Your browser doesn't support javascript.
loading
Mostrar: 20 | 50 | 100
Resultados 1 - 20 de 485
Filtrar
Más filtros

País/Región como asunto
Intervalo de año de publicación
1.
Anal Biochem ; 693: 115598, 2024 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-38964700

RESUMEN

The widespread use of polyamides such as nylons has led to the accumulation of nylon waste, which is particularly resistant to decomposition due to the intrinsic stability of the amide bond. New methods are required for the true recycling of these waste materials by depolymerization. Enzymes that are capable of hydrolyzing polyamides have been proposed as biocatalysts that may be suitable for this application. NylC is an enzyme that can mediate the hydrolysis of aminohexanoic acid oligomers, and to some extent, bulk polymers. However, current assays to characterize the activity of this enzyme require long reaction times and/or rely on secondary reactions to quantify hydrolysis. Herein, we have designed structurally-optimized small molecule chromogenic esters that serve as substrate analogues for monitoring NylC acyltransferase activity in a continuous manner. This assay can be performed in minutes at room temperature, and the substrate N-acetyl-GABA-pNP ester (kcat = 0.37 s-1, KM = 256 µM) shows selectivity for NylC in complex biological media. We also demonstrate that activity towards this substrate analogue correlates with amide hydrolysis, which is the primary activity of this enzyme. Furthermore, our screening of substrate analogues provides insight into the substrate specificity of NylC, which is relevant to biocatalytic applications.


Asunto(s)
Nylons , Nylons/química , Nylons/metabolismo , Hidrólisis , Especificidad por Sustrato , Hidrolasas/metabolismo , Hidrolasas/química , Aciltransferasas/metabolismo , Aciltransferasas/química , Aciltransferasas/análisis , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/química
2.
J Biol Chem ; 295(43): 14640-14652, 2020 10 23.
Artículo en Inglés | MEDLINE | ID: mdl-32817054

RESUMEN

The human zDHHC S-acyltransferase family comprises 23 enzymes that mediate the S-acylation of a multitude of cellular proteins, including channels, receptors, transporters, signaling molecules, scaffolds, and chaperones. This reversible post-transitional modification (PTM) involves the attachment of a fatty acyl chain, usually derived from palmitoyl-CoA, to specific cysteine residues on target proteins, which affects their stability, localization, and function. These outcomes are essential to control many processes, including synaptic transmission and plasticity, cell growth and differentiation, and infectivity of viruses and other pathogens. Given the physiological importance of S-acylation, it is unsurprising that perturbations in this process, including mutations in ZDHHC genes, have been linked to different neurological pathologies and cancers, and there is growing interest in zDHHC enzymes as novel drug targets. Although zDHHC enzymes control a diverse array of cellular processes and are associated with major disorders, our understanding of these enzymes is surprisingly incomplete, particularly with regard to the regulatory mechanisms controlling these enzymes. However, there is growing evidence highlighting the role of different PTMs in this process. In this review, we discuss how PTMs, including phosphorylation, S-acylation, and ubiquitination, affect the stability, localization, and function of zDHHC enzymes and speculate on possible effects of PTMs that have emerged from larger screening studies. Developing a better understanding of the regulatory effects of PTMs on zDHHC enzymes will provide new insight into the intracellular dynamics of S-acylation and may also highlight novel approaches to modulate S-acylation for clinical gain.


Asunto(s)
Aciltransferasas/metabolismo , Acilación , Aciltransferasas/análisis , Animales , Humanos , Lipoilación , Metilación , Fosforilación , Procesamiento Proteico-Postraduccional , Especificidad por Sustrato , Ubiquitinación
3.
Biotechnol Appl Biochem ; 68(6): 1486-1500, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-33150647

RESUMEN

In this study, four genes encoding secondary acyltransferases of lipid A in Vibrio parahaemolyticus ATCC33846 were identified. When the four genes were overexpressed in Escherichia coli MLK1067 that which produces the penta-acylated lipid A lacking the secondary acylation at the C3' position, a C12:0 secondary acyl chain was added at the C3' position of lipid A only in E. coli overexpressing VP_RS01045, but not VP_RS00880, VP_RS08405, or VP_RS12170. When the four genes were overexpressed in E. coli MKV15b that produces lipid IVA , a C12:0 secondary acyl chain was again added at the C3' position in E. coli overexpressing VP_RS01045, but a C14:0 secondary acyl chain was added at the C2' position of lipid A in E. coli overexpressing VP_RS00880, VP_RS08405, or VP_RS12170. The results indicate that four acyltransferases of lipid A are encoded by VP_RS01045, VP_RS00880, VP_RS08405, or VP_RS12170 in V. parahaemolyticus. The acyltransferase encoded by VP_RS01045 adds a C12:0 secondary acyl chain at the C3' position of lipid A, whereas the acyltransferase encoded by VP_RS00880, VP_RS08405, or VP_RS12170 adds a C14:0 secondary acyl chain at the C2' position of lipid A. This work contributes to understanding the biosynthetic pathway of lipid A in V. parahaemolyticus.


