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1.
J Am Chem Soc ; 142(19): 8790-8799, 2020 05 13.
Artículo en Inglés | MEDLINE | ID: mdl-32286828

RESUMEN

The combination of distinct peptide ligation techniques to facilitate chemical protein synthesis represents one of the long-standing goals in the field. A new combination ligation method of N-to-C sequential native chemical ligation and Ser/Thr ligation (NCL-STL) is described for the first time. This method relies on the peptide salicylaldehyde S,S-propanedithioacetal (SALPDT)-ester prepared by a new 1,3-propanedithiol-mediated reaction. The peptide SALPDT-ester, which is compatible with NCL, can be fully activated by N-chlorosuccinimide (NCS)/AgNO3 in aqueous solution to afford peptide SAL-ester for use in the subsequent STL. The practicality of the combined NCL-STL method is illustrated by the synthesis of S-palmitoylated matrix-2 (S-palm M2) ion channel from Influenza A virus and S-palmitoylated interferon-induced transmembrane protein 3 (S-palm IFITM3). This approach expands the multiple-segments peptide ligation toolkit for producing important and complex custom-made protein samples by chemical protein synthesis.


Asunto(s)
Aldehídos/química , Ésteres/química , Proteínas de la Membrana/síntesis química , Propano/química , Proteínas de Unión al ARN/síntesis química , Serina/química , Compuestos de Sulfhidrilo/química , Treonina/química , Proteínas de la Matriz Viral/síntesis química , Humanos , Proteínas de la Membrana/química , Estructura Molecular , Proteínas de Unión al ARN/química , Proteínas de la Matriz Viral/química
2.
Biochemistry ; 58(6): 633-645, 2019 02 12.
Artículo en Inglés | MEDLINE | ID: mdl-30565458

RESUMEN

Transmembrane helices dominate the landscape for many membrane proteins. Often flanked by interfacial aromatic residues, these transmembrane helices also contain loops and interhelix segments, which could help in stabilizing a transmembrane orientation. Using 2H nuclear magnetic resonance spectroscopy to monitor bilayer-incorporated model GWALP23 family peptides, we address systematically the issue of helix fraying in relation to the dynamics and orientation of highly similar individual transmembrane helices. We inserted aromatic (Phe, Trp, Tyr, and His) or non-aromatic residues (Ala and Gly) into positions 4 and 5 adjacent to a core transmembrane helix to examine the side-chain dependency of the transmembrane orientation, dynamics, and helix integrity (extent and location of unraveling). Incorporation of [2H]alanine labels enables one to assess the helicity of the core sequence and the peptide termini. For most of the helices, we observed substantial unwinding involving at least three residues at both ends. For the unique case of histidine at positions 4 and 5, an extended N-terminal unwinding was observed up to residue 7. For further investigation of the onset of fraying, we employed A4,5GWALP23 with 2H labels at residues 4 and 5 and found that the number of terminal residues involved in the unwinding depends on bilayer thicknesses and helps to govern the helix dynamics. The combined results enable us to compare and contrast the extent of fraying for each related helix, as reflected by the deviation of experimental 2H quadrupolar splitting magnitudes of juxta-terminal alanines A3 and A21 from those represented by an ideal helix geometry.


Asunto(s)
Membrana Dobles de Lípidos/química , Proteínas de la Membrana/química , Péptidos/química , Agua/química , Alanina/química , Secuencia de Aminoácidos , Dimiristoilfosfatidilcolina/química , Glicina/química , Enlace de Hidrógeno , Proteínas de la Membrana/síntesis química , Péptidos/síntesis química , Fosfatidilcolinas/química , Conformación Proteica en Hélice alfa , Desplegamiento Proteico
3.
Proc Natl Acad Sci U S A ; 113(3): 608-13, 2016 Jan 19.
Artículo en Inglés | MEDLINE | ID: mdl-26721399

RESUMEN

Single-span membrane proteins (ssMPs) represent approximately one-half of all membrane proteins and play important roles in cellular communications. However, like all membrane proteins, ssMPs are prone to misfolding and aggregation because of the hydrophobicity of transmembrane helices, making them difficult to study using common aqueous solution-based approaches. Detergents and membrane mimetics can solubilize membrane proteins but do not always result in proper folding and functionality. Here, we use cell-free protein synthesis in the presence of oil drops to create a one-pot system for the synthesis, assembly, and display of functional ssMPs. Our studies suggest that oil drops prevent aggregation of some in vitro-synthesized ssMPs by allowing these ssMPs to localize on oil surfaces. We speculate that oil drops may provide a hydrophobic interior for cotranslational insertion of the transmembrane helices and a fluidic surface for proper assembly and display of the ectodomains. These functionalized oil drop surfaces could mimic cell surfaces and allow ssMPs to interact with cell surface receptors under an environment closest to cell-cell communication. Using this approach, we showed that apoptosis-inducing human transmembrane proteins, FasL and TRAIL, synthesized and displayed on oil drops induce apoptosis of cultured tumor cells. In addition, we take advantage of hydrophobic interactions of transmembrane helices to manipulate the assembly of ssMPs and create artificial clusters on oil drop surfaces. Thus, by coupling protein synthesis with self-assembly at the water-oil interface, we create a platform that can use recombinant ssMPs to communicate with cells.


