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1.
J Biol Chem ; 293(7): 2260-2271, 2018 02 16.
Artigo em Inglês | MEDLINE | ID: mdl-29306874

RESUMO

The heme-containing enzyme myeloperoxidase (MPO) is critical for optimal antimicrobial activity of human neutrophils. We recently discovered that the bacterium Staphylococcus aureus expresses a novel immune evasion protein, called SPIN, that binds tightly to MPO, inhibits MPO activity, and contributes to bacterial survival following phagocytosis. A co-crystal structure of SPIN bound to MPO suggested that SPIN blocks substrate access to the catalytic heme by inserting an N-terminal ß-hairpin into the MPO active-site channel. Here, we describe a series of experiments that more completely define the structure/function relationships of SPIN. Whereas the SPIN N terminus adopts a ß-hairpin confirmation upon binding to MPO, the solution NMR studies presented here are consistent with this region of SPIN being dynamically structured in the unbound state. Curiously, whereas the N-terminal ß-hairpin of SPIN accounts for ∼55% of the buried surface area in the SPIN-MPO complex, its deletion did not significantly change the affinity of SPIN for MPO but did eliminate the ability of SPIN to inhibit MPO. The flexible nature of the SPIN N terminus rendered it susceptible to proteolytic degradation by a series of chymotrypsin-like proteases found within neutrophil granules, thereby abrogating SPIN activity. Degradation of SPIN was prevented by the S. aureus immune evasion protein Eap, which acts as a selective inhibitor of neutrophil serine proteases. Together, these studies provide insight into MPO inhibition by SPIN and suggest possible functional synergy between two distinct classes of S. aureus immune evasion proteins.


Assuntos
Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Peroxidase/química , Peroxidase/metabolismo , Infecções Estafilocócicas/enzimologia , Infecções Estafilocócicas/microbiologia , Staphylococcus aureus/metabolismo , Motivos de Aminoácidos , Proteínas de Bactérias/genética , Cristalografia por Raios X , Humanos , Espectroscopia de Ressonância Magnética , Peroxidase/genética , Ligação Proteica , Staphylococcus aureus/química , Staphylococcus aureus/genética
2.
Langmuir ; 31(10): 2946-55, 2015 Mar 17.
Artigo em Inglês | MEDLINE | ID: mdl-25719598

RESUMO

Branched amphiphilic peptide capsules (BAPCs) are biocompatible, bilayer delimited polycationic nanospheres that spontaneously form at room temperature through the coassembly of two amphiphilic branched peptides: bis(FLIVI)-K-K4 and bis(FLIVIGSII)-K-K4. BAPCs are readily taken up by cells in culture, where they escape and/or evade the endocytic pathway and accumulate in the perinuclear region, persisting there without apparent degradation or extravasation. Drugs, small proteins, and solutes as well as α particle emitting radionuclides are stably encapsulated for extended periods of time. BAPC formation at room temperature proceeds via a fusogenic process and after 48 h a range of BAPCs sizes are observed, from 50 nm to a few microns in diameter. It was previously reported that cooling BAPCs from 25 to 4 °C and then back to 25 °C eliminated their fusogenic property. In this report, biophysical techniques reveal that BAPCs undergo thermosensitive conformational transitions as a function of both time and temperature and that the properties of BAPCs vary based on the temperature of assembly. The solvent dissociation properties of BAPCs were studied as well as the contributions of specific amino acid residues to the observed conformations. The roles of the potential stabilizing forces present within the bilayer that bestow the unusal stability of the BAPCs are discussed. Ultimately this study presents revised assembly protocols for preparing BAPCs with discrete sizes and solvent-induced extravasation properties.


Assuntos
Interações Hidrofóbicas e Hidrofílicas , Peptídeos/química , Temperatura , Sequência de Aminoácidos , Cápsulas , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Estabilidade Proteica , Fatores de Tempo
4.
Biomol NMR Assign ; 17(1): 129-134, 2023 06.
Artigo em Inglês | MEDLINE | ID: mdl-37160842

RESUMO

The S. aureus extracellular adherence protein (Eap) and its homologs, EapH1 and EapH2, serve roles in evasion of the human innate immune system. EapH1 binds with high-affinity and inhibits the neutrophil azurophilic granule proteases neutrophil elastase, cathepsin-G and proteinase-3. Previous structural studies using X-ray crystallography have shown that EapH1 binds to neutrophil elastase and cathepsin-G using a globally similar binding mode. However, whether the same holds true in solution is unknown and whether the inhibitor experiences dynamic changes following binding remains uncertain. To facilitate solution-phase structural and biochemical studies of EapH1 and its complexes with neutrophil granule proteases, we have characterized EapH1 by multidimensional NMR spectroscopy. Here we report a total of 100% of the non-proline backbone resonance assignments of EapH1 with BMRB accession number 50,304.