Asunto(s)
Aciltransferasas/análisis , Lípido A/biosíntesis , Vibrio parahaemolyticus/metabolismo , Aciltransferasas/metabolismo , Conformación de Carbohidratos , Lípido A/genética
4.
J Infect Dis ; 222(12): 2093-2102, 2020 11 13.
Artículo en Inglés | MEDLINE | ID: mdl-32060529

RESUMEN

BACKGROUND: Mycobacterium tuberculosis remains a global health problem and clinical management is complicated by difficulty in discriminating between latent infection and active disease. While M. tuberculosis-reactive antibody levels are heterogeneous, studies suggest that levels of IgG glycosylation differ between disease states. Here we extend this observation across antibody domains and M. tuberculosis specificities to define changes with the greatest resolving power. METHODS: Capillary electrophoretic glycan analysis was performed on bulk non-antigen-specific IgG, bulk Fc domain, bulk Fab domain, and purified protein derivative (PPD)- and Ag85A-specific IgG from subjects with latent (n = 10) and active (n = 20) tuberculosis. PPD-specific isotype/subclass, PPD-specific antibody-dependent phagocytosis, cellular cytotoxicity, and natural killer cell activation were assessed. Discriminatory potentials of antibody features were evaluated individually and by multivariate analysis. RESULTS: Parallel profiling of whole, Fc, and Fab domain-specific IgG glycosylation pointed to enhanced differential glycosylation on the Fc domain. Differential glycosylation was observed across antigen-specific antibody populations. Multivariate modeling highlighted Fc domain glycan species as the top discriminatory features, with combined PPD IgG titers and Fc domain glycans providing the highest classification accuracy. CONCLUSIONS: Differential glycosylation occurs preferentially on the Fc domain, providing significant discriminatory power between different states of M. tuberculosis infection and disease.


Asunto(s)
Fragmentos Fab de Inmunoglobulinas/química , Fragmentos Fc de Inmunoglobulinas/química , Tuberculosis Latente/diagnóstico , Tuberculosis/diagnóstico , Aciltransferasas/análisis , Adolescente , Adulto , Anciano , Antígenos Bacterianos/análisis , Proteínas Bacterianas/análisis , Electroforesis Capilar , Femenino , Glicosilación , Humanos , Inmunoglobulina G/análisis , Masculino , Persona de Mediana Edad , Mycobacterium tuberculosis , Polisacáridos/análisis , Tuberculina/análisis
5.
J Fish Dis ; 41(12): 1843-1857, 2018 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-30239011

RESUMEN

The aims of this study were to determine the prevalence and phylogenetic relationship of motile Aeromonas spp. that might be pathogenic species for rainbow trout in infected/mix infection cases (based upon different outbreaks on fish farms). A total of 99 motile Aeromonas isolates (and three reference strains) were analysed that were isolated from four different fish species in different sizes of fish (0.1-3,000 g), different months and water temperatures (6.1-21.2°C). The biochemical characteristics of the isolates were determined using conventional tests and a rapid test kit. Additionally, molecular identification was performed using the gyrB housekeeping gene region and with glycerophospholipid-cholesterol acyltransferase polymerase chain reaction (GCAT-PCR). The sequencing results obtained from the gyrB gene region were deposited in the GenBank database, and phylogenetic relationships were determined with the BioNumerics 7.6 database. Nearly half of the Aeromonas isolates that were isolated from rainbow trout showing signs of disease were determined to be possible infectious agents. Aeromonas species exhibit biochemical variability for many characters, so some Aeromonas species tested negative for GCAT-PCR despite that this test was created especially for Aeromonas identification. The phylogenetic tree based upon gyrB contained 10 different phylogroups that were based on 96% cut-off value in gyrB gene region.


Asunto(s)
Aeromonas/fisiología , Coinfección/veterinaria , Enfermedades de los Peces/epidemiología , Infecciones por Bacterias Gramnegativas/veterinaria , Oncorhynchus mykiss , Infecciones Oportunistas/veterinaria , Aciltransferasas/análisis , Aeromonas/clasificación , Aeromonas/genética , Animales , Proteínas Bacterianas/análisis , Coinfección/epidemiología , Coinfección/microbiología , Girasa de ADN/análisis , Enfermedades de los Peces/microbiología , Infecciones por Bacterias Gramnegativas/epidemiología , Infecciones por Bacterias Gramnegativas/microbiología , Infecciones Oportunistas/epidemiología , Infecciones Oportunistas/microbiología , Filogenia , Reacción en Cadena de la Polimerasa/veterinaria , Prevalencia , Turquía/epidemiología
6.
J Clin Microbiol ; 55(10): 3072-3088, 2017 10.
Artículo en Inglés | MEDLINE | ID: mdl-28794178

