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1.
J Biol Chem ; 300(3): 105774, 2024 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-38382672

RESUMEN

Gum arabic (GA) is widely used as an emulsion stabilizer and edible coating and consists of a complex carbohydrate moiety with a rhamnosyl-glucuronate group capping the non-reducing ends. Enzymes that can specifically cleave the glycosidic chains of GA and modify their properties are valuable for structural analysis and industrial application. Cryogenic X-ray crystal structure of GA-specific L-rhamnose-α-1,4-D-glucuronate lyase from Fusarium oxysporum (FoRham1), belonging to the polysaccharide lyase (PL) family 42, has been previously reported. To determine the specific reaction mechanism based on its hydrogen-containing enzyme structure, we performed joint X-ray/neutron crystallography of FoRham1. Large crystals were grown in the presence of L-rhamnose (a reaction product), and neutron and X-ray diffraction datasets were collected at room temperature at 1.80 and 1.25 Å resolutions, respectively. The active site contained L-rhamnose and acetate, the latter being a partial analog of glucuronate. Incomplete H/D exchange between Arg166 and acetate suggested that a strong salt-bridge interaction was maintained. Doubly deuterated His105 and deuterated Tyr150 supported the interaction between Arg166 and the acetate. The unique hydrogen-rich environment functions as a charge neutralizer for glucuronate and stabilizes the oxyanion intermediate. The NE2 atom of His85 was deprotonated and formed a hydrogen bond with the deuterated O1 hydroxy of L-rhamnose, indicating the function of His85 as the base/acid catalyst for bond cleavage via ß-elimination. Asp83 functions as a pivot between the two catalytic histidine residues by bridging them. This His-His-Asp structural motif is conserved in the PL 24, 25, and 42 families.


Asunto(s)
Fusarium , Polisacárido Liasas , Humanos , Acetatos , Cristalografía por Rayos X , Ácido Glucurónico/química , Hidrógeno , Liasas , Polisacárido Liasas/química , Ramnosa/química , Fusarium/enzimología
2.
Molecules ; 29(9)2024 May 02.
Artículo en Inglés | MEDLINE | ID: mdl-38731598

RESUMEN

Obtaining high-added value compounds from agricultural waste receives increasing attention, as it can both improve resource utilization efficiency and reduce waste generation. In this study, polysaccharides are extracted from the discarded roots of Abelmoschus manihot (L.) by the high-efficiency ultrasound-assisted extraction (UAE). The optimized condition was determined as solid-liquid ratio SL ratio = 1:20, temperature T = 30 °C and time T = 40 min, achieving an extraction yield of 13.41%. Composition analysis revealed that glucose (Glc, 44.65%), rhamnose (Rha, 26.30%), galacturonic acid (GalA, 12.50%) and galactose (Gal, 9.86%) are the major monosaccharides of the extract. The extract showed a low degree of esterification (DE) value of 40.95%, and its Fourier-transform infrared (FT-IR) spectrum exhibited several characteristic peaks of polysaccharides. Inspired by the wide cosmetic applications of polysaccharides, the skincare effect of the extract was evaluated via the moisture retention, total phenolic content (TPC) quantification, 2,2-Diphenyl-1-picrylhydrazyl (DPPH)-free radical scavenging activity, anti-hyaluronidase and anti-elastase activity experiments. The extract solutions demonstrated a 48 h moisture retention rate of 10.75%, which is superior to that of commercially available moisturizer hyaluronic acid (HA). Moreover, both the TPC value of 16.16 mg GAE/g (dw) and DPPH-free radical scavenging activity of 89.20% at the concentration of 2 mg/mL indicated the strong anti-oxidant properties of the extract. Furthermore, the anti-hyaluronidase activity and moderate anti-elastase activity were determined as 72.16% and 42.02%, respectively. In general, in vitro skincare effect experiments suggest moisturizing, anti-oxidant, anti-radical and anti-aging activities of the A. manihot root extract, indicating its potential applications in the cosmetic industry.


Asunto(s)
Abelmoschus , Antioxidantes , Extractos Vegetales , Raíces de Plantas , Polisacáridos , Polisacáridos/química , Polisacáridos/farmacología , Polisacáridos/aislamiento & purificación , Extractos Vegetales/química , Extractos Vegetales/farmacología , Raíces de Plantas/química , Abelmoschus/química , Antioxidantes/química , Antioxidantes/farmacología , Espectroscopía Infrarroja por Transformada de Fourier , Cuidados de la Piel/métodos , Ramnosa/química , Galactosa , Ácidos Hexurónicos/química , Fenoles/química , Fenoles/análisis , Fenoles/farmacología , Humanos
3.
Molecules ; 29(12)2024 Jun 08.
Artículo en Inglés | MEDLINE | ID: mdl-38930808

