Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution.

Genetic perturbations of cortical development can lead to neurodevelopmental disease, including autism spectrum disorder (ASD). To identify genomic regions crucial to corticogenesis, we mapped the activity of gene-regulatory elements generating a single-cell atlas of gene expression and chromatin accessibility both independently and jointly. This revealed waves of gene regulation by key transcription factors (TFs) across a nearly continuous differentiation trajectory, distinguished the expression programs of glial lineages, and identified lineage-determining TFs that exhibited strong correlation between linked gene-regulatory elements and expression levels. These highly connected genes adopted an active chromatin state in early differentiating cells, consistent with lineage commitment. Base-pair-resolution neural network models identified strong cell-type-specific enrichment of noncoding mutations predicted to be disruptive in a cohort of ASD individuals and identified frequently disrupted TF binding sites. This approach illustrates how cell-type-specific mapping can provide insights into the programs governing human development and disease.

A Fine-Scale Functional Logic to Convergence from Retina to Thalamus.

Numerous well-defined classes of retinal ganglion cells innervate the thalamus to guide image-forming vision, yet the rules governing their convergence and divergence remain unknown. Using two-photon calcium imaging in awake mouse thalamus, we observed a functional arrangement of retinal ganglion cell axonal boutons in which coarse-scale retinotopic ordering gives way to fine-scale organization based on shared preferences for other visual features. Specifically, at the ∼6 µm scale, clusters of boutons from different axons often showed similar preferences for either one or multiple features, including axis and direction of motion, spatial frequency, and changes in luminance. Conversely, individual axons could "de-multiplex" information channels by participating in multiple, functionally distinct bouton clusters. Finally, ultrastructural analyses demonstrated that retinal axonal boutons in a local cluster often target the same dendritic domain. These data suggest that functionally specific convergence and divergence of retinal axons may impart diverse, robust, and often novel feature selectivity to visual thalamus.

The Fuzzy Logic of Network Connectivity in Mouse Visual Thalamus.

In an attempt to chart parallel sensory streams passing through the visual thalamus, we acquired a 100-trillion-voxel electron microscopy (EM) dataset and identified cohorts of retinal ganglion cell axons (RGCs) that innervated each of a diverse group of postsynaptic thalamocortical neurons (TCs). Tracing branches of these axons revealed the set of TCs innervated by each RGC cohort. Instead of finding separate sensory pathways, we found a single large network that could not be easily subdivided because individual RGCs innervated different kinds of TCs and different kinds of RGCs co-innervated individual TCs. We did find conspicuous network subdivisions organized on the basis of dendritic rather than neuronal properties. This work argues that, in the thalamus, neural circuits are not based on a canonical set of connections between intrinsically different neuronal types but, rather, may arise by experience-based mixing of different kinds of inputs onto individual postsynaptic cells.

Enabling conditions for an equitable and sustainable blue economy.

The future of the global ocean economy is currently envisioned as advancing towards a 'blue economy'-socially equitable, environmentally sustainable and economically viable ocean industries1,2. However, tensions exist within sustainable development approaches, arising from differing perspectives framed around natural capital or social equity. Here we show that there are stark differences in outlook on the capacity for establishing a blue economy, and on its potential outcomes, when social conditions and governance capacity-not just resource availability-are considered, and we highlight limits to establishing multiple overlapping industries. This is reflected by an analysis using a fuzzy logic model to integrate indicators from multiple disciplines and to evaluate their current capacity to contribute to establishing equitable, sustainable and viable ocean sectors consistent with a blue economy approach. We find that the key differences in the capacity of regions to achieve a blue economy are not due to available natural resources, but include factors such as national stability, corruption and infrastructure, which can be improved through targeted investments and cross-scale cooperation. Knowledge gaps can be addressed by integrating historical natural and social science information on the drivers and outcomes of resource use and management, thus identifying equitable pathways to establishing or transforming ocean sectors1,3,4. Our results suggest that policymakers must engage researchers and stakeholders to promote evidence-based, collaborative planning that ensures that sectors are chosen carefully, that local benefits are prioritized, and that the blue economy delivers on its social, environmental and economic goals.

