Multiple factors influence bacterial community diversity and composition in soils with rare earth element and heavy metal co-contamination.

The effects of long-term rare earth element (REE) and heavy metal (HM) contamination on soil bacterial communities remains poorly understood. In this study, soil samples co-contaminated with REEs and HMs were collected from a rare-earth tailing dam. The bacterial community composition and diversity were analyzed through Illumina high-throughput sequencing with 16S rRNA gene amplicons. Bacterial community richness and diversity were lower in the co-contaminated soils than in the uncontaminated soils, with clearly different bacterial community compositions. The results showed that total organic carbon and available potassium were the most important factors affecting bacterial community richness and diversity, followed by the REE and HM contents. Although the canonical correspondence analysis results showed that an REE alone had no obvious effects on bacterial community structures, we found that the combined effects of soil physicochemical properties and REE and HM contents regulated bacterial community structure and composition. The effects of REEs and HMs on bacterial communities were similar, whereas their combined contributions were greater than the individual effects of REEs or HMs. Some bacterial taxa were worth noting. These specifically included the plant growth-promoting bacteria Exiguobacterium (sensitive to REEs and HMs) and oligotrophic microorganisms with metal tolerance (prevalent in contaminated soil); moreover, relative abundance of JTB255-Marine Benthic Group, Rhodobacteraceae, Erythrobacter, and Truepera may be correlated with REEs. This study was the first to investigate the responses of bacterial communities to REE and HM co-contamination. The current results have major implications for the ecological risk assessment of environments co-contaminated with REEs and HMs.

[Characteristics and Dominant Influencing Factors of the Fungal Community Structure in Soils Co-contaminated with Rare Earth Elements and Heavy Metals].

Rare earth elements (REEs) have been listed as emerging pollutants and are often enriched together in soils with heavy metals (HMs), which results in ecological crises. The ecological effects caused by REEs have been attracting increasing amounts of attention, but most studies neglect the synergistic effect of REEs and HMs. The soil fungal community plays an important role in maintaining ecosystem functions, and understanding the fungal community structure and its dominant influencing factors in the co-contaminated soils will help to develop soil remediation strategies that could reduce or remedy the impacts of human production activities on the environment. Currently, the effects of long-term contamination of REEs and HMs on the soil fungal communities remain unclear. The Baotou rare earth tailings dam (Inner Mongolia, China) was used as the area of study, and soil samples co-contaminated with REEs and HMs were collected. Illumina high-throughput sequencing with ITS1 gene amplicons was used to analyze the fungal community diversity and structural characteristics. The results showed that the heterogeneity of soil environmental variables determined the distribution of fungal communities in a small area and constituted its own unique ecological niche in the co-contaminated environment. The fungal community richness and diversity in the co-contaminated soils were significantly lower than those in the uncontaminated soils, and the composition of the fungal community was significantly different. The results of a random forest (RF) analysis showed that TN was the most important factor that affected the fungal community richness and diversity, followed by REEs, Zn, and AK. The results of a canonical correspondence analysis (CCA) showed that Zn was the most important factor that affected the fungal community structure. A variation partitioning analysis (VPA) was performed to quantify the relative contributions of different environmental variables on the changes in fungal community structure, and the analytical results showed that all the detected environmental variables could explain 93.3% of the variation in soil fungal community. The combined effect of soil physicochemical properties and pollution factors (REEs and HMs) accounted for 58.5% of the total variation, and their contribution alone accounted for 13.5% and 21%, respectively. The effects of these pollution factors on the fungal communities were slightly higher than those of the soil physicochemical properties. The synergistic contributions of REEs and HMs were 40.1%, and their individual effects were 21.8% and 17.9%, respectively. Therefore, the soil physicochemical properties, REEs, and HMs regulated the fungal community structure and composition in concert. The synergistic contributions of REEs and HMs were greater than their individual effects, and these results suggest that it is necessary to further strengthen the risk control of the co-contamination of REEs and HMs in the soil environment.

[An improved method for inversion of particle size distribution from scattering spectrum].

To reduce noise in the inversion for diffraction measurement of particle size distribution from scattering spectrum, an improved method was proposed. A regulate function was induced in the Chin-Shrine integral transform that led to the noise disappearing and didn't affect the peak of inversion spectrum. The improved method was tested using linear CCD detector array. The result showed that the method largely improved previous results because of using the regulate function, and it is feasible and effective. The authors also explained that selecting the minimum and maximum of sampling angle by way of the different focal length reduced the different trouble of inversion spectrum. Using suitable focal length achieved good results in actual measurements.

Enrichment of Type I Methanotrophs with nirS Genes of Three Emergent Macrophytes in a Eutrophic Wetland in China.