Asunto(s)
Bioquímica/métodos , Proteínas de la Membrana/síntesis química , Aceites/química , Agua/química , Apoptosis , Electroforesis en Gel de Poliacrilamida , Proteína Ligando Fas/metabolismo , Fluorescencia , Proteínas Fluorescentes Verdes/metabolismo , Humanos , Células Jurkat , Ligando Inductor de Apoptosis Relacionado con TNF/síntesis química
4.
Acc Chem Res ; 50(5): 1143-1153, 2017 05 16.
Artículo en Inglés | MEDLINE | ID: mdl-28374993

RESUMEN

Chemical synthesis can produce water-soluble globular proteins bearing specifically designed modifications. These synthetic molecules have been used to study the biological functions of proteins and to improve the pharmacological properties of protein drugs. However, the above advances notwithstanding, membrane proteins (MPs), which comprise 20-30% of all proteins in the proteomes of most eukaryotic cells, remain elusive with regard to chemical synthesis. This difficulty stems from the strong hydrophobic character of MPs, which can cause considerable handling issues during ligation, purification, and characterization steps. Considerable efforts have been made to improve the solubility of transmembrane peptides for chemical ligation. These methods can be classified into two main categories: the manipulation of external factors and chemical modification of the peptide. This Account summarizes our research advances in the development of chemical modification especially the two generations of removable backbone modification (RBM) strategy for the chemical synthesis of MPs. In the first RBM generation, we install a removable modification group at the backbone amide of Gly within the transmembrane peptides. In the second RBM generation, the RBM group can be installed into all primary amino acid residues. The second RBM strategy combines the activated intramolecular O-to-N acyl transfer reaction, in which a phenyl group remains unprotected during the coupling process, which can play a catalytic role to generate the activated phenyl ester to assist in the formation of amide. The key feature of the RBM group is its switchable stability in trifluoroacetic acid. The stability of these backbone amide N-modifications toward TFA can be modified by regulating the electronic effects of phenol groups. The free phenol group is acylated to survive the TFA deprotection step, while the acyl phenyl ester will be quantitatively hydrolyzed in a neutral aqueous solution, and the free phenol group increases the electron density of the benzene ring to make the RBM labile to TFA. The transmembrane peptide segment bearing RBM groups behaves like a water-soluble peptide during fluorenylmethyloxycarbonyl based solid-phase peptide synthesis (Fmoc SPPS), ligation, purification, and characterization. The quantitative removal of the RBM group can be performed to obtain full-length MPs. The RBM strategy was used to prepare the core transmembrane domain Kir5.1[64-179] not readily accessible by recombinant protein expression, the influenza A virus M2 proton channel with phosphorylation, the cation-specific ion channel p7 from the hepatitis C virus with site-specific NMR isotope labels, and so on. The RBM method enables the practical engineering of small- to medium-sized MPs or membrane protein domains to address fundamental questions in the biochemical, biophysical, and pharmaceutical sciences.


Asunto(s)
Proteínas de la Membrana/síntesis química , Técnicas de Síntesis en Fase Sólida/métodos , Antiportadores/síntesis química , Antiportadores/química , Detergentes/química , Proteínas de Escherichia coli/síntesis química , Proteínas de Escherichia coli/química , Interacciones Hidrofóbicas e Hidrofílicas , Membrana Dobles de Lípidos/química , Espectroscopía de Resonancia Magnética , Proteínas de la Membrana/química , Isótopos de Nitrógeno , Canales de Potasio de Rectificación Interna/síntesis química , Canales de Potasio de Rectificación Interna/química , Replegamiento Proteico , Solubilidad , Solventes/química , Proteínas de la Matriz Viral/síntesis química , Proteínas de la Matriz Viral/química , Proteínas Virales/síntesis química , Proteínas Virales/química , Canal Kir5.1
5.
Bioorg Med Chem ; 26(9): 2401-2409, 2018 05 15.
Artículo en Inglés | MEDLINE | ID: mdl-29650461