Structured Sparse Regularized TSK Fuzzy System for predicting therapeutic peptides.

Therapeutic peptides act on the skeletal system, digestive system and blood system, have antibacterial properties and help relieve inflammation. In order to reduce the resource consumption of wet experiments for the identification of therapeutic peptides, many computational-based methods have been developed to solve the identification of therapeutic peptides. Due to the insufficiency of traditional machine learning methods in dealing with feature noise. We propose a novel therapeutic peptide identification method called Structured Sparse Regularized Takagi-Sugeno-Kang Fuzzy System on Within-Class Scatter (SSR-TSK-FS-WCS). Our method achieves good performance on multiple therapeutic peptides and UCI datasets.

Ten quick tips for fuzzy logic modeling of biomedical systems.

Fuzzy logic is useful tool to describe and represent biological or medical scenarios, where often states and outcomes are not only completely true or completely false, but rather partially true or partially false. Despite its usefulness and spread, fuzzy logic modeling might easily be done in the wrong way, especially by beginners and unexperienced researchers, who might overlook some important aspects or might make common mistakes. Malpractices and pitfalls, in turn, can lead to wrong or overoptimistic, inflated results, with negative consequences to the biomedical research community trying to comprehend a particular phenomenon, or even to patients suffering from the investigated disease. To avoid common mistakes, we present here a list of quick tips for fuzzy logic modeling any biomedical scenario: some guidelines which should be taken into account by any fuzzy logic practitioner, including experts. We believe our best practices can have a strong impact in the scientific community, allowing researchers who follow them to obtain better, more reliable results and outcomes in biomedical contexts.

Re-ordered fuzzy conformance checking for uncertain clinical records.

Modern hospitals implement clinical pathways to standardize patients' treatments. Conformance checking techniques provide an automated tool to assess whether the actual executions of clinical processes comply with the corresponding clinical pathways. However, clinical processes are typically characterized by a high degree of uncertainty, both in their execution and recording. This paper focuses on uncertainty related to logging clinical processes. The logging of the activities executed during a clinical process in the hospital information system is often performed manually by the involved actors (e.g., the nurses). However, such logging can occur at a different time than the actual execution time, which hampers the reliability of the diagnostics provided by conformance checking techniques. To address this issue, we propose a novel conformance checking algorithm that leverages principles of fuzzy set theory to incorporate experts' knowledge when generating conformance diagnostics. We exploit this knowledge to define a fuzzy tolerance in a time window, which is then used to assess the magnitude of timestamp violations of the recorded activities when evaluating the overall process execution compliance. Experiments conducted on a real-life case study in a Dutch hospital show that the proposed method obtains more accurate diagnostics than the state-of-the-art approaches. We also consider how our diagnostics can be used to stimulate discussion with domain experts on possible strategies to mitigate logging uncertainty in the clinical practice.

Different policies constrained agricultural non-point pollutants emission trading management for water system under interval, fuzzy, and stochastic information.

Formulating suitable policies is essential for resources and environmental management. In this study, an agricultural pollutants emission trading management model driven by water resources and pollutants control is developed to search reasonable policies for agricultural water resources allocation under multiple uncertainties. Random-fuzzy and interval information in water resources system that have directly impact on the effectiveness of management schemes is reflected through interval two-stage stochastic fuzzy-probability programming. The model was root from regional agricultural water resources system in Jining City, China under considering the relationship among effective precipitation, crop water demand, and pollutants emission. Two types policies (water consumption-control and pollutants emission-control) are designed for searching the related interaction on water resources management and water quality improvement. The results indicated that water resources policies would be of water and environmental double benefits, and a large rainfall would reduce irrigation amount from water sources and lead to a larger pollutants emission trading. The results will help for defining scientific and effective water resources protection and management policies and analyzing the related interacted effects on water consumption, pollutants control and system benefit.

