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1.
Nanotechnology ; 34(35)2023 Jun 15.
Artigo em Inglês | MEDLINE | ID: mdl-37100049

RESUMO

This paper explores how the Schottky barrier (SB) transistor is used in a variety of applications and material systems. A discussion of SB formation, current transport processes, and an overview of modeling are first considered. Three discussions follow, which detail the role of SB transistors in high performance, ubiquitous and cryogenic electronics. For high performance computing, the SB typically needs to be minimized to achieve optimal performance and we explore the methods adopted in carbon nanotube technology and two-dimensional electronics. On the contrary for ubiquitous electronics, the SB can be used advantageously in source-gated transistors and reconfigurable field-effect transistors (FETs) for sensors, neuromorphic hardware and security applications. Similarly, judicious use of an SB can be an asset for applications involving Josephson junction FETs.

3.
Front Comput Neurosci ; 17: 1164472, 2023.
Artigo em Inglês | MEDLINE | ID: mdl-37465646

RESUMO

Classification and recognition tasks performed on photonic hardware-based neural networks often require at least one offline computational step, such as in the increasingly popular reservoir computing paradigm. Removing this offline step can significantly improve the response time and energy efficiency of such systems. We present numerical simulations of different algorithms that utilize ultrafast photonic spiking neurons as receptive fields to allow for image recognition without an offline computing step. In particular, we discuss the merits of event, spike-time and rank-order based algorithms adapted to this system. These techniques have the potential to significantly improve the efficiency and effectiveness of optical classification systems, minimizing the number of spiking nodes required for a given task and leveraging the parallelism offered by photonic hardware.

4.
PLoS One ; 17(12): e0279455, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-36584020

RESUMO

Developing mathematical representations of biological systems that can allow predictions is a challenging and important research goal. It is demonstrated here how the ribosome, the nano-machine responsible for synthesizing all proteins necessary for cellular life, can be represented as a bipartite network. Ten ribosomal structures from Bacteria and six from Eukarya are explored. Ribosomal networks are found to exhibit unique properties despite variations in the nodes and edges of the different graphs. The ribosome is shown to exhibit very large topological redundancies, demonstrating mathematical resiliency. These results can potentially explain how it can function consistently despite changes in composition and connectivity. Furthermore, this representation can be used to analyze ribosome function within the large machinery of network theory, where the degrees of freedom are the possible interactions, and can be used to provide new insights for translation regulation and therapeutics.


Assuntos
Proteínas , Ribossomos , Ribossomos/metabolismo , Proteínas/metabolismo , Bactérias/metabolismo , Eucariotos
5.
PLoS One ; 15(10): e0239700, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-33017414

RESUMO

In the past two decades, research into the biochemical, biophysical and structural properties of the ribosome have revealed many different steps of protein translation. Nevertheless, a complete understanding of how they lead to a rapid and accurate protein synthesis still remains a challenge. Here we consider a coarse network analysis in the bacterial ribosome formed by the connectivity between ribosomal (r) proteins and RNAs at different stages in the elongation cycle. The ribosomal networks are found to be dis-assortative and small world, implying that the structure allows for an efficient exchange of information between distant locations. An analysis of centrality shows that the second and fifth domains of 23S rRNA are the most important elements in all of the networks. Ribosomal protein hubs connect to much fewer nodes but are shown to provide important connectivity within the network (high closeness centrality). A modularity analysis reveals some of the different functional communities, indicating some known and some new possible communication pathways Our mathematical results confirm important communication pathways that have been discussed in previous research, thus verifying the use of this technique for representing the ribosome, and also reveal new insights into the collective function of ribosomal elements.


Assuntos
Bactérias/genética , Redes Reguladoras de Genes/genética , Ribossomos/genética , Bactérias/metabolismo , Biologia Computacional/métodos , Biossíntese de Proteínas/genética , Biossíntese de Proteínas/fisiologia , RNA Ribossômico 23S/metabolismo , Proteínas Ribossômicas/metabolismo , Ribossomos/metabolismo , Elongação da Transcrição Genética/fisiologia
6.
Nat Nanotechnol ; 17(4): 336, 2022 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-35332295
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