RESUMEN

Mycobacterium tuberculosis is considered one of the most successful pathogens in the history of mankind, having caused 1.7 million deaths in 2016. The amount of resistant and extensively resistant strains has increased; BCG has been the only vaccine to be produced in more than 100 years though it is still unable to prevent the disease's most disseminated form in adults; pulmonary tuberculosis. The search is thus still on-going for candidate antigens for an antituberculosis vaccine. This paper reports the use of a logical and rational methodology for finding such antigens, this time as peptides derived from the Rv3587c membrane protein. Bioinformatics tools were used for predicting mycobacterial surface location and Rv3587c protein structure whilst circular dichroism was used for determining its peptides' secondary structure. Receptor-ligand assays identified 4 high activity binding peptides (HABPs) binding specifically to A549 alveolar epithelial cells and U937 monocyte-derived macrophages, covering the region between amino acids 116 and 193. Their capability for inhibiting Mtb H37Rv invasion was evaluated. The recognition of antibodies from individuals suffering active and latent tuberculosis and from healthy individuals was observed in HABPs capable of avoiding mycobacterial entry to host cells. The results showed that 8 HABPs inhibited such invasion, two of them being common for both cell lines: 39265 (155VLAAYVYSLDNKRLWSNLDT173) and 39266 (174APSNETLVKTFSPGEQVTTY192). Peptide 39265 was the least recognised by antibodies from the individuals' sera evaluated in each group. According to the model proposed by FIDIC regarding synthetic vaccine development, peptide 39265 has become a candidate antigen for an antituberculosis vaccine.


Asunto(s)
Antígenos Bacterianos/inmunología , Proteínas Bacterianas/inmunología , Proteínas de la Membrana/inmunología , Mycobacterium tuberculosis/fisiología , Fragmentos de Péptidos/inmunología , Vacunas contra la Tuberculosis/inmunología , Secuencia de Aminoácidos , Antígenos Bacterianos/metabolismo , Antígenos Bacterianos/toxicidad , Proteínas Bacterianas/síntesis química , Proteínas Bacterianas/metabolismo , Proteínas Bacterianas/toxicidad , Línea Celular Tumoral , Biología Computacional , Diseño de Fármacos , Interacciones Huésped-Patógeno/efectos de los fármacos , Interacciones Huésped-Patógeno/fisiología , Humanos , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/metabolismo , Proteínas de la Membrana/toxicidad , Fragmentos de Péptidos/síntesis química , Fragmentos de Péptidos/metabolismo , Fragmentos de Péptidos/toxicidad , Estructura Secundaria de Proteína , Estructura Terciaria de Proteína , Receptores de Superficie Celular/metabolismo , Vacunas contra la Tuberculosis/síntesis química , Vacunas contra la Tuberculosis/metabolismo , Vacunas contra la Tuberculosis/toxicidad , Vacunas Sintéticas/inmunología , Vacunas Sintéticas/metabolismo , Vacunas Sintéticas/toxicidad
6.
J Biol Chem ; 291(6): 2874-87, 2016 Feb 05.
Artículo en Inglés | MEDLINE | ID: mdl-26620556

RESUMEN

Serpins regulate coagulation and inflammation, binding serine proteases in suicide-inhibitory complexes. Target proteases cleave the serpin reactive center loop scissile P1-P1' bond, resulting in serpin-protease suicide-inhibitory complexes. This inhibition requires a near full-length serpin sequence. Myxomavirus Serp-1 inhibits thrombolytic and thrombotic proteases, whereas mammalian neuroserpin (NSP) inhibits only thrombolytic proteases. Both serpins markedly reduce arterial inflammation and plaque in rodent models after single dose infusion. In contrast, Serp-1 but not NSP improves survival in a lethal murine gammaherpesvirus68 (MHV68) infection in interferon γ-receptor-deficient mice (IFNγR(-/-)). Serp-1 has also been successfully tested in a Phase 2a clinical trial. We postulated that proteolytic cleavage of the reactive center loop produces active peptide derivatives with expanded function. Eight peptides encompassing predicted protease cleavage sites for Serp-1 and NSP were synthesized and tested for inhibitory function in vitro and in vivo. In engrafted aorta, selected peptides containing Arg or Arg-Asn, not Arg-Met, with a 0 or +1 charge, significantly reduced plaque. Conversely, S-6 a hydrophobic peptide of NSP, lacking Arg or Arg-Asn with -4 charge, induced early thrombosis and mortality. S-1 and S-6 also significantly reduced CD11b(+) monocyte counts in mouse splenocytes. S-1 peptide had increased efficacy in plasminogen activator inhibitor-1 serpin-deficient transplants. Plaque reduction correlated with mononuclear cell activation. In a separate study, Serp-1 peptide S-7 improved survival in the MHV68 vasculitis model, whereas an inverse S-7 peptide was inactive. Reactive center peptides derived from Serp-1 and NSP with suitable charge and hydrophobicity have the potential to extend immunomodulatory functions of serpins.