RESUMEN

Direct pathogen detection in blood to diagnose active tuberculosis (TB) has been difficult due to low levels of circulating antigens or due to the lack of specific, high-affinity binding reagents and reliable assays with adequate sensitivity. We sought to determine whether slow off-rate modified aptamer (SOMAmer) reagents with subnanomolar affinity for Mycobacterium tuberculosis proteins (antigens 85A, 85B, 85C, GroES, GroEL2, DnaK, CFP10, KAD, CFP2, RplL, and Tpx) could be useful to diagnose tuberculosis. When incorporated into the multiplexed, array-based proteomic SOMAscan assay, limits of detection reached the subpicomolar range in 40% serum. Binding to native M. tuberculosis proteins was confirmed by using M. tuberculosis culture filtrate proteins and fractions from infected macrophages and via affinity capture assays and subsequent mass spectrometry. Comparison of serum from culture-positive pulmonary TB patients and TB suspects systematically ruled out for TB revealed small but statistically significant (P < 0.0001) differences in the median M. tuberculosis signals and in specific pathogen markers, such as antigen 85B. Samples where many M. tuberculosis aptamers produced high signals were rare exceptions. In concentrated, protein-normalized urine from TB patients and non-TB controls, the CFP10 (EsxB) SOMAmer yielded the most significant differential signals (P < 0.0276), particularly in TB patients with HIV coinfection. In conclusion, direct M. tuberculosis antigen detection proved difficult even with a sensitive method such as SOMAscan, likely due to their very low, subpicomolar abundance. The observed differences between cases and controls had limited diagnostic utility in serum and urine, but further evaluation of M. tuberculosis SOMAmers using other platforms and sample types is warranted.


Asunto(s)
Aciltransferasas/análisis , Antígenos Bacterianos/análisis , Aptámeros de Péptidos/metabolismo , Proteínas Bacterianas/sangre , Proteínas Bacterianas/orina , Mycobacterium tuberculosis/inmunología , Tuberculosis Pulmonar/diagnóstico , Antígenos Bacterianos/inmunología , Proteínas Bacterianas/análisis , Humanos , Pruebas Inmunológicas/métodos , Unión Proteica/fisiología , Tuberculosis Pulmonar/microbiología
7.
Biochem Biophys Res Commun ; 475(3): 264-70, 2016 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-27184406

RESUMEN

BACKGROUND: MGAT3 catalyzes the synthesis of 1,2-diacylglycerol from 2-monoacylglycerol in an acyl CoA-dependent reaction. Although initially identified as an MGAT enzyme, MGAT3 is more closely related to DGAT2 than to MGAT1 and MGAT2. Furthermore, MGAT3 possesses both DGAT and MGAT activities, in vitro. MGAT3 is almost exclusively expressed in the small intestine in humans, suggesting that it has a role in dietary fat absorption. Although identified many years ago, little information is available regarding the contribution of MGAT3 to triacylglycerol biosynthesis. RESULTS: This study confirmed the initial observations that MGAT3 possessed both MGAT and DGAT activities. When expressed in cells in culture, MGAT3 stimulated lipid droplet growth, but unlike DGAT2, does not become concentrated around the lipid droplet surface. We also characterized the MGAT activity of an MGAT3 mutant in which a conserved cysteine was changed to a tyrosine residue. Lastly, although they share significant sequence identity, MGAT3 is a much more stable protein than DGAT2, yet they are both polyubiquitinated and degraded through ER-associated degradation by the proteasome. CONCLUSION: Our findings provide additional evidence that MGAT3 likely functions as a TG synthase in cells.


Asunto(s)
Acilcoenzima A/metabolismo , Aciltransferasas/metabolismo , Gotas Lipídicas/metabolismo , Triglicéridos/metabolismo , Aciltransferasas/análisis , Animales , Células COS , Chlorocebus aethiops , Diacilglicerol O-Acetiltransferasa/análisis , Diacilglicerol O-Acetiltransferasa/metabolismo , Células HEK293 , Humanos
8.
Analyst ; 141(20): 5767-5775, 2016 Oct 21.
Artículo en Inglés | MEDLINE | ID: mdl-27486595

