Mycolicibacterium sp. strain PAM1, an alfalfa rhizosphere dweller, catabolizes PAHs and promotes partner-plant growth.

This research was focused on the isolation and characterization of a PAH-catabolizing mycobacterial strain from the petroleum hydrocarbon-contaminated rhizosphere of alfalfa, as well as on revealing some points of interaction between the microorganism and the plant. Mycolicibacterium sp. PAM1, a pyrene degrader isolated from the niche of interest to us, can catabolize fluoranthene, anthracene, fluorene, and phenanthrene. On the basis of curves of PAM1 growth with different PAHs as the sole carbon sources and on the basis of PAH-degradation rates, we found that pollutant availability to the strain decreased in the sequence phenanthrene > fluorene > fluoranthene ∼ pyrene > anthracene. For each PAH, the catabolic products were identified. PAM1 was found to have the functional genes nidA and nidB. New data modeling the 2D and 3D structures, intrinsic structural disorder, and molecular dynamics of the nidA and nidB gene products were obtained. The identified genes and intermediates of pyrene degradation indicate that PAM1 has a PAH catabolic pathway that is peculiar to known mycobacterial pyrene degraders. PAM1 utilized some components of alfalfa root exudates as nutrients and promoted plant growth. The use of mycobacterial partners of alfalfa is attractive for enhancing the phytoremediation of PAH-contaminated soils.

Rhizosphere indole-3-acetic acid as a mediator in the Sorghum bicolor-phenanthrene-Sinorhizobium meliloti interactions.

We studied a model system consisting of Sorghum bicolor, phenanthrene, and an auxin-producing polycyclic aromatic hydrocarbon-degrading Sinorhizobium meliloti strain to clarify whether rhizosphere indole-3-acetic acid (IAA) takes part in the plant-pollutant-bacteria interactions. Phenanthrene and S. meliloti treatments of sorghum contributed to a decrease in the rhizosphere IAA concentration and to phytohormone accumulation, respectively. Regression analysis showed significant correlations between alteration in root-zone IAA content and alterations in the root-surface area, exudation, and rhizosphere effects for culturable heterotrophic bacteria, the S. meliloti strain, and other phenanthrene degraders. According to the data obtained, phenanthrene degraders get an advantage over nondegradative rhizobacteria from IAA for rhizosphere colonization. An IAA-dependent increase in the root-surface area leads to improved sorghum growth under pollutant stress. The carbon flux from the roots is corrected by the auxin because of its influence on the exuding-surface area and on the intensity of secretion by the root cells. On the other hand, the rhizosphere IAA pool may be plant-regulated by means of alteration in carboxylate exudation and its influence on bacterial auxin production. A scenario for the IAA-mediated S. bicolor-phenanthrene-S. meliloti interactions is proposed.