RESUMEN

In this study, a beverage made from a combination of Agave sap (AS) and prickly pear juice (PPJ) was analyzed for its nutrients and bioactive and potentially health-promoting compounds. The beverage was evaluated for its ability to act as an antioxidant, regulate glycemic properties, and undergo gut bacterial fermentation in vitro. The major mono- and oligosaccharides present in the beverage were galacturonic acid (217.74 ± 13.46 mg/100 mL), rhamnose (227.00 ± 1.58 mg/100 mL), and fructose (158.16 ± 8.86 mg/mL). The main phenolic compounds identified were protocatechuic acid (440.31 ± 3.06 mg/100 mL) and catechin (359.72 ± 7.56 mg/100 mL). It was observed that the beverage had a low glycemic index (<40) and could inhibit digestive carbohydrases. The combination of ingredients also helped to reduce gas production during AS fermentation from 56.77 cm3 to 15.67 cm3. The major SCFAs produced during fermentation were butyrate, acetate, and propionate, with valerate being produced only during the late fermentation of the AS. This beverage is rich in bioactive compounds, such as polyphenols and dietary fiber, which will bring health benefits when consumed.


Asunto(s)
Agave , Antioxidantes , Jugos de Frutas y Vegetales , Agave/química , Jugos de Frutas y Vegetales/análisis , Antioxidantes/química , Antioxidantes/farmacología , Antioxidantes/análisis , Fermentación , Hidroxibenzoatos/análisis , Polifenoles/análisis , Polifenoles/química , Pyrus/química , Fenoles/análisis , Fenoles/química , Ramnosa/análisis , Ramnosa/química , Catequina/análisis , Catequina/química , Catequina/análogos & derivados , Ácidos Hexurónicos
4.
Org Biomol Chem ; 20(14): 2964-2980, 2022 04 06.
Artículo en Inglés | MEDLINE | ID: mdl-35333269

RESUMEN

Many children suffering from autism spectrum disorder (ASD) experience gastrointestinal (GI) conditions. Enterocloster bolteae has been regularly detected in the stool of individuals suffering from GI symptoms and autism. Literature has suggested that E. bolteae strains WAL 16351 and WAL 14578 produce an immunogenic capsular polysaccharide (CPS) comprised of disaccharide repeating units: α-D-Man-(1 → 4)-ß-Rha-(1 → 3) that could be used for the development of an immunotherapeutic vaccine. Ambiguity in the configuration of rhamnose led to the synthesis of tri- and disaccharide analogues containing D-rhamnose and L-rhamnose, respectively. ROESY-NMR spectra showed that CH3-6 of rhamnose and H-2 of mannose in the L-Rha containing disaccharide gave correlation. No such correlation was seen between the CH3-6 of rhamnose and the H-2 of mannose in the D-Rha containing trisaccharide. Molecular dynamics studies on hexasaccharide containing L-Rha or D-Rha confirmed that these structures adopt conformations resulting in different distances between the C6-rhamnose and the H-2 mannose of the preceding residue. We also demonstrate that assignment of the absolute configuration of the rhamnosyl residue in the ß-Rhap-(1 → 3)-D-Man linkage can be determined using the 13C chemical shift of C-2 in of D-Mannose. While ß-D-Rha will lead to an upfield shift of C-2 due to γ-gauche interaction between H-1 Rha and H-2 Man, ß-L-Rha will not. Our results provide insights to distinguish between D- and L-rhamnose in the α-D-Manp-(1 → 4)-ß-Rhap-(1 → 3) repeating motif.


Asunto(s)
Trastorno del Espectro Autista , Ramnosa , Niño , Disacáridos , Humanos , Espectroscopía de Resonancia Magnética , Manosa/química , Ramnosa/química
5.
Int J Mol Sci ; 23(23)2022 Nov 23.
Artículo en Inglés | MEDLINE | ID: mdl-36498914

RESUMEN

Trichomonas vaginalis is the causative agent of one of the most widespread sexually transmitted diseases in the world. The adhesion of the parasite to the vaginal epithelial cells is mediated by specific proteins and by a complex glycan structure, the lipoglycan (TvLG), which covers the pathogen surface. L-rhamnose is an important component of TvLG, comprising up to 40% of the monosaccharides. Thus, the inhibition of its production could lead to a severe alteration in the TvLG structure, making the L-rhamnose biosynthetic pathway an attractive pharmacologic target. We report the identification and characterization of the first committed and limiting step of the L-rhamnose biosynthetic pathway, UDP-D-glucose 4,6-dehydratase (UGD, EC 4.2.1.76). The enzyme shows a strong preference for UDP-D-glucose compared to dTDP-D-glucose; we propose that the mechanism underlying the higher affinity for the UDP-bound substrate is mediated by the differential recognition of ribose versus the deoxyribose of the nucleotide moiety. The identification of the enzymes responsible for the following steps of the L-rhamnose pathway (epimerization and reduction) was more elusive. However, sequence analyses suggest that in T. vaginalis L-rhamnose synthesis proceeds through a mechanism different from the typical eukaryotic pathways, displaying intermediate features between the eukaryotic and prokaryotic pathways and involving separate enzymes for the epimerase and reductase activities, as observed in bacteria. Altogether, these results form the basis for a better understanding of the formation of the complex glycan structures on TvLG and the possible use of L-rhamnose biosynthetic enzymes for the development of selective inhibitors.