Assuntos
Staphylococcus aureus Resistente à Meticilina , Inibidores de Serina Proteinase , Humanos , Inibidores de Serina Proteinase/química , Inibidores de Serina Proteinase/metabolismo , Neutrófilos/metabolismo , Elastase de Leucócito/metabolismo , Staphylococcus aureus/química , Staphylococcus aureus Resistente à Meticilina/metabolismo , Ressonância Magnética Nuclear Biomolecular
5.
Biophys J ; 103(5): 979-88, 2012 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-23009847

RESUMO

Peptide-based hydrogels are attractive biological materials. Study of their self-assembly pathways from their monomer structures is important not only for undertaking the rational design of peptide-based materials, but also for understanding their biological functions and the mechanism of many human diseases relative to protein aggregation. In this work, we have monitored the conformation, morphological, and mechanical properties of a hydrogel-forming peptide during hydrogelation in different dimethylsulfoxide (DMSO)/H(2)O solutions. The peptide shows nanofiber morphologies in DMSO/H(2)O solution with a ratio lower than 4:1. Increased water percentage in the solution enhanced the hydrogelation rate and gel strength. One-dimensional and two-dimensional proton NMR and electron microscopy studies performed on the peptide in DMSO/H(2)O solution with different ratios indicate that the peptide monomer tends to adopt a more helical structure during the hydrogelation as the DMSO/H(2)O ratio is reduced. Interestingly, at the same DMSO/H(2)O ratio, adding Ca(2+) not only promotes peptide hydrogelation and gel strength, but also leads to special shear-thinning and recovery properties of the hydrogel. Without changing the peptide conformation, Ca(2+) binds to the charged Asp residues and induces the change of interfiber interactions that play an important role in hydrogel properties.


Assuntos
Hidrogéis/química , Microscopia Eletrônica de Transmissão , Peptídeos/química , Fenômenos Físicos , Reologia , Sequência de Aminoácidos , Cálcio/química , Dimetil Sulfóxido/química , Espectroscopia de Ressonância Magnética , Modelos Moleculares , Dados de Sequência Molecular , Conformação Proteica , Água/química
6.
Insect Sci ; 29(5): 1309-1317, 2022 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-35020973

RESUMO

Infections by mosquito-borne diseases represent one of the leading causes of death in third world countries. The rapid progression of resistance to conventional insecticide causes a significant threat to the highly efficient preventive methods currently in place. Insect neuropeptidergic system offers potential targets to control the insect vectors. The essential roles of the neuropeptide ecdysis triggering hormone (ETH) in insect development and reproduction led us to attempt understanding of the fundamentals of the biochemical interaction between ETH and its receptor in the African malaria mosquito Anopheles gambiae. One of two ETH peptides of the African malaria mosquito (AgETH1), a small peptide hormone with 17 amino acid residues (SESPGFFIKLSKSVPRI-NH2 ), was studied to elucidate its molecular structure. N-termini deletions and mutations of conserved amino acids in the ligand revealed the critical residues for the receptor activation. The solution structure of AgETH1 using 2D 1 H-1 H nuclear magnetic resonance (NMR) spectroscopy and nuclear overhauser effect (NOE) derived constraints revealed a short alpha helix between residues 3S and 11S. The NMR solution structure of AgETH1 will be of significant assistance for designing a new class of insecticidal compounds that acts on the AgETH receptor aiming for in silico docking studies.