An intelligent interval forecasting system based on fuzzy time series and error distribution characteristics for air quality index.

Due to the emergency environment pollution problems, it is imperative to understand the air quality and take effective measures for environmental governance. As a representative measure, the air quality index (AQI) is a single conceptual index value simplified by the concentrations of several routinely monitored air pollutants according to the proportion of various components in the air. With the gradual enhancement of awareness of environmental protection, air quality index forecasting is a key point of environment management. However, most of the traditional forecasting methods ignore the fuzziness of original data itself and the uncertainty of forecasting results which causes the unsatisfactory results. Thus, an innovative forecasting system combining data preprocessing technique, kernel fuzzy c-means (KFCM) clustering algorithm and fuzzy time series is successfully developed for air quality index forecasting. Concretely, the fuzzy time series that handle the fuzzy set is used for the main forecasting process. Then the complete ensemble empirical mode decomposition and KFCM are respectively developed for data denoising and interval partition. Furthermore, the interval forecasting method based on error distribution is developed to measure the forecasting uncertainty. Finally, the experimental simulation and evaluation system verify the great performance of proposed forecasting system and the promising applicability in a practical environment early warning system.

The effect of retirement on physical and mental health in China: a nonparametric fuzzy regression discontinuity study.

BACKGROUND: With the rapid aging of the domestic population, China has a strong incentive to increase the statutory retirement age. How retirement affects the health of the elderly is crucial to this policymaking. The health consequences of retirement have been debated greatly. This study aims to investigate the effects of retirement on physical and mental health among Chinese elderly people. METHODS: The data we use in this study comes from four waves (2011, 2013, 2015, and 2018) of the Harmonized China Health and Retirement Longitudinal Study (Harmonized CHARLS), a prospective cohort. We use the nonparametric fuzzy regression discontinuity design to estimate the effects of retirement on physical and mental health. We test the robustness of our results with respect to different bandwidths, kernel functions, and polynomial orders. We also explore the heterogeneity across gender and education. RESULTS: Results show that retirement has an insignificant effect on a series of physical and mental health outcomes, with and without adjusting several sociodemographic variables. Heterogeneity exists regarding gender and education. Although stratified analyses indicate that the transition from working to retirement leaves minimal effects on males and females, the effects go in the opposite direction. This finding holds for low-educated and high-educated groups for health outcomes including depression and cognitive function. Most of the results are stable with respect to different bandwidths, kernel functions, and polynomial orders. CONCLUSIONS: Our results suggest that it is possible to delay the statutory retirement age in China as retirement has insignificant effects on physical and mental health. However, further research is needed to assess the long-term effect of retirement on health.

The diversity bonus in pooling local knowledge about complex problems.

Recently, theoreticians have hypothesized that diverse groups, as opposed to groups that are homogeneous, may have relative merits [S. E. Page, The Diversity Bonus (2019)]-all of which lead to more success in solving complex problems. As such, understanding complex, intertwined environmental and social issues may benefit from the integration of diverse types of local expertise. However, efforts to support this hypothesis have been frequently made through laboratory-based or computational experiments, and it is unclear whether these discoveries generalize to real-world complexities. To bridge this divide, we combine an Internet-based knowledge elicitation technique with theoretical principles of collective intelligence to design an experiment with local stakeholders. Using a case of striped bass fisheries in Massachusetts, we pool the local knowledge of resource stakeholders represented by graphical cognitive maps to produce a causal model of complex social-ecological interdependencies associated with fisheries ecosystems. Blinded reviews from a scientific expert panel revealed that the models of diverse groups outranked those from homogeneous groups. Evaluation via stochastic network analysis also indicated that a diverse group more adequately modeled complex feedbacks and interdependencies than homogeneous groups. We then used our data to run Monte Carlo experiments wherein the distributions of stakeholder-driven cognitive maps were randomly reproduced and virtual groups were generated. Random experiments also predicted that knowledge diversity improves group success, which was measured by benchmarking group models against an ecosystem-based fishery management model. We also highlight that diversity must be moderated through a proper aggregation process, leading to more complex yet parsimonious models.