Asunto(s)
Coagulación Sanguínea/efectos de los fármacos , Infecciones por Herpesviridae/inmunología , Factores Inmunológicos , Proteínas de la Membrana , Péptidos , Rhadinovirus/inmunología , Vasculitis/inmunología , Animales , Coagulación Sanguínea/inmunología , Modelos Animales de Enfermedad , Infecciones por Herpesviridae/tratamiento farmacológico , Humanos , Factores Inmunológicos/síntesis química , Factores Inmunológicos/química , Factores Inmunológicos/inmunología , Células Jurkat , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/química , Proteínas de la Membrana/farmacología , Ratones , Ratones Noqueados , Péptidos/síntesis química , Péptidos/química , Péptidos/farmacología , Vasculitis/tratamiento farmacológico
7.
Angew Chem Int Ed Engl ; 56(41): 12639-12643, 2017 10 02.
Artículo en Inglés | MEDLINE | ID: mdl-28834009

RESUMEN

Interferon-induced transmembrane protein 3 (IFITM3) is an antiviral transmembrane protein that is thought to serve as the primary factor for inhibiting the replication of a large number of viruses, including West Nile virus, Dengue virus, Ebola virus, and Zika virus. Production of this 14.5 kDa, 133-residue transmembrane protein, especially with essential posttranslational modifications, by recombinant expression is challenging. In this report, we document the chemical synthesis of IFTIM3 in multi-milligram quantities (>15 mg) and the preparation of phosphorylated and fluorescent variants. The synthesis was accomplished by using KAHA ligations, which operate under acidic aqueous/organic mixtures that excel at solubilizing even the exceptionally hydrophobic C-terminal region of IFITM3. The synthetic material is readily incorporated into model vesicles and forms the basis for using synthetic, homogenous IFITM3 and its derivatives for further studying its structure and biological mode of action.


Asunto(s)
Proteínas de la Membrana/síntesis química , Proteínas de Unión al ARN/síntesis química , Secuencia de Aminoácidos , Técnicas de Química Sintética/métodos , Colorantes Fluorescentes/síntesis química , Colorantes Fluorescentes/química , Humanos , Interacciones Hidrofóbicas e Hidrofílicas , Proteínas de la Membrana/química , Modelos Moleculares , Fosforilación , Proteínas de Unión al ARN/química
8.
J Am Chem Soc ; 138(10): 3579-86, 2016 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-26942690

RESUMEN

Energetic insights emerging from the structural characterization of peptide cross-ß assemblies have enabled the design and construction of robust asymmetric bilayer peptide membranes. Two peptides differing only in their N-terminal residue, phosphotyrosine vs lysine, coassemble as stacks of antiparallel ß-sheets with precisely patterned charged lattices stabilizing the bilayer leaflet interface. Either homogeneous or mixed leaflet composition is possible, and both create nanotubes with dense negative external and positive internal solvent exposed surfaces. Cross-seeding peptide solutions with a preassembled peptide nanotube seed leads to domains of different leaflet architecture within single nanotubes. Architectural control over these cross-ß assemblies, both across the bilayer membrane and along the nanotube length, provides access to highly ordered asymmetric membranes for the further construction of functional mesoscale assemblies.


Asunto(s)
Proteínas de la Membrana/química , Nanotubos de Péptidos/química , Péptidos/química , Proteínas de la Membrana/síntesis química , Péptidos/síntesis química , Dominios Proteicos
9.
J Am Chem Soc ; 138(10): 3553-61, 2016 Mar 16.
Artículo en Inglés | MEDLINE | ID: mdl-26943264

RESUMEN

Chemical protein synthesis can provide access to proteins with post-translational modifications or site-specific labelings. Although this technology is finding increasing applications in the studies of water-soluble globular proteins, chemical synthesis of membrane proteins remains elusive. In this report, a general and robust removable backbone modification (RBM) method is developed for the chemical synthesis of membrane proteins. This method uses an activated O-to-N acyl transfer auxiliary to install in the Fmoc solid-phase peptide synthesis process a RBM group with switchable reactivity toward trifluoroacetic acid. The method can be applied to versatile membrane proteins because the RBM group can be placed at any primary amino acid. With RBM, the membrane proteins and their segments behave almost as if they were water-soluble peptides and can be easily handled in the process of ligation, purification, and mass characterizations. After the full-length protein is assembled, the RBM group can be readily removed by trifluoroacetic acid. The efficiency and usefulness of the new method has been demonstrated by the successful synthesis of a two-transmembrane-domain protein (HCV p7 ion channel) with site-specific isotopic labeling and a four-transmembrane-domain protein (multidrug resistance transporter EmrE). This method enables practical synthesis of small- to medium-sized membrane proteins or membrane protein domains for biochemical and biophysical studies.


Asunto(s)
Proteínas de la Membrana/síntesis química , Técnicas de Síntesis en Fase Sólida/métodos , Proteínas de la Membrana/química , Modelos Moleculares , Péptidos/química
10.
Nat Methods ; 10(8): 759-61, 2013 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-23817067

RESUMEN

We designed ß-strand peptides that stabilize integral membrane proteins (IMPs). ß-strand peptides self-assemble in solution as filaments and become restructured upon association with IMPs; resulting IMP-ß-strand peptide complexes resisted aggregation when diluted in detergent-free buffer and were visible as stable, single particles with low detergent background in electron micrographs. ß-strand peptides enabled clear visualization of flexible conformations in the highly dynamic ATP-binding cassette (ABC) transporter MsbA.