Assuntos
Anopheles , Inseticidas , Malária , Neuropeptídeos , Hormônios Peptídicos , Aminoácidos/farmacologia , Animais , Anopheles/genética , Hormônios/farmacologia , Insetos , Resistência a Inseticidas/genética , Inseticidas/farmacologia , Ligantes , Muda/genética , Controle de Mosquitos/métodos , Mosquitos Vetores/genética , Hormônios Peptídicos/farmacologia
7.
Biomol NMR Assign ; 15(1): 183-186, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33423171

RESUMO

The Extracellular Adherence Protein (Eap) from Staphylococcus aureus is a potent inhibitor of the classical and lectin pathways of the complement system. Previous studies have shown that Eap binds with nanomolar affinity to complement component C4b and prevents C4b binding the pro-protease, C2, thereby inhibiting formation of the pro-C3 convertase shared by the classical and lectin pathways (Woehl et al. in J Immunol 193:6161-6171, 2014). The C4b-binding and complement-inhibitory properties of Eap from S. aureus strain Mu50 lie within the two C terminal-most Eap domains (i.e. Eap34) (Woehl et al. J Immunol 193:6161-6171, 2014). Interestingly, Eap34 binds C4b with an apparent KD that is nearly 100-fold tighter than that of either Eap3 or Eap4 alone (Woehl et al. in Protein Sci 26:1595-1608, 2017). This suggests that linking these two domains into a single molecule is a significant determinant of Eap function. To better understand this property at the structural level, we undertook a solution NMR study of the ~ 23 kDa Eap34 protein. In this communication, we report that greater than 98% of the total non-proline backbone residues have been assigned. These data have been deposited in the BMRB database under the accession number 50210.


Assuntos
Ressonância Magnética Nuclear Biomolecular , Staphylococcus aureus , Staphylococcus aureus Resistente à Meticilina
8.
Proteins ; 78(10): 2238-50, 2010 Aug 01.
Artigo em Inglês | MEDLINE | ID: mdl-20544961

RESUMO

Synthetic channel-forming peptides that can restore chloride conductance across epithelial membranes could provide a novel treatment of channelopathies such as cystic fibrosis. Among a series of 22-residue peptides derived from the second transmembrane segment of the glycine receptor alpha(1)-subunit (M2GlyR), p22-S22W (KKKKP ARVGL GITTV LTMTT QW) is particularly promising with robust membrane insertion and assembly. The concentration to reach one-half maximal short circuit current is reduced to 45 +/- 6 microM from that of 210 +/- 70 microM of peptide p22 (KKKKP ARVGL GITTV LTMTT QS). However, this is accompanied with nearly 50% reduction in conductance. Toward obtaining a molecular level understanding of the channel activities, we combine information from solution NMR, existing biophysical data, and molecular modeling to construct atomistic models of the putative pentameric channels of p22 and p22-S22W. Simulations in membrane bilayers demonstrate that these structural models, even though highly flexible, are stable and remain adequately open for ion conductance. The membrane-anchoring tryptophan residues not only rigidify the whole channel, suggesting increased stability, but also lead to global changes in the pore profile. Specifically, the p22-S22W pore has a smaller opening on average, consistent with lower measured conductance. Direct observation of several incidences of chloride transport suggests several qualitative features of how these channels might selectively conduct anions. The current study thus helps to rationalize the functional consequences of introducing a single C-terminal tryptophan. Availability of these structural models also paves the way for future work to rationally modify and improve M2GlyR-derived peptides toward potential peptide-based channel replacement therapy.


Assuntos
Ânions/química , Transporte de Íons , Peptídeos/química , Triptofano/química , Canais de Cloreto , Cloretos , Biologia Computacional , Bases de Dados de Proteínas , Descoberta de Drogas , Técnicas Eletroquímicas , Cinética , Bicamadas Lipídicas/química , Micelas , Modelos Moleculares , Simulação de Dinâmica Molecular , Mimetismo Molecular , Ressonância Magnética Nuclear Biomolecular , Peptídeos/síntese química , Fosfatidilcolinas/química , Conformação Proteica , Receptores de Glicina/química
9.
J Nanosci Nanotechnol ; 10(12): 7981-7, 2010 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-21121287

