Detalhe da pesquisa
1.
Resource allocation modeling for autonomous prediction of plant cell phenotypes.
Metab Eng
; 83: 86-101, 2024 May.
Artigo
em Inglês
| MEDLINE | ID: mdl-38561149
2.
BioSimulators: a central registry of simulation engines and services for recommending specific tools.
Nucleic Acids Res
; 50(W1): W108-W114, 2022 07 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35524558
3.
BiPOm: a rule-based ontology to represent and infer molecule knowledge from a biological process-centered viewpoint.
BMC Bioinformatics
; 21(1): 327, 2020 Jul 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-32703160
4.
Automated generation of bacterial resource allocation models.
Metab Eng
; 55: 12-22, 2019 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-31189086
5.
Resource allocation in living organisms.
Biochem Soc Trans
; 45(4): 945-952, 2017 08 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28687715
6.
Translation elicits a growth rate-dependent, genome-wide, differential protein production in Bacillus subtilis.
Mol Syst Biol
; 12(5): 870, 2016 05 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-27193784
7.
Optimal resource allocation enables mathematical exploration of microbial metabolic configurations.
J Math Biol
; 75(6-7): 1349-1380, 2017 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-28361242
8.
Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)).
Mol Cell Proteomics
; 13(4): 1008-19, 2014 Apr.
Artigo
em Inglês
| MEDLINE | ID: mdl-24696501
9.
Quantitative prediction of genome-wide resource allocation in bacteria.
Metab Eng
; 32: 232-243, 2015 Nov.
Artigo
em Inglês
| MEDLINE | ID: mdl-26498510
10.
BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array.
Bioinformatics
; 28(20): 2705-6, 2012 Oct 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-22764159
11.
RBAtools: a programming interface for Resource Balance Analysis models.
Bioinform Adv
; 3(1): vbad056, 2023.
Artigo
em Inglês
| MEDLINE | ID: mdl-37179703
12.
A comparative transcriptomic, fluxomic and metabolomic analysis of the response of Saccharomyces cerevisiae to increases in NADPH oxidation.
BMC Genomics
; 13: 317, 2012 Jul 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-22805527
13.
A constraint-based model analysis of the metabolic consequences of increased NADPH oxidation in Saccharomyces cerevisiae.
Metab Eng
; 14(4): 366-79, 2012 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-22709677
14.
BiPSim: a flexible and generic stochastic simulator for polymerization processes.
Sci Rep
; 11(1): 14112, 2021 07 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-34238958
15.
The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.
J Biomed Semantics
; 8(1): 53, 2017 Nov 23.
Artigo
em Inglês
| MEDLINE | ID: mdl-29169408
16.
Conversion of Glycerol to 3-Hydroxypropanoic Acid by Genetically Engineered Bacillus subtilis.
Front Microbiol
; 8: 638, 2017.
Artigo
em Inglês
| MEDLINE | ID: mdl-28458661
17.
Reconstruction of the Regulatory Network for Bacillus subtilis and Reconciliation with Gene Expression Data.
Front Microbiol
; 7: 275, 2016.
Artigo
em Inglês
| MEDLINE | ID: mdl-27047450
18.
Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.
Science
; 335(6072): 1099-103, 2012 Mar 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-22383848
19.
Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.
Science
; 335(6072): 1103-6, 2012 Mar 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-22383849
20.
Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis.
BMC Syst Biol
; 2: 20, 2008 Feb 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-18302748