Asunto(s)
Proteínas de la Membrana/química , Nanoestructuras/química , Péptidos/química , Péptidos/síntesis química , Transportadoras de Casetes de Unión a ATP/química , Proteínas Bacterianas/química , Dicroismo Circular , Proteínas de la Membrana/síntesis química , Microscopía Electrónica de Transmisión , Estructura Secundaria de Proteína , Espectroscopía Infrarroja por Transformada de Fourier
11.
Biochim Biophys Acta ; 1838(5): 1382-8, 2014 May.
Artículo en Inglés | MEDLINE | ID: mdl-24370776

RESUMEN

Incorporation of proteins in biomimetic giant unilamellar vesicles (GUVs) is one of the hallmarks towards cell models in which we strive to obtain a better mechanistic understanding of the manifold cellular processes. The reconstruction of transmembrane proteins, like receptors or channels, into GUVs is a special challenge. This procedure is essential to make these proteins accessible to further functional investigation. Here we describe a strategy combining two approaches: cell-free eukaryotic protein expression for protein integration and GUV formation to prepare biomimetic cell models. The cell-free protein expression system in this study is based on insect lysates, which provide endoplasmic reticulum derived vesicles named microsomes. It enables signal-induced translocation and posttranslational modification of de novo synthesized membrane proteins. Combining these microsomes with synthetic lipids within the electroswelling process allowed for the rapid generation of giant proteo-liposomes of up to 50 µm in diameter. We incorporated various fluorescent protein-labeled membrane proteins into GUVs (the prenylated membrane anchor CAAX, the heparin-binding epithelial growth factor like factor Hb-EGF, the endothelin receptor ETB, the chemokine receptor CXCR4) and thus presented insect microsomes as functional modules for proteo-GUV formation. Single-molecule fluorescence microscopy was applied to detect and further characterize the proteins in the GUV membrane. To extend the options in the tailoring cell models toolbox, we synthesized two different membrane proteins sequentially in the same microsome. Additionally, we introduced biotinylated lipids to specifically immobilize proteo-GUVs on streptavidin-coated surfaces. We envision this achievement as an important first step toward systematic protein studies on technical surfaces.


Asunto(s)
Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/metabolismo , Microsomas/metabolismo , Liposomas Unilamelares/metabolismo , Animales , Materiales Biomiméticos/síntesis química , Materiales Biomiméticos/metabolismo , Biomimética/métodos , Sistema Libre de Células , Insectos , Lípidos/química , Liposomas/metabolismo , Membranas/metabolismo , Microsomas/química , Modelos Biológicos , Liposomas Unilamelares/química
12.
J Pept Sci ; 21(7): 540-9, 2015 Jul.
Artículo en Inglés | MEDLINE | ID: mdl-25449562

RESUMEN

Chemical synthesis or semi-synthesis of membrane proteins can provide unique molecular tools, such as site-specific isotope labeling or post-translationally modified membrane proteins to gain insight into their biophysical and functional characteristics. However, during preparation, purification, and ligation of transmembrane peptides, tremendous challenges are encountered owing to their hydrophobic nature. This review focuses on the recent advances in chemical synthesis strategies of membrane proteins. These strategies help to solubilize the hydrophobic transmembrane peptide sequences under standard purification and chemical ligation conditions to improve their handling properties. Biophysical and functional studies of synthetic membrane proteins are reviewed as well.


Asunto(s)
Proteínas de la Membrana/síntesis química , Péptidos/síntesis química , Peptidomiméticos/síntesis química , Procesamiento Proteico-Postraduccional , Secuencia de Aminoácidos , Animales , Detergentes/química , Ésteres , Humanos , Enlace de Hidrógeno , Interacciones Hidrofóbicas e Hidrofílicas , Marcaje Isotópico , Datos de Secuencia Molecular , Solubilidad , Solventes/química
13.
Biochemistry ; 53(22): 3637-45, 2014 Jun 10.
Artículo en Inglés | MEDLINE | ID: mdl-24829070