RESUMEN

A silicon nitride Ion Sensitive Field Effect Transistor (ISFET) based immunosensor was developed as a low-cost and label-free electrical detection for the detection of antigen 85 complex B (Ag85B). The sensing membrane of the ISFET was modified with 3-aminopropyltriethoxysilane (APTES) followed by glutaraldehyde (GA), yielding an aldehyde-terminated surface. This group is available for immobilization of a monoclonal antibody against a recombinant Ag85B protein (anti-Ag85B antibody). The optimal concentration for anti-Ag85B antibody immobilization onto the modified ISFET was 100 µg ml-1. This optimal condition provided the maximal binding capability and minimal non-specific background signal. The binding event between the recombinant Ag85B antigen and anti-Ag85B antibody on the ISFET surface is presented by monitoring the gate potential change at a constant drain current. The dose response for the recombinant Ag85B protein showed a linear response between 0.12 and 1 µg ml-1 without significant interference from other recombinant proteins. The analytical imprecision (CV%) and accuracy of this Ag85B protein biosensor were 9.73-10.99% and 95.29%, respectively. In addition, an irrelevant antibody and other recombinant proteins were employed as a negative control to demonstrate the non-specific interaction of the antigen and antibody. The success of this immunosensor system for Ag85B protein detection facilitates the construction of a promising device which can shorten the turnaround time for the diagnosis of tuberculosis compared to a standard culture method. Furthermore, this device could also be applied for real-time growth monitoring of Mycobacterium tuberculosis in a mycobacterial culture system.


Asunto(s)
Aciltransferasas/análisis , Antígenos Bacterianos/análisis , Proteínas Bacterianas/análisis , Técnicas Biosensibles , Compuestos de Silicona , Tuberculosis/diagnóstico , Anticuerpos Inmovilizados , Anticuerpos Monoclonales , Glutaral , Iones , Mycobacterium tuberculosis/crecimiento & desarrollo , Propilaminas , Silanos
9.
Bioorg Chem ; 62: 64-73, 2015 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-26246082

RESUMEN

Ghrelin-O-Acyltransferase (GOAT) is an 11-transmembrane integral membrane protein that octanoylates the metabolism-regulating peptide hormone ghrelin at Ser3 and may represent an attractive target for the treatment of type II diabetes and the metabolic syndrome. Protein octanoylation is unique to ghrelin in humans, and little is known about the mechanism of GOAT or of related protein-O-acyltransferases HHAT or PORC. In this study, we explored an in vitro microsomal ghrelin octanoylation assay to analyze its enzymologic features. Measurement of Km for 10-mer, 27-mer, and synthetic Tat-peptide-containing ghrelin substrates provided evidence for a role of charge interactions in substrate binding. Ghrelin substrates with amino-alanine in place of Ser3 demonstrated that GOAT can catalyze the formation of an octanoyl-amide bond at a similar rate compared with the natural reaction. A pH-rate comparison of these substrates revealed minimal differences in acyltransferase activity across pH 6.0-9.0, providing evidence that these reactions may be relatively insensitive to the basicity of the substrate nucleophile. The conserved His338 residue was required both for Ser3 and amino-Ala3 ghrelin substrates, suggesting that His338 may have a key catalytic role beyond that of a general base.


Asunto(s)
Aciltransferasas/análisis , Biotina/análogos & derivados , Pruebas de Enzimas , Ghrelina/análogos & derivados , Aciltransferasas/farmacocinética , Secuencia de Aminoácidos , Animales , Baculoviridae/genética , Biotina/síntesis química , Biotina/metabolismo , Línea Celular , Vectores Genéticos/genética , Ghrelina/síntesis química , Ghrelina/metabolismo , Concentración de Iones de Hidrógeno , Proteínas de la Membrana , Ratones , Modelos Moleculares
10.
Cancer ; 120(10): 1520-31, 2014 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-24863391

RESUMEN

BACKGROUND: The functions of cytoskeleton-associated membrane protein 4 (CKAP4), one kind of type II transmembrane protein, are associated with the palmitoyl acyltransferase DHHC2. The objective of the current study was to investigate CKAP4/DHHC2 expression and its prognostic significance in patients with hepatocellular carcinoma (HCC). METHODS: Two independent cohorts of 416 patients with HCC were enrolled. All the patients included had defined clinicopathologic and follow-up data. Using real-time polymerase chain reaction and immunohistochemical assay, CKAP4 and DHHC2 expression were evaluated. The association between CKAP4/DHHC2 expression and HCC-specific disease-free survival and overall survival was analyzed by Kaplan-Meier curves, the log-rank test, and Multivariate Cox regression analyses. RESULTS: The data documented that CKAP4 expression was much higher in HCC tumor tissues compared with adjacent normal tissues and its expression was significantly correlated with tumor size, intrahepatic metastases, portal venous invasion, and Barcelona Clinic Liver Cancer stage of disease in 2 cohorts of patients. On survival analysis, patients with high CKAP4 expression appeared to have a favorable overall survival and a longer disease-free survival compared with those with low expression. DHHC2 expression was also examined in tissue microarray analysis by immunohistochemistry and the results demonstrated that 87.6% of the cases had low expression of DHHC2. Kaplan-Meier analysis indicated that a high level of DHHC2 expression predicted favorable overall survival and disease-free survival rates in both the training cohort and validation set. Furthermore, the combination of CKAP4 and DHHC2 was found to have a more powerful efficiency in prognosis prediction than either one alone. CONCLUSIONS: To the best of our knowledge, the current study is the first to demonstrate that the expression of CKAP4 and its palmitoyl acyltransferase DHHC2 correlates with disease progression and metastasis in patients with HCC and may provide prognostic and therapeutic value.


