Molecular Characterization and Phylogenetic Analysis of a Variant Recombinant Porcine Epidemic Diarrhea Virus Strain in China.

Since 2010, a variant of porcine epidemic diarrhea virus (PEDV) has re-emerged in several provinces of China, resulting in severe economic losses for the pork industry. Here, we isolated and identified a variant PEDV strain, SC-YB73, in Guangdong Province, China. The pathological observations of jejunum showed atrophy of villi and edema in the lamina propria. The sequence analysis of the viral genome identified a six-nucleotide insertion in the E gene, which has not previously been detected in PEDV strains. Furthermore, 50 nucleotide sites were unique in SC-YB73 compared with 27 other PEDV strains. The phylogenetic analysis based on the complete genome showed that SC-YB73 was clustered in variant subgroup GII-a, which is widely prevalent in the Chinese pig population. The recombination analysis suggested that SC-YB73 originated from the recombination of GDS47, US PEDV prototype-like strains TW/Yunlin550/2018, and COL/Cundinamarca/2014. In the present study, we isolated and genetically characterized a variant PEDV strain, thus providing essential information for the control of PED outbreaks in China.

Molecular Characterization of a Novel Budgerigar Fledgling Disease Virus Strain From Budgerigars in China.

Budgerigar fledgling disease virus (BFDV) is the causative polyomavirus of budgerigar fledgling disease, an important avian immunosuppressive disease in budgerigars (Melopsittacus undulatus). In the current study, we explored the etiological role and molecular characteristics of BFDV. We identified a novel BFDV strain, designated as SC-YB19, belonging to a unique cluster with three other domestic strains (WF-GM01, SD18, and APV-P) and closely related to Polish isolates based on complete sequences. Sequence analysis showed that SC-YB19 had an 18-nucleotide (nt) deletion in the enhancer region, corresponding to the sequence position 164-181 nt, which differed significantly from all other BFDV strains. Based on sequence alignment, three unique nucleotide substitutions were found in VP4 (position 821), VP1 (position 2,383), and T-antigen (position 3,517) of SC-YB19, compared with SD18, WF-GM01, QDJM01, HBYM02, APV7, and BFDV1. Phylogenetic analyses based on complete sequences suggested that SC-YB19, along with the domestic WF-GM01, SD18, and APV-P strains, formed a single branch and were closely related to Polish, Japanese, and American isolates. These results demonstrate that BFDV genotype variations are co-circulating in China, thus providing important insight into BFDV evolution.

Kinetic study on the heterogeneous degradation of coniferyl alcohol by OH radicals.

Coniferyl alcohol derived from lignin pyrolysis, is a potential tracer for wood burning emissions, but its atmospheric stability toward OH radicals is not well known. In this work, the degradation kinetics of coniferyl alcohol by OH radicals was studied using a flow reactor at different OH concentrations, temperatures, and relative humidity (RH). The results showed that coniferyl alcohol could be degraded effectively by OH radials, and the average second-order rate constant (k2) was (11.6 ±â€¯0.5) × 10-12 cm3 molecule-1 s-1 at the temperature and RH of 25 °C and 40%, respectively. Additionally, increasing temperature facilitated the degradation of coniferyl alcohol and the Arrhenius equation could be expressed as k2 = (1.7 ±â€¯0.3) × 10-9exp [-(1480.2 ±â€¯55.6)/T] at 40% RH. Meanwhile, increasing RH had a negative impact on the degradation of coniferyl alcohol. According to the k2 obtained under different conditions, the atmospheric lifetime of coniferyl alcohol was in the range of 13.5 ±â€¯0.4 h to 22.9 ±â€¯1.4 h. The results suggested that the atmosphere lifetime of coniferyl alcohol was predominantly controlled by OH radicals.