RESUMO

Protein nanomaterials at the peptide level have shown great potential for medical applications. Peptides change their morphological conformation because of changes in self-assembly properties when they are exposed to changes in solvent composition or pH. Two 15-residue peptide sequences, KhK (KKKFLIVIGSIIKKK) and Alternating Kh (KFLKKIVKIGKKSII), were designed for the purpose of determining the role of peptide sequence on solution morphology and conformation. KhK solutions exhibited a random coil to helical transition when solvent conditions were changed from water to a trifluorethanol/water solution at acidic pH. Alternating Kh solutions, however, demonstrated primarily random coil character under similar solvent and pH conditions as determined by circular dichroism spectroscopy and 2D-1H-1H nuclear magnetic resonance spectroscopy. At basic pH, circular dichroism spectroscopy and nuclear magnetic resonance spectroscopy analysis demonstrated that random coil character increased at basic pH for KhK, whereas Alternating Kh exhibited an increase in beta-sheet character. Further analysis by transmission electron microscopy showed marked differences in the peptide solution morphology. Peptide particle aggregation and fiber formation were significantly affected by solvent composition and pH values for both peptide sequences.


Assuntos
Peptídeos/química , Sequência de Aminoácidos , Dicroísmo Circular , Concentração de Íons de Hidrogênio , Microscopia Eletrônica de Transmissão , Modelos Químicos , Dados de Sequência Molecular , Nanoestruturas , Ressonância Magnética Nuclear Biomolecular , Conformação Proteica
10.
J Matern Fetal Neonatal Med ; 33(20): 3469-3475, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-30741044

RESUMO

Objective: To analyze placental vascular resistance and the role of placental insufficiency in the etiology of reduced fetal growth in fetuses with trisomy 21 as determined by umbilical artery (UA) Doppler velocimetry.Methods: Second- and third-trimester UA Doppler ultrasound studies were performed in fetuses with trisomy 21 at the time of clinically indicated obstetric ultrasound assessment. The UA pulsatility index (PI) and half-peak systolic velocity deceleration time (hPSV-DT) were measured and recorded. Perinatal outcome was reviewed and the results from UA Doppler velocimetry were compared with birthweight according to gestational age at the time of the delivery.Results: A total of 60 fetuses with trisomy 21 were studied and information from 147 UA Doppler studies was analyzed. Overall, at least one of the UA PI and hPSV-DT values was abnormal in 82% (n = 49) and 90% (n = 54) of the cases, respectively. The incidence of abnormal UA PI values increased with gestational age from 39% (7/18) before 21 weeks to 78% (18/23) after 35 weeks (p < .05). The increase was even more evident for UA hPSV-DT values from 28% (5/18) before 20 weeks to 91% (21/23) after 35 weeks (p < .01). After exclusion of four fetuses with hydrops or isolated hydrothorax/ascites, 16 (29%) were classified at birth as small for gestational age (SGA), 34 (61%) as adequate for gestational age, and six (11%) as large for gestational age, with a mean birthweight z-score of -0.36. When only considering the last Doppler ultrasound assessment prior to delivery, UA PI and hPSV-DT values were abnormal in 73% (41/56, mean z-score = +1.72) and 82% (46/56; mean z-score = -2.18) of the cases, respectively. Mean gestational age at delivery and birth weight were significantly lower in the group with abnormal compared to normal UA PI and hPSV-DT values. Similarly, the incidence of SGA fetuses was significantly higher in the group with abnormal compared to normal UA PI and hPSV-DT values, with 94 (n = 15) and 100% of the 16 SGA newborn infants having abnormal UA PI and hPSV-DT values prior to delivery, respectively.Conclusions: Trisomy 21 fetuses have a progressively higher incidence of abnormal UA impedance indices throughout pregnancy, which suggests developing placental vascular resistance as the pregnancy progresses. This alteration likely begins around the mid second trimester and increases with gestational age; however, increasing placental vascular resistance seems to produce a discrete decrease in fetal growth, despite severe alteration of the UA Doppler impedance indices. As a general hypothesis, we postulate that trisomy 21 fetuses have increasing placental vascular resistance but there may be some factors that protect these fetuses from severe fetal growth restriction.