Asunto(s)
Ramnosa , Trichomonas vaginalis , Femenino , Humanos , Ramnosa/química , Vías Biosintéticas , Glucosa , Hidroliasas/metabolismo , Uridina Difosfato/metabolismo
6.
Zhongguo Zhong Yao Za Zhi ; 47(12): 3208-3214, 2022 Jun.
Artículo en Zh | MEDLINE | ID: mdl-35851113

RESUMEN

Uridine diphosphate rhamnose(UDP-Rha), a glycoside donor synthesized with the catalysis of rhamnose synthase(RHM), is one of the important elements in the synthesis of rhamnosides. In this study, we cloned a RHM gene from Citrus sinensis(CsRHM) and analyzed its bioinformatic information and functions in vitro. The results showed the gene consisted of an open reading frame of 2 007 bp encoding 668 amino acid residues. The deduced protein had a presumed molecular weight of 75.27 kDa, a theoretical isoelectric point of 6.97, and the characteristic signal sequences(GxxxGxxG/A and YxxxK) of the RHM family. Multiple sequence alignments and the phylogenetic tree demonstrated that CsRHM shared homology with other RHMs. The results of enzymatic reactions in vitro showed that the recombinant protein CsRHM catalyzed the conversion of UDP-Glu to UDP-Rha, with the kinetic parameters V_(max), K_m, K_(cat), and K_(cat)/K_m of 0.373 7 µmol·L~(-1)·min~(-1), 21.29 µmol·L~(-1), 0.24 s~(-1), and 1.13×10~4 s~(-1)·L·mol~(-1), respectively. This study is the first report about CsRHM with validated catalytic function in vitro, which provides a foundation for further research on the biosynthesis of UDP-Rha.


Asunto(s)
Citrus sinensis , Citrus sinensis/genética , Citrus sinensis/metabolismo , Clonación Molecular , Filogenia , Ramnosa/química , Ramnosa/metabolismo , Azúcares de Uridina Difosfato
7.
J Enzyme Inhib Med Chem ; 36(1): 1798-1809, 2021 Dec.
Artículo en Inglés | MEDLINE | ID: mdl-34348556

RESUMEN

Identifying isoform-specific inhibitors for closely related kinase family members remains a substantial challenge. The necessity for achieving this specificity is exemplified by the RSK family, downstream effectors of ERK1/2, which have divergent physiological effects. The natural product, SL0101, a flavonoid glycoside, binds specifically to RSK1/2 through a binding pocket generated by an extensive conformational rearrangement within the RSK N-terminal kinase domain (NTKD). In modelling experiments a single amino acid that is divergent in RSK3/4 most likely prevents the required conformational rearrangement necessary for SL0101 binding. Kinetic analysis of RSK2 association with SL0101 and its derivatives identified that regions outside of the NTKD contribute to stable inhibitor binding. An analogue with an n-propyl-carbamate at the 4" position on the rhamnose moiety was identified that forms a highly stable inhibitor complex with RSK2 but not with RSK1. These results identify a SL0101 modification that will aid the identification of RSK2 specific inhibitors.


Asunto(s)
Benzopiranos/síntesis química , Monosacáridos/síntesis química , Inhibidores de Proteínas Quinasas/síntesis química , Proteínas Quinasas S6 Ribosómicas 90-kDa/antagonistas & inhibidores , Secuencia de Aminoácidos , Benzopiranos/metabolismo , Carbamatos/química , Humanos , Cinética , Modelos Moleculares , Monosacáridos/metabolismo , Unión Proteica , Conformación Proteica , Inhibidores de Proteínas Quinasas/metabolismo , Ramnosa/química , Proteínas Quinasas S6 Ribosómicas 90-kDa/genética , Relación Estructura-Actividad
8.
Chem Pharm Bull (Tokyo) ; 69(1): 124-140, 2021.
Artículo en Inglés | MEDLINE | ID: mdl-33390514