Asunto(s)
Aciltransferasas/análisis , Biomarcadores de Tumor/análisis , Carcinoma Hepatocelular/química , Carcinoma Hepatocelular/patología , Neoplasias Hepáticas/química , Neoplasias Hepáticas/patología , Proteínas de la Membrana/análisis , Proteínas Supresoras de Tumor/análisis , Adulto , Anciano , Biomarcadores de Tumor/sangre , Western Blotting , China , Estudios de Cohortes , Supervivencia sin Enfermedad , Femenino , Regulación Neoplásica de la Expresión Génica , Humanos , Inmunohistoquímica , Estimación de Kaplan-Meier , Masculino , Persona de Mediana Edad , Análisis Multivariante , Clasificación del Tumor , Invasividad Neoplásica , Estadificación de Neoplasias , Ácido Palmítico/metabolismo , Vena Porta/patología , Valor Predictivo de las Pruebas , Pronóstico , Modelos de Riesgos Proporcionales , Reacción en Cadena en Tiempo Real de la Polimerasa , Análisis de Matrices Tisulares
11.
BMC Biotechnol ; 14: 68, 2014 Jul 17.
Artículo en Inglés | MEDLINE | ID: mdl-25033887

RESUMEN

BACKGROUND: Tuberculosis is the leading cause of death due to bacterial infections worldwide, mainly caused by Mycobacterium tuberculosis. The antigen 85 complex comprises a set of major secreted proteins of M. tuberculosis, which are potential biomarkers for diagnostic. RESULTS: In this work, the first human single chain fragment variable (scFv) antibodies specific for the tuberculosis biomarker 85 B were selected by phage display from naïve antibody gene libraries (HAL7/8). Produced as scFv-Fc in mammalian cells, these antibodies were further characterized and analysed for specificity and applicability in different tuberculosis antigen detection assays. Sandwich detection of recombinant 85 B was successful in enzyme linked immunosorbent assay (ELISA), lateral flow immunoassay and immunoblot. Whereas detection of M. tuberculosis cell extracts and culture filtrates was only possible in direct ELISA and immunoblot assays. It was found that the conformation of 85 B, depending on sample treatment, influenced antigen detection. CONCLUSIONS: Recombinant antibodies, selected by phage display, may be applicable for 85 B detection in various assays. These antibodies are candidates for the development of future point of care tuberculosis diagnostic kits. Using 85 B as a biomarker, the antigen conformation influenced by sample treatment is important.


Asunto(s)
Aciltransferasas/inmunología , Antígenos Bacterianos/inmunología , Proteínas Bacterianas/inmunología , Mycobacterium tuberculosis/metabolismo , Anticuerpos de Cadena Única/metabolismo , Aciltransferasas/análisis , Aciltransferasas/química , Secuencia de Aminoácidos , Antígenos Bacterianos/análisis , Antígenos Bacterianos/química , Proteínas Bacterianas/análisis , Proteínas Bacterianas/química , Ensayo de Inmunoadsorción Enzimática , Mapeo Epitopo , Epítopos/química , Epítopos/inmunología , Epítopos/metabolismo , Biblioteca de Genes , Humanos , Biblioteca de Péptidos , Proteínas Recombinantes/biosíntesis , Proteínas Recombinantes/genética , Proteínas Recombinantes/inmunología , Anticuerpos de Cadena Única/genética , Anticuerpos de Cadena Única/inmunología
12.
Electrophoresis ; 35(11): 1685-92, 2014 Jun.
Artículo en Inglés | MEDLINE | ID: mdl-24590893

RESUMEN

Grapevine is a large source of healthy polyphenols for human diet, and red table-grapes and wines are the main source of stilbenes. These compounds are important both in the plant defence system and for human health. In the present study, Vitis vinifera cv. Barbera cell cultures were treated with 50 µg/mL chitosan and proteomic analyses on soluble and membrane subcellular fractions were performed against suitable controls. Three soluble stilbene synthase protein spots, four stilbene synthase spots in the microsomal fraction and four spots of membrane ATPase subunits were identified, the accumulation of which was modulated in response to chitosan treatment. Present proteomic and immunolocalisation data seem to provide evidence supporting the hypothesis that a stilbene biosynthetic multi-enzyme complex is associated with the intracellular membrane. In addition, proteomic analyses showed a general decrease in the accumulation of proteins belonging to different primary metabolism pathways, both in the soluble and membrane fractions. In particular, energy, sugar and amino acid metabolisms were down-regulated as a consequence of chitosan and acetic acid treatments. These metabolic modifications could lead to a consistent change in the profile and amount of metabolites stored in grape berries, with consequent effects on taste, flavour, organoleptic and nutraceutical properties of derived food products.