Assuntos
Síndrome de Down , Artérias Umbilicais , Velocidade do Fluxo Sanguíneo , Desaceleração , Síndrome de Down/diagnóstico por imagem , Feminino , Retardo do Crescimento Fetal , Feto , Idade Gestacional , Humanos , Lactente , Recém-Nascido , Placenta , Gravidez , Ultrassonografia Doppler , Ultrassonografia Pré-Natal , Artérias Umbilicais/diagnóstico por imagem
11.
PLoS One ; 15(6): e0234468, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32530958

RESUMO

Flavonoids are plant-derived compounds that occur abundantly in fruits and vegetables and have been shown to possess potent anti-cancer, antioxidant, and anti-inflammatory properties. However, their direct targets and molecular mechanism of action are not well characterized, hampering exploitation of the beneficial properties of flavonoids for drug development. Small ubiquitin-related modifier 1 (SUMO1) is attached to target proteins as part of a post-translational modification system implicated in a myriad of cellular processes from nuclear trafficking to transcriptional regulation. Using a combination of surface plasmon resonance, differential scanning fluorimetry and fluorescence quenching studies, we provide evidence for direct binding of the dietary flavonoid fisetin to human SUMO1. Our NMR chemical shift perturbation analyses reveal that binding to fisetin involves four conserved amino acid residues (L65, F66, E67, M82) previously shown to be important for conjugation of SUMO1 to target proteins. In vitro sumoylation experiments indicate that fisetin blocks sumoylation of tumor suppressor p53, consistent with fisetin negatively affecting post-translational modification and thus the biological activity of p53. A series of differential scanning fluorimetry experiments suggest that high concentrations of fisetin result in destabilization and unfolding of SUMO1, presenting a molecular mechanism by which flavonoid binding affects its activity. Overall, our data establish a novel direct interaction between fisetin and SUMO1, providing a mechanistic explanation for the ability of fisetin to modulate multiple key signaling pathways inside cells.


Assuntos
Flavonoides/metabolismo , Flavonoides/farmacologia , Proteína SUMO-1/metabolismo , Proteína Supressora de Tumor p53/metabolismo , Dieta , Flavonóis , Humanos , Ligação Proteica , Saccharomyces cerevisiae , Sumoilação/efeitos dos fármacos
12.
Biomol NMR Assign ; 13(1): 219-222, 2019 04.
Artigo em Inglês | MEDLINE | ID: mdl-30729401

RESUMO

Staphylococcus aureus is a ubiquitous and persistent pathogen of humans and livestock. The bacterium disrupts the host's innate immune system's ability to recognize and clear bacteria with optimal efficiency by expressing a wide variety of virulence proteins. Two single domain protein homologs (EapH1, EapH2) of the extracellular adherence protein (Eap) have been reported. Eap is a multidomain protein that participates in various protein-protein interactions that inhibit the innate immune response, including both the complement and Neutrophil Serine Proteases (NSPs). EapH1 and EapH2 are also inhibitors of NSPs (Stapels et al., Proc Natl Acad Sci 111:13187-13192, 2014), but lack the ability to inhibit the classical, and lectin pathways of the complement activation system (Woehl et al., J Immunol 193:6161-6171, 2014). We continue the characterization of Eap domains, here with the experiments on EapH2, we acquired a series of 2D and 3D NMR spectra of EapH2 in solution. We completed 99% of expected non-proline backbone 1H, 15N, and 13C resonance assignments of EapH2 and predicted secondary structure via the TALOS-N server. The assignment data have been deposited in the BMRB data bank under Accession Number 27540.


Assuntos
Proteínas de Bactérias/química , Evasão da Resposta Imune , Imunidade Inata , Ressonância Magnética Nuclear Biomolecular , Staphylococcus aureus/química , Staphylococcus aureus/imunologia , Estrutura Secundária de Proteína
13.
Biomol NMR Assign ; 12(1): 175-178, 2018 04.
Artigo em Inglês | MEDLINE | ID: mdl-29372458

RESUMO

Staphylococcus aureus is a widespread and persistent pathogen of humans and livestock. The bacterium expresses a wide variety of virulence proteins, many of which serve to disrupt the host's innate immune system from recognizing and clearing bacteria with optimal efficiency. The extracellular adherence protein (Eap) is a multidomain protein that participates in various protein-protein interactions that inhibit the innate immune response, including both the complement system (Woehl et al in J Immunol 193:6161-6171, 2014) and Neutrophil Serine Proteases (NSPs) (Stapels et al in Proc Natl Acad Sci USA 111:13187-13192, 2014). The third domain of Eap, Eap3, is an ~ 11 kDa protein that was recently shown to bind complement component C4b (Woehl et al in Protein Sci 26:1595-1608, 2017) and therefore play an essential role in inhibiting the classical and lectin pathways of complement (Woehl et al in J Immunol 193:6161-6171, 2014). Since structural characterization of Eap3 is still incomplete, we acquired a series of 2D and 3D NMR spectra of Eap3 in solution. Here we report the backbone and side-chain 1H, 15N, and 13C resonance assignments of Eap3 and its predicted secondary structure via the TALOS-N server. The assignment data have been deposited in the BMRB data bank under accession number 27087.