RESUMEN

Herein, we describe two counterexamples of the previously reported ß/α-selectivity of 96/4 for glycosylation using ethyl 2-O-[2,3,4-tris-O-tert-butyldimethylsilyl (TBS)-α-L-rhamnopyranosyl]-3,4,6-tris-O-TBS-thio-ß-D-glucopyranoside as the glycosyl donor. Furthermore, we investigated the effects of protecting group on the rhamnose moieties in the glycosylation with cholestanol and revealed that ß-selectivity originated from the two TBS groups at the 3-O and 4-O positions of rhamnose. In contrast, the TBS group at the 2-O position of rhamnose hampered the ß-selectivity. Finally, the ß/α-selectivity during the glycosylation was enhanced to ≥99/1. The results obtained herein suggest that the protecting groups on the sugar connected to the 2-O of a glycosyl donor with axial-rich conformation can control the stereoselectivity of glycosylation.


Asunto(s)
Sustancias Protectoras/síntesis química , Ramnosa/química , Azúcares/química , Conformación de Carbohidratos , Glicosilación , Sustancias Protectoras/química , Estereoisomerismo
9.
Pak J Pharm Sci ; 34(2): 629-634, 2021 Mar.
Artículo en Inglés | MEDLINE | ID: mdl-34275839

RESUMEN

Various epidemiological researches have shown that consumption of vegetables and fruits are essential to maintain health and prevent diseases but the emergence of more and more drug resistance bacteria has led to high mortality. Thus the study of the antimicrobial and antioxidant activities of a flavonoid (Catechin-3-o-rhamnoside) isolated for the first time from Lannea kerstingii. Catechin-3-o-rhamnoside was isolated using dry vacuum liquid chromatography. It was characterized using 1H-NMR, 13C-NMR and 2D NMR spectra. The antimicrobial activity was determined using agar diffusion and broth dilution method. Antioxidant activity was determined through reaction of the compound with DPPH radical. The compound was active against, Methicillin Resistant Staphylococcus aureus, S. aureus, B. subtilis, E. coli, K. pneumoniae, S. typhi, S. dysentariae, C. albicans and C. tropicalis with zone of inhibition ranging from 22.0±0.1 to 35.0±0.2mm and inactive against vancomycin resistant enterococci, Proteus mirabilis and C. ulcerans. The MIC ranged from 6.25 to 12.5µg/ml while the MBC/MFC ranged from 12.5 to 50.0µg/ml. The compound showed a high radical scavenging activity with EC50 of 46.87µg/ml. These results show a potential lead drug for resistant bacteria and natural antioxidants.


Asunto(s)
Anacardiaceae , Antiinfecciosos/farmacología , Antioxidantes/farmacología , Catequina/análogos & derivados , Glicósidos/farmacología , Corteza de la Planta , Extractos Vegetales/farmacología , Antiinfecciosos/química , Antioxidantes/química , Bacillus subtilis/efectos de los fármacos , Candida albicans/efectos de los fármacos , Candida tropicalis/efectos de los fármacos , Catequina/química , Catequina/farmacología , Corynebacterium/efectos de los fármacos , Escherichia coli/efectos de los fármacos , Glicósidos/química , Klebsiella pneumoniae/efectos de los fármacos , Staphylococcus aureus Resistente a Meticilina/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Extractos Vegetales/química , Ramnosa/química , Ramnosa/farmacología , Salmonella typhi/efectos de los fármacos , Shigella dysenteriae/efectos de los fármacos , Staphylococcus aureus/efectos de los fármacos , Enterococos Resistentes a la Vancomicina/efectos de los fármacos
10.
J Biol Chem ; 294(23): 9172-9185, 2019 06 07.
Artículo en Inglés | MEDLINE | ID: mdl-31010825

RESUMEN

The 6-deoxy sugar l-rhamnose (l-Rha) is found widely in plant and microbial polysaccharides and natural products. The importance of this and related compounds in host-pathogen interactions often means that l-Rha plays an essential role in many organisms. l-Rha is most commonly biosynthesized as the activated sugar nucleotide uridine 5'-diphospho-ß-l-rhamnose (UDP-ß-l-Rha) or thymidine 5'-diphospho-ß-l-rhamnose (TDP-ß-l-Rha). Enzymes involved in the biosynthesis of these sugar nucleotides have been studied in some detail in bacteria and plants, but the activated form of l-Rha and the corresponding biosynthetic enzymes have yet to be explored in algae. Here, using sugar-nucleotide profiling in two representative algae, Euglena gracilis and the toxin-producing microalga Prymnesium parvum, we show that levels of UDP- and TDP-activated l-Rha differ significantly between these two algal species. Using bioinformatics and biochemical methods, we identified and characterized a fusion of the RmlC and RmlD proteins, two bacteria-like enzymes involved in TDP-ß-l-Rha biosynthesis, from P. parvum Using this new sequence and also others, we explored l-Rha biosynthesis among algae, finding that although most algae contain sequences orthologous to plant-like l-Rha biosynthesis machineries, instances of the RmlC-RmlD fusion protein identified here exist across the Haptophyta and Gymnodiniaceae families of microalgae. On the basis of these findings, we propose potential routes for the evolution of nucleoside diphosphate ß-l-Rha (NDP-ß-l-Rha) pathways among algae.