Asunto(s)
Quitosano/metabolismo , Proteínas de Plantas/análisis , Proteínas de Plantas/metabolismo , Proteómica , Vitis/citología , Vitis/metabolismo , Aciltransferasas/análisis , Aciltransferasas/metabolismo , Técnicas de Cultivo de Célula/métodos , Estilbenos/metabolismo , Fracciones Subcelulares/química , Fracciones Subcelulares/metabolismo
13.
Protein Expr Purif ; 100: 33-9, 2014 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-24810911

RESUMEN

Phosphatidylinositol mannosides are essential structural components of the mycobacterial cell envelope. They are implicated in host-pathogen interactions during infection and serve as a basis for biosynthesis of other unique molecules with immunomodulatory properties - mycobacterial lipopolysaccharides lipoarabinomannan and lipomannan. Acyltransferase Rv2611 is involved in one of the initial steps in the assembly of these molecules in Mycobacterium tuberculosis - the attachment of an acyl group to position-6 of the 2-linked mannosyl residue of the phosphatidylinositol mannoside anchor. Although the function of this enzyme was annotated 10 years ago, it has never been completely biochemically characterized due to lack of the pure protein. We have successfully overexpressed and purified MSMEG_2934, the ortholog of Rv2611c from the non-pathogenic model organism Mycobacteriumsmegmatis mc(2)155 using mycobacterial pJAM2 expression system, which allowed confirmation of its in vitro acyltransferase activity, and establishment of its substrate specificity.


Asunto(s)
Aciltransferasas/metabolismo , Infecciones por Mycobacterium no Tuberculosas/microbiología , Mycobacterium smegmatis/enzimología , Fosfatidilinositoles/metabolismo , Acilación , Aciltransferasas/análisis , Aciltransferasas/genética , Aciltransferasas/aislamiento & purificación , Secuencia de Aminoácidos , Pared Celular/química , Pared Celular/metabolismo , Cromatografía de Afinidad , Clonación Molecular , Escherichia coli/genética , Humanos , Datos de Secuencia Molecular , Mycobacterium smegmatis/química , Mycobacterium smegmatis/genética , Mycobacterium smegmatis/metabolismo , Mycobacterium tuberculosis/enzimología , Fosfatidilinositoles/química , Proteínas Recombinantes/análisis , Proteínas Recombinantes/genética , Proteínas Recombinantes/aislamiento & purificación , Proteínas Recombinantes/metabolismo
14.
J Lipid Res ; 54(8): 2282-2290, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23709689

RESUMEN

Click chemistry is evolving as a powerful tool in biological applications because it allows the sensitive and specific detection of compounds with alkyne or azido groups. Here we describe the use of alkyne lipids as substrates for in vitro enzymatic assays of lipid modifying enzymes. The small alkyne moiety is introduced synthetically at the terminus of the hydrocarbon chain of various substrate lipids. After the assay, the label is click-reacted with the azide-bearing fluorogenic dye 3-azido-7-hydroxycoumarin, followed by the separation of the lipid mix by thin-layer chromatography and fluorescence detection, resulting in high sensitivity and wide-range linearity. Kinetic analyses using alkyne-labeled substrates for lysophosphatidic acid acyltransferases, lysophosphatidylcholine acyltransferases, and ceramide synthases resulted in Michaelis-Menten constants similar to those for radiolabeled or natural substrates. We tested additional alkyne substrates for several hydrolases and acyltransferases in lipid metabolism. In this pilot study we establish alkyne lipids as a new class of convenient substrates for in vitro enzymatic assays.


Asunto(s)
1-Acilglicerofosfocolina O-Aciltransferasa/metabolismo , Aciltransferasas/metabolismo , Alquinos/metabolismo , Química Clic , Pruebas de Enzimas/métodos , Lípidos/química , Oxidorreductasas/metabolismo , 1-Acilglicerofosfocolina O-Aciltransferasa/análisis , Aciltransferasas/análisis , Alquinos/química , Animales , Células Cultivadas , Humanos , Cinética , Ratones , Ratones Endogámicos C57BL , Estructura Molecular , Oxidorreductasas/análisis , Oxidorreductasas/deficiencia , Especificidad por Sustrato
15.
J Am Chem Soc ; 135(19): 7082-5, 2013 May 15.
Artículo en Inglés | MEDLINE | ID: mdl-23631516

