (Aceptor de Grupo Alcohol)/genética , Fosfotransferasas (Aceptor de Grupo Alcohol)/aislamiento & purificación , Thermoplasmales/genética , Valeratos/metabolismo
15.
Arch Biochem Biophys ; 566: 1-6, 2015 Jan 15.
Artículo en Inglés | MEDLINE | ID: mdl-25499551

RESUMEN

Mevalonate diphosphate decarboxylase (MDD; EC 4.1.1.33) catalyzes the irreversible decarboxylation of mevalonate diphosphate in the mevalonate pathway to form isopentenyl diphosphate, which is a precursor in the biosynthesis of many essential polyisoprenoid natural products, including sterols. In low G/C Gram-positive bacteria, which utilize the mevalonate pathway, MDD is required for cell viability and thus is a potential target for development of antibiotic drugs. To identify potential inhibitors of the enzyme, the National Cancer Institute's Mechanistic Diversity Set library of compounds was screened for inhibitors of Staphylococcus epidermidis MDD. From this screen, the compound Eriochrome Black A (EBA), an azo dye, was found to inhibit the enzyme with an IC50 value<5µM. Molecular docking of EBA into a crystal structure of S. epidermidis MDD suggested binding at the active site. EBA, along with the related Eriochrome B and T compounds, was evaluated for its ability to not only inhibit enzymatic activity but to inhibit bacterial growth as well. These compounds exhibited competitive inhibition towards the substrate mevalonate diphosphate, with Ki values ranging from 0.6 to 2.7µM. Non-competitive inhibition was observed versus ATP indicating binding of the inhibitor in the mevalonate diphosphate binding site, consistent with molecular docking predictions. Fluorescence quenching analyses also supported active site binding of EBA. These eriochrome compounds are effective at inhibiting S. epidermidis cell growth on both solid media and in liquid culture (MIC50 from 31 to 350µM) raising the possibility that they could be developed into antibiotic leads targeting pathogenic low-G/C Gram-positive cocci.


Asunto(s)
Compuestos Azo/química , Proteínas Bacterianas/antagonistas & inhibidores , Carboxiliasas/antagonistas & inhibidores , Inhibidores Enzimáticos/química , Staphylococcus epidermidis/química , Adenosina Trifosfato/química , Proteínas Bacterianas/química , Proteínas Bacterianas/genética , Carboxiliasas/química , Carboxiliasas/genética , Ensayos Analíticos de Alto Rendimiento , Cinética , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/química , Simulación del Acoplamiento Molecular , Unión Proteica , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Bibliotecas de Moléculas Pequeñas , Staphylococcus epidermidis/enzimología
16.
J Nat Prod ; 78(4): 934-8, 2015 Apr 24.
Artículo en Inglés | MEDLINE | ID: mdl-25871540

RESUMEN

Bioassay-guided fractionation of antibacterial extracts from cultures of a basidiomycete from Northern Thailand, which represents a new species of the genus Deconica, yielded the terpenoid deconin A (1), whose structure was elucidated by spectral methods (NMR, HRMS) as a cuparenic/mevalonic acid conjugate. The absolute configuration of 1 was determined after saponification and comparison of specific rotations of the resulting cuparenic acid and mevalonolactone with authentic standards and literature data. Six minor congeners (2-7) were isolated and identified, and their antimicrobial and cytotoxic effects are reported. Compounds 1-4 are the first natural products featuring an unmodified mevalonic acid residue as a building block.


Asunto(s)
Antibacterianos/aislamiento & purificación , Basidiomycota/química , Propionatos/aislamiento & purificación , Terpenos/aislamiento & purificación , Antibacterianos/química , Antibacterianos/farmacología , Ácido Mevalónico/análogos & derivados , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Resonancia Magnética Nuclear Biomolecular , Propionatos/química , Estereoisomerismo , Terpenos/química , Terpenos/farmacología , Tailandia
17.
Angew Chem Int Ed Engl ; 54(22): 6637-40, 2015 May 26.
Artículo en Inglés | MEDLINE | ID: mdl-25876559

RESUMEN

Feeding of (2,3,4,5,6-(13) C5 )mevalonolactone to the fungus Hypomyces odoratus resulted in a completely labeled sesquiterpene ether. The connectivity of the carbon atoms was easily deduced from a (13) C,(13) C COSY spectrum, revealing a structure that was different from the previously reported structure of hypodoratoxide, even though the reported (13) C NMR data matched. A structural revision of hypodoratoxide is thus presented. Its absolute configuration was tentatively assigned from its co-metabolite cis-dihydroagarofuran. Its biosynthesis was investigated by feeding of (3-(13) C)- and (4,6-(13) C2 )mevalonolactone, which gave insights into the complex rearrangement of the carbon skeleton during terpene cyclization by analysis of the (13) C,(13) C couplings.