Risk assessment of infectious disease epidemic based on fuzzy Bayesian network.

The prevention and control of infectious disease epidemic (IDE) is an important task for every country and region. Risk assessment is significant for the prevention and control of IDE. Fuzzy Bayesian networks (FBN) can capture complex causality and uncertainty. The study developed a novel FBN model, integrating grounded theory, interpretive structural model, and expert weight determination algorithm for the risk assessment of IDE. The algorithm is proposed by the authors for expert weighting in fuzzy environment. The proposed FBN model comprehensively takes into account the risk factors and the interaction among them, and quantifies the uncertainty of IDE risk assessment, so as to make the assessment results more reliable. Taking the epidemic situation of COVID-19 in Wuhan as a case, the application of the proposed model is illustrated. And sensitivity analysis is performed to identify the important risk factors of IDE. Moreover, the effectiveness of the model is checked by the three-criterion-based quantitative validation method including variation connection, consistent effect, and cumulative limitation. Results show that the probability of the outbreak of COVID-19 in Wuhan is as high as 82.26%, which is well-matched with the actual situation. "Information transfer mechanism," "coordination and cooperation among various personnel," "population flow," and "ability of quarantine" are key risk factors. The constructed model meets the above three criteria. The application potential and effectiveness of the developed FBN model are demonstrated. The study provides decision support for preventing and controlling IDE.

Crossing-Point Estimation in Human-Robot Navigation-Statistical Linearization versus Sigma-Point Transformation.

Interactions between mobile robots and human operators in common areas require a high level of safety, especially in terms of trajectory planning, obstacle avoidance and mutual cooperation. In this connection, the crossings of planned trajectories and their uncertainty based on model fluctuations, system noise and sensor noise play an outstanding role. This paper discusses the calculation of the expected areas of interactions during human-robot navigation with respect to fuzzy and noisy information. The expected crossing points of the possible trajectories are nonlinearly associated with the positions and orientations of the robots and humans. The nonlinear transformation of a noisy system input, such as the directions of the motion of humans and robots, to a system output, the expected area of intersection of their trajectories, is performed by two methods: statistical linearization and the sigma-point transformation. For both approaches, fuzzy approximations are presented and the inverse problem is discussed where the input distribution parameters are computed from the given output distribution parameters.

An Optimized Stimulation Control System for Upper Limb Exoskeleton Robot-Assisted Rehabilitation Using a Fuzzy Logic-Based Pain Detection Approach.

The utilization of robotic systems in upper limb rehabilitation has shown promising results in aiding individuals with motor impairments. This research introduces an innovative approach to enhance the efficiency and adaptability of upper limb exoskeleton robot-assisted rehabilitation through the development of an optimized stimulation control system (OSCS). The proposed OSCS integrates a fuzzy logic-based pain detection approach designed to accurately assess and respond to the patient's pain threshold during rehabilitation sessions. By employing fuzzy logic algorithms, the system dynamically adjusts the stimulation levels and control parameters of the exoskeleton, ensuring personalized and optimized rehabilitation protocols. This research conducts comprehensive evaluations, including simulation studies and clinical trials, to validate the OSCS's efficacy in improving rehabilitation outcomes while prioritizing patient comfort and safety. The findings demonstrate the potential of the OSCS to revolutionize upper limb exoskeleton-assisted rehabilitation by offering a customizable and adaptive framework tailored to individual patient needs, thereby advancing the field of robotic-assisted rehabilitation.

An Automatic Lie Detection Model Using EEG Signals Based on the Combination of Type 2 Fuzzy Sets and Deep Graph Convolutional Networks.