RESUMEN

Aromatic amino acids often flank the transmembrane alpha helices of integral membrane proteins. By favoring locations within the membrane-water interface of the lipid bilayer, aromatic residues Trp, Tyr, and sometimes Phe may serve as anchors to help stabilize a transmembrane orientation. In this work, we compare the influence of interfacial Trp, Tyr, or Phe residues upon the properties of tilted helical transmembrane peptides. For such comparisons, it has been critical to start with no more than one interfacial aromatic residue near each end of a transmembrane helix, for example, that of GWALP23 (acetyl-GGALW(5)(LA)6LW(19)LAGA-[ethanol]amide). To this end, we have employed (2)H-labeled alanines and solid-state NMR spectroscopy to investigate the consequences of moving or replacing W5 or W19 in GWALP23 with selected Tyr, Phe, or Trp residues at the same or proximate locations. We find that GWALP23 peptides having F5, Y5, or W5 exhibit essentially the same average tilt and similar dynamics in bilayer membranes of 1,2-dilauroylphosphatidylcholine (DLPC) or 1,2-dioleoylphosphatidylcholine (DOPC). When double Tyr anchors are present, in Y(4,5)GWALP23 the NMR observables are markedly more subject to dynamic averaging and at the same time are less responsive to the bilayer thickness. Decreased dynamics are nevertheless observed when ring hydrogen bonding is removed, such that F(4,5)GWALP23 exhibits a similar extent of low dynamic averaging as GWALP23 itself. When F5 is the sole aromatic group in the N-interfacial region, the dynamic averaging is (only) slightly more extensive than with W5, Y5, or Y4 alone or with F4,5, yet it is much less than that observed for Y(4,5)GWALP23. Interestingly, moving Y5 to Y4 or W19 to W18, while retaining only one hydrogen-bond-capable aromatic ring at each interface, maintains the low level of dynamic averaging but alters the helix azimuthal rotation. The rotation change is about 40° for Y4 regardless of whether the host lipid bilayer is DLPC or DOPC. The rotational change (Δρ) is more dramatic and more complex when W19 is moved to W18, as Δρ is about +90° in DLPC but about -60° in DOPC. Possible reasons for this curious lipid-dependent helix rotation could include not only the separation distances between flanking aromatic or hydrophobic residues but also the absolute location of the W19 indole ring. For the more usual cases, when the helix azimuthal rotation shows little dependence on the host bilayer identity, excepting W(18)GWALP23, the transmembrane helices adapt to different lipids primarily by changing the magnitude of their tilt. We conclude that, in the absence of other functional groups, interfacial aromatic residues determine the preferred orientations and dynamics of membrane-spanning peptides. The results furthermore suggest possibilities for rotational and dynamic control of membrane protein function.


Asunto(s)
Simulación de Dinámica Molecular , Fragmentos de Péptidos/síntesis química , Péptidos/síntesis química , Fenilalanina/síntesis química , Triptófano/síntesis química , Tirosina/química , Espectrometría de Masas , Proteínas de la Membrana/síntesis química , Tirosina/metabolismo
14.
J Am Chem Soc ; 136(9): 3695-704, 2014 Mar 05.
Artículo en Inglés | MEDLINE | ID: mdl-24559202

RESUMEN

Total chemical synthesis provides a unique approach for the access to uncontaminated, monodisperse, and more importantly, post-translationally modified membrane proteins. In the present study we report a practical procedure for expedient and cost-effective synthesis of small to medium-sized membrane proteins in multimilligram scale through the use of automated Fmoc chemistry. The key finding of our study is that after the attachment of a removable arginine-tagged backbone modification group, the membrane protein segments behave almost the same as ordinary water-soluble peptides in terms of Fmoc solid-phase synthesis, ligation, purification, and mass spectrometry characterization. The efficiency and practicality of the new method is demonstrated by the successful preparation of Ser64-phosphorylated M2 proton channel from influenza A virus and the membrane-embedded domain of an inward rectifier K(+) channel protein Kir5.1. Functional characterizations of these chemically synthesized membrane proteins indicate that they provide useful and otherwise-difficult-to-access materials for biochemistry and biophysics studies.


Asunto(s)
Fluorenos/química , Proteínas de la Membrana/síntesis química , Técnicas de Síntesis en Fase Sólida/métodos , Secuencia de Aminoácidos , Cinética , Proteínas de la Membrana/química , Datos de Secuencia Molecular , Fosforilación , Canales de Potasio de Rectificación Interna/síntesis química , Canales de Potasio de Rectificación Interna/química , Estructura Terciaria de Proteína , Ácido Trifluoroacético/química , Proteínas de la Matriz Viral/síntesis química , Proteínas de la Matriz Viral/química , Canal Kir5.1
15.
J Pept Sci ; 20(2): 137-44, 2014 Feb.
Artículo en Inglés | MEDLINE | ID: mdl-24395811

RESUMEN

Negative phototaxis in Archaea is mediated by the sensory rhodopsin II/transducer complex (NpSRII/NpHtrII). After light excitation, the signal is relayed from the receptor to NpHtrII where a rotary motion of TM2 in the membrane domain (NpHtrII1-114) is induced. This conformational change is transferred to the downstream two-component signaling cascade. Here, we describe the chemical synthesis of this membrane domain, which consists of the two transmembrane helices TM1 and TM2. NpHtrII1-114 was synthesized using two sequential ligation steps. The first ligation between NpHtrII47-59 and NpHtrII60-114 was performed in organic solvents, whereas the final ligation was successful in an aqueous buffer that contained a detergent and a denaturant. The product was refolded into micelles and showed functional properties as determined by binding studies to its cognate receptor NpSRII and by photocycle experiments. This work demonstrates that membrane proteins can be successfully synthesized by chemical means paving the way for tailor-made modifications.