Asunto(s)
Proteínas Algáceas/metabolismo , Carbohidrato Epimerasas/metabolismo , Haptophyta/metabolismo , Ramnosa/biosíntesis , Proteínas Algáceas/genética , Carbohidrato Epimerasas/clasificación , Carbohidrato Epimerasas/genética , Filogenia , Plastidios/metabolismo , Proteínas Recombinantes de Fusión/genética , Proteínas Recombinantes de Fusión/metabolismo , Ramnosa/química , Simbiosis
11.
Plant J ; 99(2): 257-269, 2019 07.
Artículo en Inglés | MEDLINE | ID: mdl-30893500

RESUMEN

Glycosylation is a key modification for most molecules including plant natural products, for example, flavonoids and isoflavonoids, and can enhance the bioactivity and bioavailability of the natural products. The crystal structure of plant rhamnosyltransferase UGT89C1 from Arabidopsis thaliana was determined, and the structures of UGT89C1 in complexes with UDP-ß-l-rhamnose and acceptor quercetin revealed the detailed interactions between the enzyme and its substrates. Structural and mutational analysis indicated that Asp356, His357, Pro147 and Ile148 are key residues for sugar donor recognition and specificity for UDP-ß-l-rhamnose. The mutant H357Q exhibited activity with both UDP-ß-l-rhamnose and UDP-glucose. Structural comparison and mutagenesis confirmed that His21 is a key residue as the catalytic base and the only catalytic residue involved in catalysis independently as UGT89C1 lacks the other catalytic Asp that is highly conserved in other reported UGTs and forms a hydrogen bond with the catalytic base His. Ser124 is located in the corresponding position of the catalytic Asp in other UGTs and is not able to form a hydrogen bond with His21. Mutagenesis further showed that Ser124 may not be important in its catalysis, suggesting that His21 and acceptor may form an acceptor-His dyad and UGT89C1 utilizes a catalytic dyad in catalysis instead of catalytic triad. The information of structure and mutagenesis provides structural insights into rhamnosyltransferase substrate specificity and rhamnosylation mechanism.


Asunto(s)
Proteínas de Arabidopsis/química , Arabidopsis/metabolismo , Hexosiltransferasas/química , Ramnosa/química , Proteínas de Arabidopsis/metabolismo , Sitios de Unión , Cristalografía por Rayos X , Análisis Mutacional de ADN , Hexosiltransferasas/metabolismo , Hexosiltransferasas/fisiología , Quercetina/química , Quercetina/metabolismo , Ramnosa/metabolismo
12.
Plant J ; 100(5): 879-891, 2019 12.
Artículo en Inglés | MEDLINE | ID: mdl-31400245

RESUMEN

Type 2 diabetes (T2D) affects over 320 million people worldwide. Healthy lifestyles, improved drugs and effective nutraceuticals are different components of a response against the growing T2D epidemic. The specialized metabolite montbretin A (MbA) is being developed for treatment of T2D and obesity due to its unique pharmacological activity as a highly effective and selective inhibitor of the human pancreatic α-amylase. MbA is an acylated flavonol glycoside found in small amounts in montbretia (Crocosmia × crocosmiiflora) corms. MbA cannot be obtained in sufficient quantities for drug development from its natural source or by chemical synthesis. To overcome these limitations through metabolic engineering, we are investigating the genes and enzymes of MbA biosynthesis. We previously reported the first three steps of MbA biosynthesis from myricetin to myricetin 3-O-(6'-O-caffeoyl)-glucosyl rhamnoside (mini-MbA). Here, we describe the sequence of reactions from mini-MbA to MbA, and the discovery and characterization of the gene and enzyme responsible for the glucosylation of mini-MbA. The UDP-dependent glucosyltransferase CcUGT3 (UGT703E1) catalyzes the 1,2-glucosylation of mini-MbA to produce myricetin 3-O-(glucosyl-6'-O-caffeoyl)-glucosyl rhamnoside. Co-expression of CcUGT3 with genes for myricetin and mini-MbA biosynthesis in Nicotiana benthamiana validated its biological function and expanded the set of genes available for metabolic engineering of MbA.