Assuntos
Proteínas de Bactérias/química , Evasão da Resposta Imune , Ressonância Magnética Nuclear Biomolecular , Proteínas de Ligação a RNA/química , Staphylococcus aureus/imunologia , Proteínas de Bactérias/metabolismo , Domínios Proteicos , Proteínas de Ligação a RNA/metabolismo
14.
Biomol NMR Assign ; 11(2): 285-288, 2017 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-28815423

RESUMO

The bacterium Staphylococcus aureus produces an array of anti-inflammatory molecules that prevent the innate immune system from recognizing it as a pathogen and clearing it from the host. In the acute phase of inflammation, our immune system relies on neutrophils to clear invading bacteria. Recently, novel classes of secreted proteins from S. aureus, including the Extracellular Adherence Protein (EAP) family (Stapels et al., Proc Natl Acad Sci USA 111:13187-13192, 2014) and the Staphylococcal Peroxidase Inhibitor (SPIN), (unpublished work) have been identified as highly selective inhibitors acting on Neutrophil Serine Proteases (NSPs) and myeloperoxidase (MPO) respectively. SPIN is a protein found only in Staphylococci, with no sequence homology to any known proteins. Solution NMR structural studies of SPIN are therefore expected to provide a deeper understanding of its interaction with MPO. In this study, we report the backbone and side-chain 1H, 15N, and 13C resonance assignments of SPIN. Furthermore, using the chemical shifts of these resonances, we predicted the secondary structure of SPIN in solution via the TALOS-N server. The assignment data has been deposited in the BMRB data bank under Accession No. 27069.


Assuntos
Proteínas de Bactérias/química , Inibidores Enzimáticos/química , Ressonância Magnética Nuclear Biomolecular , Peroxidase/antagonistas & inibidores , Staphylococcus aureus , Sequência de Aminoácidos , Proteínas de Bactérias/farmacologia , Inibidores Enzimáticos/farmacologia
15.
Protein Pept Lett ; 24(1): 3-11, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-27903232

RESUMO

Manduca sexta stress response peptide-2 (SRP2) is predicted to be a 25-residue peptide (FGVKDGKCPSGRVRRLGICVPDDDY), which may function as an insect cytokine to regulate immune responses. Produced as an inactive precursor, endogenous proSRP2 is probably converted to active SRP2 by limited proteolysis in response to invading pathogens, along with prophenoloxidase and pro-Spätzle activation. In addition to immunity, SRP2 may control head morphogenesis or other developmental processes in the lepidopteran insect. We have examined the profiles of SRP2 gene expression in terms of immune induction capacity, tissue specificity, and developmental changes. To gain insights into its functions, we chemically synthesized SRP2, injected the peptide solution into naïve larvae, and detected significant up-regulation of several antimicrobial peptide genes. We determined the 3D molecular structure in solution of SRP2 by two-dimensional 1H-1H NMR spectroscopy. SRP2 has an ordered structure, which is composed of two short ß-strands at regions R12 - R15 and I18 - V20, one type-I' ß-turn at region R15 - I18, and a half turn at region C8 - S10 in its welldefined core stabilized by a covalent disulfide bond between C8 and C19. The secondary and tertiary structures are further stabilized by hydrogen bonds. Possible relationships between the structure and function are also discussed.