In recent decades, many different governmental and nongovernmental organizations have used lie detection for various purposes, including ensuring the honesty of criminal confessions. As a result, this diagnosis is evaluated with a polygraph machine. However, the polygraph instrument has limitations and needs to be more reliable. This study introduces a new model for detecting lies using electroencephalogram (EEG) signals. An EEG database of 20 study participants was created to accomplish this goal. This study also used a six-layer graph convolutional network and type 2 fuzzy (TF-2) sets for feature selection/extraction and automatic classification. The classification results show that the proposed deep model effectively distinguishes between truths and lies. As a result, even in a noisy environment (SNR = 0 dB), the classification accuracy remains above 90%. The proposed strategy outperforms current research and algorithms. Its superior performance makes it suitable for a wide range of practical applications.

Evaluation of food waste treatment techniques using the complex q-rung orthopair fuzzy generalized TODIM method with weighted power geometric operator.

Food waste has received wide attention due to its hazardous environmental effects, such as soil, water, and air pollution. Evaluating food waste treatment techniques is imperative to realize environmental sustainability. This study proposes an integrated framework, the complex q-rung orthopair fuzzy-generalized TODIM (an acronym in Portuguese for interactive and multi-criteria decision-making) method with weighted power geometric operator, to assess the appropriate technique for food waste. The assessment of food waste treatment techniques can be divided into three phases: information processing, information fusion, and ranking alternatives. Firstly, the complex q-rung orthopair fuzzy set flexibly describes the information with periodic characteristics in the processing process with various parameters q. Then, the weighted power geometric operator is employed to calculate the weight of the expert and form the group evaluation matrix, in which the weight of each input rating depends upon the other input ratings. It can simulate the mutual support, multiplicative preferences, and interrelationship of experts. Next, the generalized TODIM method is employed to rank the food waste treatment techniques, considering experts' psychological characteristics and bounded behavior. Subsequently, a real-world application case examines the practicability of the proposed framework. Furthermore, the sensitivity analysis verifies the validity and stability of the presented framework. The comparative study highlights the effectiveness of this framework using the existing frameworks. According to the result, Anaerobic digestion (0.0043) has the highest priority among the considered alternatives, while Incineration (-0.0009) has the lowest.

Intelligent algorithms-aided modeling and optimization of the deturbidization of abattoir wastewater by electrocoagulation using aluminium electrodes.

The removal of turbidity from abattoir wastewater (AWW) by electrocoagulation (EC) was modeled and optimized using Artificial Intelligence (AI) algorithms. Artificial neural networks (ANN), adaptive neuro-fuzzy inference systems (ANFIS), particle swarm optimization (PSO), and genetic algorithms (GA) were the AI tools employed. Five input variables were considered: pH, current intensity, electrolysis time, settling time, and temperature. The ANN model was evaluated using the Levenberg-Marquardt (trainlm) algorithm, while the ANFIS modeling was accomplished using the Sugeno-type FIS. The ANN and ANFIS models demonstrated linear adequacy with the experimental data, with an R2 value of 0.9993 in both cases. The corresponding statistical error indices were RMSE (ANN = 5.65685E-05; ANFIS = 2.82843E-05), SSE (ANN = 1.60E-07; ANFIS = 3.4E-08), and MSE (ANN = 3.2E-09; ANFIS = 8E-10). The error indices revealed that the ANFIS model had the least performance error and is considered the most reliable of the two. The process optimization performed with GA and PSO considered turbidity removal efficiency, energy requirement, and electrode material loss. An optimal turbidity removal efficiency of 99.39 % was predicted at pH (3.1), current intensity (2 A), electrolysis time (20 min), settling time (50 min), and operating temperature (50 °C). This represents a potential for the delivery of cleaner water without the use of chemicals. The estimated power consumption and the theoretical mass of the aluminium electrode dissolved at the optimum condition were 293.33 kW h/m3 and 0.2237 g, respectively. The work successfully affirmed the effectiveness of the EC process in the removal of finely divided suspended particles from AWW and demonstrated the suitability of the AI algorithms in the modeling and optimization of the process.

