Pesquisa | BVS Violência e Saúde

1.

Characterization of Alternative Splicing in High-Risk Wilms' Tumors.

Trink, Yaron; Urbach, Achia; Dekel, Benjamin; Hohenstein, Peter; Goldberger, Jacob; Kalisky, Tomer.

Int J Mol Sci ; 25(8)2024 Apr 20.

Artigo em Inglês | MEDLINE | ID: mdl-38674106

2.

Characterization of Continuous Transcriptional Heterogeneity in High-Risk Blastemal-Type Wilms' Tumors Using Unsupervised Machine Learning.

Trink, Yaron; Urbach, Achia; Dekel, Benjamin; Hohenstein, Peter; Goldberger, Jacob; Kalisky, Tomer.

Int J Mol Sci ; 24(4)2023 Feb 09.

Artigo em Inglês | MEDLINE | ID: mdl-36834944

3.

Chromatin occupancy and epigenetic analysis reveal new insights into the function of the GATA1 N terminus in erythropoiesis.

Ling, Te; Birger, Yehudit; Stankiewicz, Monika J; Ben-Haim, Nissim; Kalisky, Tomer; Rein, Avigail; Kugler, Eitan; Chen, Wei; Fu, Chunling; Zhang, Kevin; Patel, Hiral; Sikora, Jacek W; Goo, Young Ah; Kelleher, Neil; Zou, Lihua; Izraeli, Shai; Crispino, John D.

Blood ; 134(19): 1619-1631, 2019 11 07.

Artigo em Inglês | MEDLINE | ID: mdl-31409672

4.

Single-Cell RNA Sequencing Reveals mRNA Splice Isoform Switching during Kidney Development.

Wineberg, Yishay; Bar-Lev, Tali Hana; Futorian, Anna; Ben-Haim, Nissim; Armon, Leah; Ickowicz, Debby; Oriel, Sarit; Bucris, Efrat; Yehuda, Yishai; Pode-Shakked, Naomi; Gilad, Shlomit; Benjamin, Sima; Hohenstein, Peter; Dekel, Benjamin; Urbach, Achia; Kalisky, Tomer.

J Am Soc Nephrol ; 31(10): 2278-2291, 2020 10.

Artigo em Inglês | MEDLINE | ID: mdl-32651222

5.

A cluster robustness score for identifying cell subpopulations in single cell gene expression datasets from heterogeneous tissues and tumors.

Kanter, Itamar; Dalerba, Piero; Kalisky, Tomer.

Bioinformatics ; 35(6): 962-971, 2019 03 15.

Artigo em Inglês | MEDLINE | ID: mdl-30165506

6.

CDX2 as a Prognostic Biomarker in Stage II and Stage III Colon Cancer.

Dalerba, Piero; Sahoo, Debashis; Paik, Soonmyung; Guo, Xiangqian; Yothers, Greg; Song, Nan; Wilcox-Fogel, Nate; Forgó, Erna; Rajendran, Pradeep S; Miranda, Stephen P; Hisamori, Shigeo; Hutchison, Jacqueline; Kalisky, Tomer; Qian, Dalong; Wolmark, Norman; Fisher, George A; van de Rijn, Matt; Clarke, Michael F.

N Engl J Med ; 374(3): 211-22, 2016 Jan 21.

Artigo em Inglês | MEDLINE | ID: mdl-26789870

7.

Genomic analysis at the single-cell level.

Kalisky, Tomer; Blainey, Paul; Quake, Stephen R.

Annu Rev Genet ; 45: 431-45, 2011.

Artigo em Inglês | MEDLINE | ID: mdl-21942365

8.

Quantitative assessment of single-cell RNA-sequencing methods.

Wu, Angela R; Neff, Norma F; Kalisky, Tomer; Dalerba, Piero; Treutlein, Barbara; Rothenberg, Michael E; Mburu, Francis M; Mantalas, Gary L; Sim, Sopheak; Clarke, Michael F; Quake, Stephen R.

Nat Methods ; 11(1): 41-6, 2014 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-24141493

9.

KIT Signaling Promotes Growth of Colon Xenograft Tumors in Mice and Is Up-Regulated in a Subset of Human Colon Cancers.

Chen, Evan C; Karl, Taylor A; Kalisky, Tomer; Gupta, Santosh K; O'Brien, Catherine A; Longacre, Teri A; van de Rijn, Matt; Quake, Stephen R; Clarke, Michael F; Rothenberg, Michael E.

Gastroenterology ; 149(3): 705-17.e2, 2015 Sep.

Artigo em Inglês | MEDLINE | ID: mdl-26026391

10.

Geometry of the Gene Expression Space of Individual Cells.

Korem, Yael; Szekely, Pablo; Hart, Yuval; Sheftel, Hila; Hausser, Jean; Mayo, Avi; Rothenberg, Michael E; Kalisky, Tomer; Alon, Uri.

PLoS Comput Biol ; 11(7): e1004224, 2015 Jul.

Artigo em Inglês | MEDLINE | ID: mdl-26161936

11.

Association of reactive oxygen species levels and radioresistance in cancer stem cells.