Assuntos
Citocinas/química , Citocinas/metabolismo , Manduca/imunologia , Peptídeos/química , Peptídeos/metabolismo , Sequência de Aminoácidos , Animais , Citocinas/genética , Regulação da Expressão Gênica , Ligação de Hidrogênio , Imunidade Inata , Proteínas de Insetos/genética , Proteínas de Insetos/metabolismo , Manduca/genética , Modelos Moleculares , Família Multigênica , Especificidade de Órgãos , Peptídeos/genética , Estrutura Secundária de Proteína , Estrutura Terciária de Proteína , Espectroscopia de Prótons por Ressonância Magnética , Homologia de Sequência de Aminoácidos
16.
Curr Protein Pept Sci ; 17(8): 827-841, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-27226195

RESUMO

Membrane interacting peptides of natural or synthetic origins serve a variety of biological purposes. They have been extensively studied for their involvement in immunity, diseases, and for their potential as medical therapeutics and research tools. In this review membrane interacting peptides are categorized into four groups according to their function: antimicrobial peptides, cell-penetrating peptides, channel forming peptides and amyloid peptides. A historical overview of the development, their functional mechanisms, and recent advances are presented for each of the groups. Considerable research is still devoted to this field of study and in this report a representative sample of the latest studies is presented. A set of common features among peptide groups emerges as the understanding of their action mechanisms increase. The possibility of a membrane centric general model for peptide-membrane interaction is also discussed. This review seeks to provide a unifying view of the field and promote the interaction between research groups working on peptides that have so far been studied as belonging to completely different fields.


Assuntos
Membrana Celular/química , Modelos Moleculares , Peptídeos/química , Conformação Proteica , Amiloide/química , Amiloide/metabolismo , Peptídeos Catiônicos Antimicrobianos/química , Peptídeos Catiônicos Antimicrobianos/metabolismo , Membrana Celular/metabolismo , Peptídeos Penetradores de Células/química , Peptídeos Penetradores de Células/metabolismo , Humanos , Canais Iônicos/química , Canais Iônicos/metabolismo , Peptídeos/metabolismo , Ligação Proteica
17.
Biomol NMR Assign ; 10(2): 301-5, 2016 10.
Artigo em Inglês | MEDLINE | ID: mdl-27372920

RESUMO

The pathogenic bacterium Staphylococcus aureus has evolved to actively evade many aspects of the human innate immune system by expressing a series of secreted inhibitory proteins. Among these, the extracellular adherence protein (Eap) has been shown to inhibit the classical and lectin pathways of the complement system. By binding to complement component C4b, Eap is able to inhibit formation of the CP/LP C3 pro-convertase. Secreted full-length, mature Eap consists of four ~98 residue domains, all of which adopt a similar beta-grasp fold, and are connected through a short linker region. Through multiple biochemical approaches, it has been determined that the third and fourth domains of Eap are responsible for C4b binding. Here we report the backbone and side-chain resonance assignments of the 11.3 kDa fourth domain of Eap. The assignment data has been deposited in the BMRB database under the accession number 26726.


Assuntos
Proteínas de Bactérias/química , Ressonância Magnética Nuclear Biomolecular , Proteínas de Ligação a RNA/química , Staphylococcus aureus , Domínios Proteicos
18.
Nat Prod Commun ; 10(1): 201-8, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25920245

RESUMO

Lignin provides structural support, a mechanical barrier against microbial infestation and facilitates movement of water inside plant systems. It is the second most abundant natural polymer in the terrestrial environments and possesses unique routes for the production of bulk and specialty chemicals with aromatic/phenolic skeletons. The commercial applications of lignin are limited and it is often recognized for its negative impact on the biochemical conversion of lignocellulosic biomass to fuels and chemicals. Understanding of the structure of lignin monomers and their interactions among themselves, as well as with carbohydrate polymers in biomass, is vital for the development of innovative biomass deconstruction processes and thereby valorization of all biopolymers of lignocellulosic residues, including lignin. In this paper, we review the major energy crops and their lignin structure, as well as the recent developments in biomass lignin characterization, with special focus on 1D and 2D Nuclear Magnetic Resonance (NMR) techniques.