Investigating the effects of surface water recharge on groundwater quality using hydrochemistry and ANFIS model: A case study Minia Governorate, Egypt.

Monitoring and assessing groundwater quality and quantity lays the basis for sustainable management. Therefore, this research aims to investigate various factors that affect groundwater quality, emphasizing its distance to the primary source of recharge, the Nile River. To this end, two separate study areas have been considered, including the West and West-West of Minia, Egypt, located around 30 and 80 km from the Nile River. The chosen areas rely on the same aquifer as groundwater source (Eocene aquifer). Groundwater quality has been assessed in the two studied regions to investigate the difference in quality parameters due to the river's distance. The power of machine learning to associate different variables and generate beneficial relationships has been utilized to mitigate the cost consumed in chemical analysis and alleviate the calculation complexity. Two adaptive neuro-fuzzy inference system (ANFIS) models were developed to predict the water quality index (WQI) and the irrigation water quality index (IWQI) using EC and the distance to the river. The findings of the assessment of groundwater quality revealed that the groundwater in the west of Minia exhibits suitability for agricultural utilization and partially meets the criteria for potable drinking water. Conversely, the findings strongly recommend the implementation of treatment processes for groundwater sourced from the West-West of Minia before its usage for various purposes. These outcomes underscore the significant influence of surface water recharge on the overall quality of groundwater. Also, the results revealed the uncertainty of using sodium adsorption ratio (SAR), Sodium Percentage (Na%), and Permeability Index (PI) techniques in assessing groundwater for irrigation and recommended using IWQI. The developed ANFIS models depicted perfect accuracy during the training and validation stages, reporting a coefficient of correlation (R) equal to 0.97 and 0.99 in the case of WQI and 0.96 and 0.98 in the case of IWQI. The research findings could incentivize decision-makers to monitor, manage, and sustain groundwater.

Predictive modeling of copper (II) adsorption from aqueous solutions by sawdust: a comparative analysis of adaptive neuro-fuzzy interference system (ANFIS) and artificial neural network (ANN) approaches.

Heavy metal ions are considered to be the most prevalent and toxic water contaminants. The objective of thois work was to investigate the effectiveness of employing the adsorption technique in a laboratory-size reactor to remove copper (II) ions from an aqueous medium. An adaptive neuro-fuzzy inference system (ANFIS) and a feed-forward artificial neural network (ANN) were used in this study. Four operational factors were chosen to examine their influence on the adsorption study: pH, contact duration, initial Cu (II) ions concentration, and adsorbent dosage. Using sawdust from wood, prediction models of copper (II) ions adsorption were optimized, created, and developed using the ANN and ANFIS models for tests. The result indicates that the determination coefficient for copper (II) metal ions in the training dataset was 0.987. Additionally, the ANFIS model's R2 value for both pollutants was 0.992. The findings demonstrate that the models presented a promising predictive approach that can be applied to successfully and accurately anticipate the simultaneous elimination of copper (II) and dye from the aqueous solution.

Exploring the Potential of Artificial Intelligence as a Facilitating Tool for Formulation Development in Fluidized Bed Processor: a Comprehensive Review.

This in-depth study looks into how artificial intelligence (AI) could be used to make formulation development easier in fluidized bed processes (FBP). FBP is complex and involves numerous variables, making optimization challenging. Various AI techniques have addressed this challenge, including machine learning, neural networks, genetic algorithms, and fuzzy logic. By integrating AI with experimental design, process modeling, and optimization strategies, intelligent systems for FBP can be developed. The advantages of AI in this context include improved process understanding, reduced time and cost, enhanced product quality, and robust formulation optimization. However, data availability, model interpretability, and regulatory compliance challenges must be addressed. Case studies demonstrate successful applications of AI in decision-making, process outcome prediction, and scale-up. AI can improve efficiency, quality, and cost-effectiveness in significant ways. Still, it is important to think carefully about data quality, how easy it is to understand, and how to follow the rules. Future research should focus on fully harnessing the potential of AI to advance formulation development in FBP.