Asunto(s)
Técnicas de Química Sintética , Proteínas de la Membrana/síntesis química , Rodopsinas Sensoriales/síntesis química , Secuencia de Aminoácidos , Cromatografía Líquida de Alta Presión , Dicroismo Circular , Proteínas de la Membrana/química , Modelos Moleculares , Datos de Secuencia Molecular , Pliegue de Proteína , Rodopsinas Sensoriales/química
16.
Biochemistry ; 52(43): 7542-50, 2013 Oct 29.
Artículo en Inglés | MEDLINE | ID: mdl-24083359

RESUMEN

FtsB and FtsL are two essential integral membrane proteins of the bacterial division complex or "divisome", both characterized by a single transmembrane helix and a juxtamembrane coiled coil domain. The two domains are important for the association of FtsB and FtsL, a key event for their recruitment to the divisome, which in turn allows the recruitment of the late divisomal components to the Z-ring and subsequent completion of the division process. Here we present a biophysical analysis performed in vitro that shows that the transmembrane domains of FtsB and FtsL associate strongly in isolation. Using Förster resonance energy transfer, we have measured the oligomerization of fluorophore-labeled transmembrane domains of FtsB and FtsL in both detergent and lipid. The data indicate that the transmembrane helices are likely a major contributor to the stability of the FtsB-FtsL complex. Our analyses show that FtsB and FtsL form a 1:1 higher-order oligomeric complex, possibly a tetramer. This finding suggests that the FtsB-FtsL complex is capable of multivalent binding to FtsQ and other divisome components, a hypothesis that is consistent with the possibility that the FtsB-FtsL complex has a structural role in the stabilization of the Z-ring.


Asunto(s)
Proteínas de Ciclo Celular/metabolismo , Membrana Celular/metabolismo , Proteínas de Escherichia coli/metabolismo , Proteínas de la Membrana/metabolismo , Modelos Biológicos , Fragmentos de Péptidos/metabolismo , Proteínas de Ciclo Celular/síntesis química , Proteínas de Ciclo Celular/química , División Celular , Membrana Celular/química , Detergentes/química , Escherichia coli/crecimiento & desarrollo , Escherichia coli/metabolismo , Proteínas de Escherichia coli/síntesis química , Proteínas de Escherichia coli/química , Transferencia Resonante de Energía de Fluorescencia , Colorantes Fluorescentes/química , Cinética , Membrana Dobles de Lípidos/química , Membrana Dobles de Lípidos/metabolismo , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/química , Fragmentos de Péptidos/síntesis química , Fragmentos de Péptidos/química , Fosfatidilcolinas/química , Fosfatidilcolinas/metabolismo , Fosforilcolina/análogos & derivados , Fosforilcolina/química , Fosforilcolina/metabolismo , Dominios y Motivos de Interacción de Proteínas , Multimerización de Proteína , Estabilidad Proteica , Estructura Secundaria de Proteína
17.
Hepatology ; 56(2): 507-15, 2012 Aug.
Artículo en Inglés | MEDLINE | ID: mdl-22378192

RESUMEN

UNLABELLED: Hepatitis C virus (HCV) entry is a complicated process that requires multiple host factors, such as CD81, scavenger receptor BI, claudin-1 (CLDN1), and occludin. The interaction of virus and cellular entry factors represents a promising target for novel anti-HCV drug development. In this study, we sought to identify peptide inhibitors for HCV entry by screening a library of overlapping peptides covering the four above-mentioned entry factors. An 18-amino acid peptide (designated as CL58) that was derived from the CLDN1 intracellular and first transmembrane region inhibited both de novo and established HCV infection in vitro. Unlike previously reported peptides corresponding to CLDN1 extracellular loops, CL58 did not alter the normal distribution of CLDN1 and was not cytotoxic in vitro at concentrations nearly 100-fold higher than the effective antiviral dose. The inhibitory effect of CL58 appeared to occur at a late step during viral entry, presumably after initial binding. Finally, overexpressed CL58 was able to interact with HCV envelope proteins. CONCLUSION: We identified a novel CLDN1-derived peptide that inhibits HCV entry at a postbinding step. The findings expand our knowledge of the roles that CLDN1 play in HCV entry and highlight the potential for developing a new class of inhibitors targeting the viral entry process.