Asunto(s)
Diabetes Mellitus Tipo 2/tratamiento farmacológico , Flavonas/biosíntesis , Glucosiltransferasas/metabolismo , Hipoglucemiantes/metabolismo , Ingeniería Metabólica/métodos , Trisacáridos/biosíntesis , Ácidos Cafeicos/química , Ácidos Cafeicos/metabolismo , Flavonas/química , Flavonas/farmacología , Flavonas/uso terapéutico , Flavonoides/química , Flavonoides/metabolismo , Flavonoles/química , Flavonoles/metabolismo , Perfilación de la Expresión Génica , Regulación de la Expresión Génica de las Plantas/genética , Glucosa/química , Glucosa/metabolismo , Glicósidos/química , Glicósidos/metabolismo , Glicosilación , Hipoglucemiantes/química , Hipoglucemiantes/farmacología , Hipoglucemiantes/uso terapéutico , Iridaceae/química , Iridaceae/enzimología , Filogenia , Proteínas de Plantas/metabolismo , Tallos de la Planta/química , Tallos de la Planta/metabolismo , Plantas Modificadas Genéticamente , Ramnosa/química , Ramnosa/metabolismo , Metabolismo Secundario , Biología Sintética/métodos , Nicotiana/metabolismo , Transcriptoma/genética , Trisacáridos/química , Trisacáridos/farmacología , Trisacáridos/uso terapéutico , Xilosa/química , Xilosa/metabolismo
13.
Nat Chem Biol ; 14(4): 368-374, 2018 04.
Artículo en Inglés | MEDLINE | ID: mdl-29440735

RESUMEN

Protein glycosylation regulates many cellular processes. Numerous glycosyltransferases with broad substrate specificities have been structurally characterized. A novel inverting glycosyltransferase, EarP, specifically transfers rhamnose from dTDP-ß-L-rhamnose to Arg32 of bacterial translation elongation factor P (EF-P) to activate its function. Here we report a crystallographic study of Neisseria meningitidis EarP. The EarP structure contains two tandem Rossmann-fold domains, which classifies EarP in glycosyltransferase superfamily B. In contrast to other structurally characterized protein glycosyltransferases, EarP binds the entire ß-sheet structure of EF-P domain I through numerous interactions that specifically recognize its conserved residues. Thus Arg32 is properly located at the active site, and causes structural change in a conserved dTDP-ß-L-rhamnose-binding loop of EarP. Rhamnosylation by EarP should occur via an SN2 reaction, with Asp20 as the general base. The Arg32 binding and accompanying structural change of EarP may induce a change in the rhamnose-ring conformation suitable for the reaction.


Asunto(s)
Arginina/química , Proteínas Bacterianas/metabolismo , Glicosiltransferasas/metabolismo , Factores de Elongación de Péptidos/metabolismo , Ramnosa/química , Cristalografía por Rayos X , Disulfuros , Escherichia coli/metabolismo , Glicosilación , Cinética , Mutación , Neisseria meningitidis/metabolismo , Azúcares de Nucleósido Difosfato , Unión Proteica , Dominios Proteicos , Estructura Secundaria de Proteína , Nucleótidos de Timina
14.
Biomacromolecules ; 21(2): 793-802, 2020 02 10.
Artículo en Inglés | MEDLINE | ID: mdl-31829561

RESUMEN

Synthetic materials capable of engineering the immune system are of great relevance in the fight against cancer to replace or complement the current monoclonal antibody and cell therapy-based immunotherapeutics. Here, we report on antibody recruiting glycopolymers (ARGPs). ARGPs consist of polymeric copies of a rhamnose motif, which can bind endogenous antirhamnose antibodies present in human serum. As a proof-of-concept, we have designed ARGPs with a lipophilic end group that efficiently inserts into cell-surface membranes. We validate the specificity of rhamnose to attract antibodies from human serum to the target cell surface and demonstrate that ARGPs outperform an analogous small-molecule compound containing only one single rhamnose motif. The ARGP concept opens new avenues for the design of potent immunotherapeutics that mark target cells for destruction by the immune system through antibody-mediated effector functions.


Asunto(s)
Anticuerpos Monoclonales/metabolismo , Formación de Anticuerpos/fisiología , Polímeros/metabolismo , Receptores de Superficie Celular/metabolismo , Ramnosa/metabolismo , Adolescente , Adulto , Anciano , Anticuerpos Monoclonales/química , Línea Celular Tumoral , Femenino , Humanos , Células Jurkat , Masculino , Persona de Mediana Edad , Polímeros/química , Unión Proteica/fisiología , Receptores de Superficie Celular/química , Ramnosa/química , Adulto Joven
15.
Org Biomol Chem ; 18(17): 3216-3228, 2020 05 06.
Artículo en Inglés | MEDLINE | ID: mdl-32270840

RESUMEN

l-Rhamnose forms the key components of important antigenic oligo- and polysaccharides of a variety of pathogens. Obtaining 1,2-cis stereoselectivity in the glycosylation of l-rhamnoside is quite challenging due to the unavailability of neighboring group participation and disfavoring of the anomeric effect and stereoelectronic effect of the substituents on the C-2 axial position. Nevertheless, various methodologies have been developed exploiting diverse pathways for obtaining ß-stereoselectivity in the glycosylation of l-rhamnose. This review describes the recent advances in ß-l-rhamnosylation and its applications in the total synthesis of ß-l-rhamnose-containing biologically important oligosaccharides.