The pmoA gene, encoding particulate methane monooxygenase in methanotrophs, and nirS and nirK genes, encoding bacterial nitrite reductases, were examined in the root and rhizosphere sediment of three common emergent macrophytes (Phragmites australis, Typha angustifolia, and Scirpus triqueter) and unvegetated sediment from eutrophic Wuliangsuhai Lake in China. Sequencing analyses indicated that 334 out of 351 cloned pmoA sequences were phylogenetically the most closely related to type I methanotrophs (Gammaproteobacteria), and Methylomonas denitrificans-like organisms accounted for 44.4% of the total community. In addition, 244 out of 250 cloned nirS gene sequences belonged to type I methanotrophs, and 31.2% of nirS genes were the most closely related to paddy rice soil clone SP-2-12 in Methylomonas of the total community. Three genera of type I methanotrophs, Methylomonas, Methylobacter, and Methylovulum, were common in both pmoA and nirS clone libraries in each sample. A quantitative PCR (qPCR) analysis demonstrated that the copy numbers of the nirS and nirK genes were significantly higher in rhizosphere sediments than in unvegetated sediments in P. australis and T. angustifolia plants. In the same sample, the nirS gene copy number was significantly higher than that of nirK. Furthermore, type I methanotrophs were localized in the root tissues according to catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH). Thus, nirS-carrying type I methanotrophs were enriched in macrophyte root and rhizosphere sediment and are expected to play important roles in carbon/nitrogen cycles in a eutrophic wetland.

[Moderate grazing increases the abundance of soil methane-oxidizing bacteria and CH4 uptake rate in a typical steppe of Inner Mongolia, China.] / é€‚åº¦æ”¾ç‰§å¢žåŠ å† è’™å¤å ¸åž‹è‰åŽŸç”²çƒ·æ°§åŒ–èŒä¸°åº¦å’Œç”²çƒ·å¸æ”¶.

Microbial oxidation is the only biological sink of atmospheric methane (CH4). It is essential to understand the variation of CH4 fluxes among different grassland use types for developing low-emission management system. Here, we measured the CH4 flux and the soil methane-oxidizing bacteria abundance in a typical steppe under grazing, mowing and fencing management in central Inner Mongolia, with the aims to determine the effects of these grassland use types on CH4 flux, and to test the hypothesis that pmoA functional gene abundance regulates CH4 fluxes. The measurements were conducted on the experimental grassland that had experienced four grassland use treatments over five years. The treatments were whole growing season grazing from May to September (T1), spring and summer grazing (twice in May and July)(T2), autumn mowing (T3) and enclosure (T0). We measured CH4 flux using static chamber method, and quantified the abundance of pmoA functional genes using molecular techniques. Moreover, we measured plant biomass and soil physicochemical properties. The results showed that moderate grazing significantly enhanced CH4 uptake rate and the methane-oxidizing bacteria abundance (i.e., the pmoA gene copy number per gram of dry soil). The pmoA gene copy number ranged from 6.9×104 to 3.9×105 per gram of dry soil in growing season. The CH4 uptake rate was (68.21±3.01) µg·m-2·h-1 under T1, which was 22.1%, 37.5% and 30.9% higher than that under T2, T3 or T0 , respectively. The CH4 uptake rate was positively correlated with abundance of CH4 oxidizing bacteria and soil sand content, but negatively correlated with soil silt content, soil moisture, NH4+-N and NO3--N content, and plant biomass. These results suggested that the steppe ecosystem is a CH4 sink under all land-use types in central Inner Mongolia, and that moderate grazing would enhance methane-oxidizing bacteria abundance and CH4 uptake by improving soil sand content, reducing soil mineral nitrogen content and plant production in the typical steppe ecosystem. These results were of significance for the development of low-emission grassland management system.

Differential surface plasmon polaritons transmission line with controllable common mode rejection.

In this paper, a spoof surface plasmon polarions (SPPs) transmission line is designed by patterning thin metal film in open-cross shape arranged in array. Numerical simulations show the proposed open-cross array can support spoof SPPs with enlarged propagation constant and hence enhanced confinement at metal/dielectric interface as compared to the reported ultra-thin plasmonic waveguide with the rectangular groove or solid-cross. Furthermore, a differential transmission line pair is built with such two close plasmonic arrays. A narrow metal strip locates at the symmetrical plane of the two SPPs waveguides and acts as a resonator to realize common-mode rejection at specific frequency. The notch frequency for common mode can be adjusted by tuning the metal strip length of the resonator while differential mode propagation remains unaffected. Both simulated and experimental results with good agreement are given to verify the proposed idea.