Asunto(s)
Sesquiterpenos/metabolismo , Ascomicetos/metabolismo , Isótopos de Carbono/química , Espectroscopía de Resonancia Magnética , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/química , Ácido Mevalónico/metabolismo , Conformación Molecular , Sesquiterpenos/química
18.
Biochemistry ; 53(25): 4161-8, 2014 Jul 01.
Artículo en Inglés | MEDLINE | ID: mdl-24914732

RESUMEN

Isoprenoids make up a remarkably diverse class of more than 25000 biomolecules that include familiar compounds such as cholesterol, chlorophyll, vitamin A, ubiquinone, and natural rubber. The two essential building blocks of all isoprenoids, isopentenyl pyrophosphate (IPP) and dimethylallyl pyrophosphate (DMAPP), are ubiquitous in the three domains of life. In most eukaryotes and archaea, IPP and DMAPP are generated through the mevalonate pathway. We have identified two novel enzymes, mevalonate-3-kinase and mevalonate-3-phosphate-5-kinase from Thermoplasma acidophilum, which act sequentially in a putative alternate mevalonate pathway. We propose that a yet unidentified ATP-independent decarboxylase acts upon mevalonate 3,5-bisphosphate, yielding isopentenyl phosphate, which is subsequently phosphorylated by the known isopentenyl phosphate kinase from T. acidophilum to generate the universal isoprenoid precursor, IPP.


Asunto(s)
Ácido Mevalónico/análogos & derivados , Organofosfatos/metabolismo , Fosfotransferasas/metabolismo , Thermoplasma/metabolismo , Ácido Mevalónico/metabolismo , Fosforilación , Fosfotransferasas/genética
19.
Chembiochem ; 15(16): 2379-83, 2014 Nov 03.
Artículo en Inglés | MEDLINE | ID: mdl-25186118

RESUMEN

Six (13)C-labelled isotopomers of mevalonolactone were synthesised and used in feeding experiments with the endophytic fungus Geniculosporium. The high incorporation rates of (13)C-label into a sesquiterpene that was found in headspace extracts of the fungus enabled unambiguous identification of this volatile as pogostol without the need for compound purification, simply by collecting the volatile fraction with a closed-loop stripping apparatus followed by direct (13)C NMR analysis (CLSA-NMR). The feeding experiments also gave insights into the biosynthesis of pogostol, including stereochemical aspects of the terpene cyclisation reaction. The possible biological function of pogostol is discussed.


Asunto(s)
Hongos/metabolismo , Sesquiterpenos de Guayano/biosíntesis , Sesquiterpenos/metabolismo , Isótopos de Carbono/química , Ciclización , Cromatografía de Gases y Espectrometría de Masas , Marcaje Isotópico , Ácido Mevalónico/análogos & derivados , Ácido Mevalónico/química , Ácido Mevalónico/metabolismo , Sesquiterpenos/química , Sesquiterpenos de Guayano/química , Estereoisomerismo
20.
Chirality ; 26(9): 453-61, 2014 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-24431105

RESUMEN

Here we present for the first time the experimental and theoretical (DFT/B3LYP/6-311++G**) Raman optical activity (ROA) spectra of (-)-R-mevalonic acid as the δ-lactone form in neat liquid and in the aqueous solution. Quantum chemical calculations show the conformational diversity of (-)-R-mevalonolactone originated from small energy differences between the various conformation of the six-membered ring and the arrangement of the hydroxyl group. According to calculations, the investigated compound takes predominantly the chair conformation with the hydroxyl group in axial position, but the contribution of the other chair and boat conformers in the equilibrium at room temperature is not negligible. Additionally, we present normal Raman and the surface enhanced Raman (SERS) spectra of (-)-R-mevalonolactone adsorbed on the colloidal silver.


Asunto(s)
Ácido Mevalónico/análogos & derivados , Espectrometría Raman/métodos , Ácido Mevalónico/química , Conformación Molecular
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