Asunto(s)
Oligosacáridos/síntesis química , Ramnosa/química , Ácidos Borínicos/química , Catálisis , Glicosilación , Oro/química , Enlace de Hidrógeno , Estructura Molecular , Estereoisomerismo
16.
Mar Drugs ; 18(5)2020 May 20.
Artículo en Inglés | MEDLINE | ID: mdl-32443698

RESUMEN

Rhamnolipids (RLs) are surface-active molecules mainly produced by Pseudomonas spp. Antarctica is one of the less explored places on Earth and bioprospecting for novel RL producer strains represents a promising strategy for the discovery of novel structures. In the present study, 34 cultivable bacteria isolated from Edmonson Point Lake, Ross Sea, Antarctica were subjected to preliminary screening for the biosurfactant activity. The positive strains were identified by 16S rRNA gene sequencing and the produced RLs were characterized by liquid chromatography coupled to high resolution mass spectrometry (LC-HRESIMS) and liquid chromatography coupled with tandem spectrometry (LC-MS/MS), resulting in a new mixture of 17 different RL congeners, with six previously undescribed RLs. We explored the influence of the carbon source on the RL composition using 12 different raw materials, such as monosaccharides, polysaccharides and petroleum industry derivatives, reporting for the first time the production of RLs using, as sole carbon source, anthracene and benzene. Moreover, we investigated the antimicrobial potential of the RL mixture, towards a panel of both Gram-positive and Gram-negative pathogens, reporting very interesting results towards Listeria monocytogenes with a minimum inhibitory concentration (MIC) value of 3.13 µg/mL. Finally, we report for the first time the antimicrobial activity of RLs towards three strains of the emerging multidrug resistant Stenotrophomonas maltophilia with MIC values of 12.5 µg/ml.


Asunto(s)
Antibacterianos/farmacología , Decanoatos/farmacología , Pseudomonas , Ramnosa/análogos & derivados , Tensoactivos/química , Animales , Regiones Antárticas , Decanoatos/química , Humanos , Listeria monocytogenes/efectos de los fármacos , Pruebas de Sensibilidad Microbiana , Ramnosa/química , Ramnosa/farmacología , Stenotrophomonas maltophilia/efectos de los fármacos
17.
Molecules ; 25(14)2020 Jul 09.
Artículo en Inglés | MEDLINE | ID: mdl-32659971

RESUMEN

A rhamnose targeting strategy for generating effective anticancer vaccines was successful in our previous studies. We showed that by utilizing natural anti-rhamnose antibodies, a rhamnose-containing vaccine can be targeted to antigen-presenting cells, such as dendritic cells. In this case, rhamnose (Rha) was linked directly to the liposomes bearing the antigen. However, in the current approach, we conjugated a multivalent Tri-Rha ligand with the antigen itself, making it a single component vaccine construct, unlike the previous two-component vaccine construct where Rha cholesterol and Mucin1 (MUC1) antigen were both linked separately to the liposomes. Synthesis required the development of a linker for coupling of the Rha-Ser residues. We compared those two systems in a mouse model and found increased production of anti-MUC1 antibodies and more primed antigen-specific CD4+ T cells in both of the targeted approaches when compared to the control group, suggesting that this one-component vaccine construct could be a potential design used in our MUC1 targeting mechanisms.


Asunto(s)
Linfocitos T CD4-Positivos/inmunología , Vacunas contra el Cáncer , Células Dendríticas/inmunología , Mucina-1 , Ramnosa , Animales , Vacunas contra el Cáncer/química , Vacunas contra el Cáncer/inmunología , Vacunas contra el Cáncer/farmacología , Femenino , Liposomas , Ratones , Mucina-1/química , Mucina-1/inmunología , Mucina-1/farmacología , Ramnosa/química , Ramnosa/inmunología , Ramnosa/farmacología
18.
Molecules ; 25(3)2020 Jan 28.
Artículo en Inglés | MEDLINE | ID: mdl-32012953