Assuntos
Biocombustíveis , Produtos Agrícolas/química , Lignina/química , Biomassa , Produtos Agrícolas/metabolismo , Lignina/biossíntese
19.
Rev. colomb. cardiol ; 27(5): 388-393, sep.-oct. 2020. tab, graf
Artigo em Espanhol | LILACS, COLNAL | ID: biblio-1289247

RESUMO

Resumen Introducción: El ángulo QRS-T espacial es la diferencia entre el vector del QRS y la T. Se conoce el valor diagnóstico y pronóstico de este marcador en enfermedades cardíacas. Es prioritario determinar si estas mediciones son reproducibles con confiabilidad en nuestro medio. Métodos: En 30 adultos se obtuvieron electrocardiogramas, independientemente del diagnóstico. Las mediciones las realizaron dos estudiantes de Medicina de quinto año, un médico interno y un cardiólogo, posterior a un reentrenamiento sobre la medición del ángulo por el método de transformación visual. Con identificación cegada, ingresaron en un aplicativo web las mediciones del QRS y la T. El ángulo fue estimado a partir de la plantilla de Cortez y colaboradores. Sobre el 20% de las lecturas se estimó un acuerdo intraobservador y en el 100% de las lecturas un acuerdo interobservador. Los puntos de corte para estimar el acuerdo Kappa fueron < 105s (normal), 105° a 135° (limítrofe) y > 135° (anormal). Resultados: Se excluyó un ECG por calidad deficiente. El rango del ángulo estuvo entre 72.9° y 176.2°. El acuerdo interobservador entre los 4 evaluadores fue kappa = 0.786 (IC95% 0.728-0.823, p < 0.0001) y el intraobservador kappa = 1.0 (p 0.007). Conclusión: Es el primer estudio sobre el ángulo QRS-T espacial realizado en Colombia. Se logró un acuerdo inter- e intraobservador adecuado en la medición del ángulo por el método de transformación visual, en observadores con diferente experticia, con un kappa mayor de 0,75. Este resultado apoya la reproducibilidad de esta medición en estudios posteriores en Colombia.


Abstract Introduction: The spatial QRS-T angle is the difference between the QRS vector and T vector. The diagnostic and prognostic value of this marker in heart disease is well-known. It is essential to determine whether these measurements are reproducible and reliable in Colombia. Methods: Electrocardiograms (ECG) were obtained from 30 adults, regardless of the diagnosis. The measurements were made by two fifth-year medical students, a houseman/ intern, and a cardiologist. They were all re-trained on the measurement of the angle using the visual transformation method. With blinded identification, they entered the QRS and T measurements into a web application. The angle was estimated from the template of Cortez et al. About 20% of the readers showed an intra-observer agreement and an inter-observer agreement in 100%. The cut-off points to estimate the agreement Kappa were < 105° (normal), 105° a 135° (borderline), and >135° (abnormal). Results: One ECG was excluded due to poor quality. The range of the angle was between 72.9° and 176.2°. The inter-observer agreement between the 4 evaluators gave a kappa = 0.786 (95% CI; 0.728-0.823, P < .0001), and the intra-observer agreement a kappa = 1.0 (P = .007). Conclusion: This the first study on the spatial QRS-T angle performed in Colombia. A good inter- and intra-observer agreement was achieved in the measurement of the angle by the visual transformation method by observers with different levels of expertise, with a Kappa greater than 0.75. These results support the reproducibility of this measurement in subsequent studies in Colombia.


Assuntos
Humanos , Adulto , Reprodutibilidade dos Testes , Vetorcardiografia , Eletrocardiografia
20.
Psicothema ; 25(1): 123-9, 2013 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-23336554

RESUMO

BACKGROUND: Experiential avoidance and psychological inflexibility have been recently found to be important constructs related to a wide range of psychological disorders and quality of life. The current study presents psychometric and factor structure data concerning the Spanish translation of a general measure of both constructs: the Acceptance and Action Questionnaire - II (AAQ-II). METHOD: Six samples, with a total of 712 participants, from several independent studies were analyzed. RESULTS: Data were very similar to the ones obtained in the original AAQ-II version. The internal consistency across the different samples was good (between a= .75 and a= .93). The differences between clinical and nonclinical samples were statistically significant and the overall factor analysis yielded to a one-factor solution. The AAQ-II scores were significantly related to general psychopathology and quality of life measures. CONCLUSIONS: This Spanish translation of the AAQ-II emerges as a reliable and valid measure of experiential avoidance and psychological inflexibility.


Assuntos
Processos Mentais , Inquéritos e Questionários , Adulto , Feminino , Humanos , Masculino , Pessoa de Meia-Idade , Traduções , Adulto Jovem
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