Diehn, Maximilian; Cho, Robert W; Lobo, Neethan A; Kalisky, Tomer; Dorie, Mary Jo; Kulp, Angela N; Qian, Dalong; Lam, Jessica S; Ailles, Laurie E; Wong, Manzhi; Joshua, Benzion; Kaplan, Michael J; Wapnir, Irene; Dirbas, Frederick M; Somlo, George; Garberoglio, Carlos; Paz, Benjamin; Shen, Jeannie; Lau, Sean K; Quake, Stephen R; Brown, J Martin; Weissman, Irving L; Clarke, Michael F.

Nature ; 458(7239): 780-3, 2009 Apr 09.

Artigo em Inglês | MEDLINE | ID: mdl-19194462

12.

Innate immune response to homologous rotavirus infection in the small intestinal villous epithelium at single-cell resolution.

Sen, Adrish; Rothenberg, Michael E; Mukherjee, Gourab; Feng, Ningguo; Kalisky, Tomer; Nair, Nitya; Johnstone, Iain M; Clarke, Michael F; Greenberg, Harry B.

Proc Natl Acad Sci U S A ; 109(50): 20667-72, 2012 Dec 11.

Artigo em Inglês | MEDLINE | ID: mdl-23188796

13.

Single-cell genomics.

Kalisky, Tomer; Quake, Stephen R.

Nat Methods ; 8(4): 311-4, 2011 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-21451520

14.

Identification of a cKit(+) colonic crypt base secretory cell that supports Lgr5(+) stem cells in mice.

Rothenberg, Michael E; Nusse, Ysbrand; Kalisky, Tomer; Lee, John J; Dalerba, Piero; Scheeren, Ferenc; Lobo, Neethan; Kulkarni, Subhash; Sim, Sopheak; Qian, Dalong; Beachy, Philip A; Pasricha, Pankaj J; Quake, Stephen R; Clarke, Michael F.

Gastroenterology ; 142(5): 1195-1205.e6, 2012 May.

Artigo em Inglês | MEDLINE | ID: mdl-22333952

15.

OCT4 induces long-lived dedifferentiated kidney progenitors poised to redifferentiate in 3D kidney spheroids.

Omer, Dorit; Zontag, Osnat Cohen; Gnatek, Yehudit; Harari-Steinberg, Orit; Pleniceanu, Oren; Namestnikov, Michael; Cohen, Ayelet-Hashahar; Nissim-Rafinia, Malka; Tam, Gal; Kalisky, Tomer; Meshorer, Eran; Dekel, Benjamin.

Mol Ther Methods Clin Dev ; 29: 329-346, 2023 Jun 08.

Artigo em Inglês | MEDLINE | ID: mdl-37214315

16.

Characterization of alternative mRNA splicing in cultured cell populations representing progressive stages of human fetal kidney development.

Wineberg, Yishay; Kanter, Itamar; Ben-Haim, Nissim; Pode-Shakked, Naomi; Bucris, Efrat; Bar-Lev, Tali Hana; Oriel, Sarit; Reinus, Harel; Yehuda, Yishai; Gershon, Rotem; Shukrun, Rachel; Bar-Lev, Dekel Dov; Urbach, Achia; Dekel, Benjamin; Kalisky, Tomer.

Sci Rep ; 12(1): 19548, 2022 11 15.

Artigo em Inglês | MEDLINE | ID: mdl-36380228

17.

Applications of Community Detection Algorithms to Large Biological Datasets.

Kanter, Itamar; Yaari, Gur; Kalisky, Tomer.

Methods Mol Biol ; 2243: 59-80, 2021.

Artigo em Inglês | MEDLINE | ID: mdl-33606252

18.

An analytically solvable model for rapid evolution of modular structure.

Kashtan, Nadav; Mayo, Avi E; Kalisky, Tomer; Alon, Uri.

PLoS Comput Biol ; 5(4): e1000355, 2009 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-19360090

19.

Human kidney clonal proliferation disclose lineage-restricted precursor characteristics.

Cohen-Zontag, Osnat; Gershon, Rotem; Harari-Steinberg, Orit; Kanter, Itamar; Omer, Dorit; Pleniceanu, Oren; Tam, Gal; Oriel, Sarit; Ben-Hur, Herzel; Katz, Guy; Dotan, Zohar; Kalisky, Tomer; Dekel, Benjamin; Pode-Shakked, Naomi.

Sci Rep ; 10(1): 22097, 2020 12 16.

Artigo em Inglês | MEDLINE | ID: mdl-33328501

20.

Ex Vivo Expanded 3D Human Kidney Spheres Engraft Long Term and Repair Chronic Renal Injury in Mice.

Harari-Steinberg, Orit; Omer, Dorit; Gnatek, Yehudit; Pleniceanu, Oren; Goldberg, Sanja; Cohen-Zontag, Osnat; Pri-Chen, Sara; Kanter, Itamar; Ben Haim, Nissim; Becker, Eli; Ankawa, Roi; Fuchs, Yaron; Kalisky, Tomer; Dotan, Zohar; Dekel, Benjamin.

Cell Rep ; 30(3): 852-869.e4, 2020 01 21.

Artigo em Inglês | MEDLINE | ID: mdl-31968258

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