RESUMEN

A major impediment to successful cancer treatment is the inability of clinically available drugs to kill drug-resistant cancer cells. We recently identified metabolically stable L-glucosamine-based glycosylated antitumor ether lipids (GAELs) that were cytotoxic to chemotherapy-resistant cancer cells. In the absence of commercially available L-glucosamine, many steps were needed to synthesize the compound and the overall yield was poor. To overcome this limitation, a facile synthetic procedure using commercially available L-sugars including L-rhamnose and L-glucose were developed and the L-GAELs tested for anticancer activity. The most potent analog synthesized, 3-amino-1-O-hexadecyloxy-2R-(O-α-L-rhamnopyranosyl)-sn- glycerol 3, demonstrated a potent antitumor effect against human cancer cell lines derived from breast, prostate, and pancreas. The activity observed was superior to that observed with clinical anticancer agents including cisplatin and chlorambucil. Moreover, like other GAELs, 3 induced cell death by a non-membranolytic caspase-independent pathway.


Asunto(s)
Antineoplásicos/síntesis química , Caspasas/metabolismo , Glicéridos/síntesis química , Neoplasias/metabolismo , Ramnosa/química , Antineoplásicos/química , Antineoplásicos/farmacología , Línea Celular Tumoral , Proliferación Celular/efectos de los fármacos , Supervivencia Celular/efectos de los fármacos , Ensayos de Selección de Medicamentos Antitumorales , Glicéridos/química , Glicéridos/farmacología , Humanos , Estructura Molecular , Neoplasias/tratamiento farmacológico , Células PC-3 , Relación Estructura-Actividad
19.
J Bacteriol ; 201(13)2019 07 01.
Artículo en Inglés | MEDLINE | ID: mdl-31010899

RESUMEN

A bacterial inverting glycosyltransferase EarP transfers rhamnose from dTDP-ß-l-rhamnose (TDP-Rha) to Arg32 of translation elongation factor P (EF-P) to activate its function. We report here the structural and biochemical characterization of Pseudomonas aeruginosa EarP. In contrast to recently reported Neisseria meningitidis EarP, P. aeruginosa EarP exhibits differential conformational changes upon TDP-Rha and EF-P binding. Sugar donor binding enhances acceptor binding to EarP, as revealed by structural comparison between the apo-, TDP-Rha-, and TDP/EF-P-bound forms and isothermal titration calorimetry experiments. In vitro EF-P rhamnosylation combined with active-site geometry indicates that Asp16 corresponding to Asp20 of N. meningitidis EarP is the catalytic base, whereas Glu272 is another putative catalytic residue. Our study should provide the basis for EarP-targeted inhibitor design against infections from P. aeruginosa and other clinically relevant species.IMPORTANCE Posttranslational rhamnosylation of EF-P plays a key role in Pseudomonas aeruginosa, establishing virulence and antibiotic resistance, as well as survival. The detailed structural and biochemical characterization of the EF-P-specific rhamnosyltransferase EarP from P. aeruginosa not only demonstrates that sugar donor TDP-Rha binding enhances acceptor EF-P binding to EarP but also should provide valuable information for the structure-guided development of its inhibitors against infections from P. aeruginosa and other EarP-containing pathogens.


Asunto(s)
Arginina/química , Proteínas Bacterianas/química , Hexosiltransferasas/química , Factores de Elongación de Péptidos/química , Pseudomonas aeruginosa/enzimología , Ramnosa/química , Dominio Catalítico , Cristalografía por Rayos X , Unión Proteica
20.
Chemistry ; 25(68): 15508-15515, 2019 Dec 05.
Artículo en Inglés | MEDLINE | ID: mdl-31613028

RESUMEN

We have developed a fully synthetic and multifunctional antibody-recruiting molecule (ARM) to guide natural antibodies already present in the blood stream against cancer cells without pre-immunization. Our ARM is composed of antibody and tumor binding modules (i.e., ABM and TBM) displaying clustered rhamnose and cyclo-RGD, respectively. By using a stepwise approach, we have first demonstrated the importance of multivalency for efficient recognition with naturel IgM and αv ß3 integrin expressing M21 tumor cell line. Once covalently conjugated by click chemistry, we confirmed by flow cytometry and confocal microscopy that the recognition properties of both the ABM and TBM are conserved, and more importantly, that the resulting ARM promotes the formation of a ternary complex between natural IgM and cancer cells, which is required for the stimulation of the cytotoxic immune response in vivo. Due to the efficiency of the synthetic process, a larger diversity of heterovalent ligands could be easily explored by using the same multivalent approach and could open new perspectives in this field.


Asunto(s)
Anticuerpos/inmunología , Glicoconjugados/química , Integrina alfaVbeta3/metabolismo , Ramnosa/química , Línea Celular Tumoral , Química Clic , Citometría de Flujo , Humanos , Inmunización , Integrina alfaVbeta3/química , Ligandos
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