Asunto(s)
Antivirales/farmacología , Hepacivirus/efectos de los fármacos , Hepatitis C/prevención & control , Proteínas de la Membrana/farmacología , Péptidos/farmacología , Internalización del Virus/efectos de los fármacos , Secuencia de Aminoácidos , Antivirales/síntesis química , Antivirales/metabolismo , Línea Celular Tumoral , Claudina-1 , Diseño de Fármacos , Glicoproteínas/metabolismo , Hepacivirus/crecimiento & desarrollo , Hepacivirus/metabolismo , Hepatitis C/metabolismo , Hepatitis C/virología , Humanos , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/metabolismo , Datos de Secuencia Molecular , Péptidos/síntesis química , Péptidos/metabolismo , Uniones Estrechas/efectos de los fármacos , Uniones Estrechas/metabolismo , Uniones Estrechas/virología , Proteínas Virales/metabolismo
18.
Biochemistry ; 50(47): 10215-22, 2011 Nov 29.
Artículo en Inglés | MEDLINE | ID: mdl-22029270

RESUMEN

Drug molecules are typically hydrophobic and small in order to traverse membranes to reach cytoplasmic targets, but we have discovered that more polar molecules can be delivered across membranes using water-soluble, moderately hydrophobic membrane peptides of the pHLIP (pH low insertion peptide) family. Delivery of polar cargo molecules could expand the chemical landscape for pharmacological agents that have useful activity but are too polar by normal drug criteria. The spontaneous insertion and folding of the pHLIP peptide across a lipid bilayer seeks a free energy minimum, and insertion is accompanied by a release of energy that can be used to translocate cell-impermeable cargo molecules. In this study, we report our first attempt to tune the hydrophobicity of a polar cargo, phallacidin, in a systematic manner. We present the design, synthesis, and characterization of three phallacidin cargoes, where the hydrophobicity of the cargo was tuned by the attachment of diamines of various lengths of hydrophobic chains. The phallacidin cargoes were conjugated to pHLIP and shown to selectively inhibit the proliferation of cancer cells in a concentration-dependent manner at low pH.


Asunto(s)
Antineoplásicos/química , Antineoplásicos/metabolismo , Citoplasma/metabolismo , Sistemas de Liberación de Medicamentos , Proteínas de la Membrana/metabolismo , Péptidos Cíclicos/química , Péptidos Cíclicos/metabolismo , Antineoplásicos/síntesis química , Antineoplásicos/farmacología , Transporte Biológico , Línea Celular Tumoral , Membrana Celular/metabolismo , Proliferación Celular/efectos de los fármacos , Humanos , Concentración de Iones de Hidrógeno , Interacciones Hidrofóbicas e Hidrofílicas , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/química , Estructura Molecular , Péptidos Cíclicos/síntesis química , Péptidos Cíclicos/farmacología
19.
J Biomol NMR ; 46(1): 33-43, 2010 Jan.
Artículo en Inglés | MEDLINE | ID: mdl-19680602

RESUMEN

Membrane proteins are highly underrepresented in the structural data-base and remain one of the most challenging targets for functional and structural elucidation. Their roles in transport and cellular communication, furthermore, often make over-expression toxic to their host, and their hydrophobicity and structural complexity make isolation and reconstitution a complicated task, especially in cases where proteins are targeted to inclusion bodies. The development of cell-free expression systems provides a very interesting alternative to cell-based systems, since it circumvents many problems such as toxicity or necessity for the transportation of the synthesized protein to the membrane, and constitutes the only system that allows for direct production of membrane proteins in membrane-mimetic environments which may be suitable for liquid state NMR measurements. The unique advantages of the cell-free expression system, including strong expression yields as well as the direct incorporation of almost any combination of amino acids with very little metabolic scrambling, has allowed for the development of a wide-array of isotope labelling techniques which facilitate structural investigations of proteins whose spectral congestion and broad line-widths may have earlier rendered them beyond the scope of NMR. Here we explore various labelling strategies in conjunction with cell-free developments, with a particular focus on alpha-helical transmembrane proteins which benefit most from such methods.


Asunto(s)
Sistema Libre de Células/química , Marcaje Isotópico/métodos , Proteínas de la Membrana/química , Sistema Libre de Células/metabolismo , Proteínas de la Membrana/síntesis química , Proteínas de la Membrana/metabolismo , Resonancia Magnética Nuclear Biomolecular/métodos , Conformación Proteica
20.
J Struct Biol ; 168(1): 177-82, 2009 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-19332127

RESUMEN

Tethered lipid bilayers, containing a transmembrane synthetic ligand-gated ion channel (SLIC), have been formed on gold surfaces. The SLIC was designed as a highly selective receptor and reporter protein to detect antibodies in whole blood, which are of importance in malaria diagnosis. The specific binding of the antibody to the sensor surface was monitored on-line with label-free surface-sensitive techniques either optically by surface plasmon resonance in whole blood or electrically by measuring the channel activity of SLIC in blood serum. We demonstrate the feasibility of a highly sensitive and easily applicable whole blood biosensor on the basis of simple commercially available components. The sensor might find applications in the field of infectious diseases such as point-of-care diagnostics of malaria, high content quality control of blood samples of donors, or monitoring the efficacy of vaccination.


Asunto(s)
Técnicas Biosensibles/métodos , Canales Iónicos/sangre , Membrana Dobles de Lípidos/química , Malaria/diagnóstico , Proteínas de la Membrana/química , Humanos , Proteínas de la Membrana/síntesis química , Resonancia por Plasmón de Superficie
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