RESUMEN

Reversible S-palmitoylation is an important post-translational modification that regulates the trafficking, localization, and activity of proteins. Cysteine-rich Asp-His-His-Cys (DHHC) domain-containing enzymes are evolutionarily conserved protein palmitoyl acyltransferases (PATs). The human genome encodes 23 DHHC-PATs that regulate diverse cellular functions. Although chemical probes and proteomic methods to detect palmitoylated protein substrates have been reported, no probes for direct detection of the activity of PATs are available. Here we report the synthesis and characterization of 2-bromohexadec-15-ynoic acid and 2-bromooctadec-17-ynoic acid, which are analogues of 2-bromopalmitate (2-BP), as activity-based probes for PATs as well as other palmitoylating and 2-BP-binding enzymes. These probes will serve as new chemical tools for activity-based protein profiling to explore PATs, to dissect the functions of PATs in cell signaling and diseases, and to facilitate the identification of their inhibitors.


Asunto(s)
Aciltransferasas/análisis , Aciltransferasas/metabolismo , Palmitatos/química , Palmitatos/metabolismo , Animales , Pruebas de Enzimas , Células HEK293 , Humanos , Lipoilación , Ratones , Sondas Moleculares/síntesis química , Sondas Moleculares/química , Sondas Moleculares/metabolismo , Palmitatos/síntesis química
16.
Biotechnol Lett ; 35(1): 115-9, 2013 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-22955680

RESUMEN

Seventeen independent transgenic rice plants with the maize anthocyanin regulatory gene Lc under control of the CaMV 35S promoter were obtained and verified by molecular identification. Ten plants showed red spikelets during early development of florets, and the degenerate florets were still red after heading. Additionally, these plants exhibited intense pigmentation on the surface of the anther and the bottom of the ovary. They were unable to properly bloom and were completely sterile. Following pollination with normal pollen, these plants yielded red caryopses but did not mature normally. QRT-PCR analysis indicated that mRNA accumulation of the CHS-like gene encoding a chalcone synthase-related protein was increased significantly in the sterile plant. This is the first report to suggest that upregulation of the CHS gene expression may result in rice sterility and affect the normal development of rice seeds.


Asunto(s)
Antocianinas/genética , Regulación de la Expresión Génica de las Plantas , Oryza/genética , Infertilidad Vegetal/genética , Plantas Modificadas Genéticamente/genética , Zea mays/genética , Aciltransferasas/análisis , Aciltransferasas/genética , Aciltransferasas/metabolismo , Flores/química , Flores/genética , Flores/metabolismo , Hibridación Genética , Oryza/metabolismo , Fenotipo , Proteínas de Plantas/análisis , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Plantas Modificadas Genéticamente/metabolismo , Reacción en Cadena en Tiempo Real de la Polimerasa
17.
Microbiol Spectr ; 11(3): e0380322, 2023 06 15.
Artículo en Inglés | MEDLINE | ID: mdl-37222613

RESUMEN

Methods for efficient insoluble protein production require further exploration. PagP, an Escherichia coli outer membrane protein with high ß-sheet content, could function as an efficient fusion partner for inclusion body-targeted expression of recombinant peptides. The primary structure of a given polypeptide determines to a large extent its propensity to aggregate. Herein, aggregation "hot spots" (HSs) in PagP were analyzed using the web-based software AGGRESCAN, leading to identification of a C-terminal region harboring numerous HSs. Moreover, a proline-rich region was found in the ß-strands. Substitution of these prolines by residues with high ß-sheet propensity and hydrophobicity significantly improved its ability to form aggregates. Consequently, the absolute yields of recombinant antimicrobial peptides Magainin II, Metchnikowin, and Andropin were increased significantly when expressed in fusion with this refined version of PagP. We describe separation of recombinant target proteins expressed in inclusion bodies fused with the tag. An artificial NHT linker peptide with three motifs was implemented for separation and purification of authentic recombinant antimicrobial peptides. IMPORTANCE Fusion tag-induced formation of inclusion bodies provides a powerful means to express unstructured or toxic proteins. For a given fusion tag, how to enhance the formation of inclusion bodies remains to be explored. Our study illustrated that the aggregation HSs in a fusion tag played important roles in mediating its insoluble expression. Efficient production of inclusion bodies could also be implemented by refining its primary structure to form a more stable ß-sheet with higher hydrophobicity. This study provides a promising method for improvement of the insoluble expression of recombinant proteins.


Asunto(s)
Proteínas de Escherichia coli , Escherichia coli , Escherichia coli/metabolismo , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Péptidos/química , Cuerpos de Inclusión , Péptidos Antimicrobianos , Proteínas Recombinantes de Fusión/genética , Aciltransferasas/análisis , Aciltransferasas/química , Aciltransferasas/metabolismo , Proteínas de Escherichia coli/genética , Proteínas de Escherichia coli/metabolismo
18.
Anal Biochem ; 421(1): 342-4, 2012 Feb 01.
Artículo en Inglés | MEDLINE | ID: mdl-22051857

RESUMEN

N-myristoylation is the irreversible attachment of a C(14) fatty acid, myristic acid, to the N-terminal glycine of a protein via formation of an amide bond. This modification is catalyzed by myristoyl-coenzyme A (CoA):protein N-myristoyltransferase (NMT), an enzyme ubiquitous in eukaryotes that is up-regulated in several cancers. Here we report a sensitive fluorescence-based assay to study the enzymatic activity of human NMT1 and NMT2 based on detection of CoA by 7-diethylamino-3-(4-maleimido-phenyl)-4-methylcoumarin. We also describe expression and characterization of NMT1 and NMT2 and assay validation with small molecule inhibitors. This assay should be broadly applicable to NMTs from a range of organisms.


Asunto(s)
Aciltransferasas/análisis , Aciltransferasas/antagonistas & inhibidores , Aciltransferasas/genética , Aciltransferasas/metabolismo , Coenzima A , Cumarinas , Fluorescencia , Colorantes Fluorescentes , Humanos , Cinética , Ácidos Mirísticos/metabolismo , Procesamiento Proteico-Postraduccional
19.
J Ind Microbiol Biotechnol ; 39(4): 579-84, 2012 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-22042516

RESUMEN

Ketoacyl synthases are enzymes involved in fatty acid synthesis and can be classified into five families based on primary sequence similarity. Different families have different catalytic mechanisms. Developing cost-effective computational models to identify the family of ketoacyl synthases will be helpful for enzyme engineering and in knowing individual enzymes' catalytic mechanisms. In this work, a support vector machine-based method was developed to predict ketoacyl synthase family using the n-peptide composition of reduced amino acid alphabets. In jackknife cross-validation, the model based on the 2-peptide composition of a reduced amino acid alphabet of size 13 yielded the best overall accuracy of 96.44% with average accuracy of 93.36%, which is superior to other state-of-the-art methods. This result suggests that the information provided by n-peptide compositions of reduced amino acid alphabets provides efficient means for enzyme family classification and that the proposed model can be efficiently used for ketoacyl synthase family annotation.


Asunto(s)
Aciltransferasas/análisis , Modelos Químicos , Máquina de Vectores de Soporte , Aciltransferasas/química , Secuencia de Aminoácidos , Aminoácidos/análisis , Animales , Catálisis , Humanos , Datos de Secuencia Molecular , Péptidos/química
20.
Dev Biol ; 346(1): 1-10, 2010 Oct 01.
Artículo en Inglés | MEDLINE | ID: mdl-20599894

RESUMEN

Analysis of diverse signaling systems has revealed that one important level of control is regulation of membrane trafficking of ligands and receptors. The activities of some ligands are also regulated by whether they are membrane bound or secreted. In Drosophila, several morphogenetic signals that play critical roles in development have been found to be subject to such regulation. For example, activity of the Hedgehog (Hh) is regulated by Raspberry, which palmitoylates Hh. Similarly, the palmitoylases Porcupine and Raspberry increase the activities of Wingless (Wg) and the EGF-ligand Spitz (Spi), respectively. In contrast to its vertebrate homologues, which have typical N-terminal signal sequences, the precursor form of Drosophila Hh contains an internal type-II secretory signal motif. The Short Gastrulation (Sog) protein is another secreted Drosophila protein that contains a type-II signal and differs from its vertebrate ortholog Chordin which contains a standard signal peptide. In this study, we examine the regulation of Sog secretion and regulation by dHIP14, the ortholog of a mammalian palmitoylase first identified as Huntington Interacting Protein (HIP). We show that dHIP14 binds to Sog and that Sog is palmitoylated. In S2 cells, dHIP14 promotes secretion of Sog as well as stabilizing a membrane associated form of Sog. We examined the requirement for candidate cysteine residues in the N-terminal predicted cytoplasmic domain of Sog and find that Cys27, one of two adjacent cysteines (Cys27 and Cys28), is essential for the full activity of dHIP14 and its effect on Sog. Finally, we find that dHIP14 promotes the activity of Sog in vivo. These studies highlight the growing importance of lipid modification in regulating signaling at the level of ligand production and localization.


Asunto(s)
Aciltransferasas/fisiología , Proteínas Morfogenéticas Óseas/antagonistas & inhibidores , Proteínas de Drosophila/metabolismo , Proteínas de Drosophila/fisiología , Drosophila/embriología , Aciltransferasas/análisis , Aciltransferasas/química , Secuencia de Aminoácidos , Animales , Proteínas de Drosophila/análisis , Proteínas de Drosophila/química , Aparato de Golgi/química , Lipoilación , Datos de Secuencia Molecular , Factor de Crecimiento Transformador beta/fisiología
SELECCIÓN DE REFERENCIAS
DETALLE DE LA BÚSQUEDA