Induction of Laccase, Lignin Peroxidase and Manganese Peroxidase Activities in White-Rot Fungi Using Copper Complexes.

Ligninolytic enzymes, such as laccase, lignin peroxidase and manganese peroxidase, are biotechnologically-important enzymes. The ability of five white-rot fungal strains Daedaleopsis confragosa, Fomes fomentarius, Trametes gibbosa, Trametes suaveolens and Trametes versicolor to produce these enzymes has been studied. Three different copper(II) complexes have been prepared ((Him)[Cu(im)4(H2O)2](btc)·3H2O, where im = imidazole, H3btc = 1,3,5-benzenetricarboxylic acid, [Cu3(pmdien)3(btc)](ClO4)3·6H2O) and [Cu3(mdpta)3(btc)](ClO4)3·4H2O, where pmdien = N,N,N',N'',N''-pentamethyl-diethylenetriamine and mdpta = N,N-bis-(3-aminopropyl)methyl- amine), and their potential application for laccase and peroxidases induction have been tested. The enzyme-inducing activities of the complexes were compared with that of copper sulfate, and it has been found that all of the complexes are suitable for the induction of laccase and peroxidase activities in white-rot fungi; however, the newly-synthesized complex M1 showed the greatest potential for the induction. With respect to the different copper inducers, this parameter seems to be important for enzyme activity, which depends also on the fungal strains.

Biological Activity and Molecular Structures of Bis(benzimidazole) and Trithiocyanurate Complexes.

1-(1H-Benzimidazol-2-yl)-N-(1H-benzimidazol-2-ylmethyl)methanamine (abb) and 2-(1H-benzimidazol-2-ylmethylsulfanylmethyl)-1H-benzimidazole (tbb) have been prepared and characterized by elemental analysis. These bis(benzimidazoles) have been further used in combination with trithiocyanuric acid for the preparation of complexes. The crystal and molecular structures of two of them have been solved. Each nickel atom in the structure of trinuclear complex [Ni3(abb)3(H2O)3(µ-ttc)](ClO4)3·3H2O·EtOH (1), where ttcH3 = trithiocyanuric acid, is coordinated with three N atoms of abb, the N,S donor set of ttc anion and an oxygen of a water molecule. The crystal of [(tbbH2)(ttcH2)2(ttcH3)(H2O)] (2) is composed of a protonated bis(benzimidazole), two ttcH2 anions, ttcH3 and water. The structure is stabilized by a network of hydrogen bonds. These compounds were primarily synthesized for their potential antimicrobial activity and hence their possible use in the treatment of infections caused by bacteria or yeasts (fungi). The antimicrobial and antifungal activity of the prepared compounds have been evaluated on a wide spectrum of bacterial and yeast strains and clinical specimens isolated from patients with infectious wounds and the best antimicrobial properties were observed in strains after the use of ligand abb and complex 1, when at least 80% growth inhibition was achieved.

Trithiocyanurate complexes of iron, manganese and nickel and their anticholinesterase activity.

The complexes of Fe(II), Mn(II) and Ni(II) with a combination of a Schiff base, nitrogen-donor ligand or macrocyclic ligand and trithiocyanuric acid (ttcH3) were prepared and characterized by elemental analysis and spectroscopies. Crystal and molecular structures of the iron complex of composition [Fe(L1)](ttcH2)(ClO4)·EtOH·H2O (1), where L1 is Schiff base derived from tris(2-aminoethyl)amine and 2-pyridinecarboxaldehyde, were solved. It was found that the Schiff base is coordinated to the central iron atom by six nitrogens forming deformed octahedral arrangement, whereas trithiocyanurate(1-) anion, perchlorate and solvent molecules are not coordinated. The X-ray structure of the Schiff base sodium salt is also presented and compared with the iron complex. The anticholinesterase activity of the complexes was also studied.

Reaction of selected carbohydrate aldehydes with benzylmagnesium halides: benzyl versus o-tolyl rearrangement.

The Grignard reaction of 2,3-O-isopropylidene-α-D-lyxo-pentodialdo-1,4-furanoside and benzylmagnesium chloride (or bromide) afforded a non-separable mixture of diastereomeric benzyl carbinols and diastereomeric o-tolyl carbinols. The latter resulted from an unexpected benzyl to o-tolyl rearrangement. The proportion of benzyl versus o-tolyl derivatives depended on the reaction conditions. Benzylmagnesium chloride afforded predominantly o-tolyl carbinols while the application of benzylmagnesium bromide led preferably to the o-tolyl carbinols only when used in excess or at higher temperatures. The structures of the benzyl and o-tolyl derivatives were confirmed unambiguously by NMR spectral data and X-ray crystallographic analysis of their 5-ketone analogues obtained by oxidation of the corresponding mixture of diastereomeric carbinols. A possible mechanism for the Grignard reaction leading to the benzyl→o-tolyl rearrangement is also proposed.

Mechanistic dichotomy in the asymmetric allylation of aldehydes with allyltrichlorosilanes catalyzed by chiral pyridine N-oxides.

Detailed kinetic and computational investigation of the enantio- and diastereoselective allylation of aldehydes 1 with allyltrichlorosilanes 5, employing the pyridine N-oxides METHOX (9) and QUINOX (10) as chiral organocatalysts, indicate that the reaction can proceed through a dissociative (cationic) or associative (neutral) mechanism: METHOX apparently favors a pentacoordinate cationic transition state, while the less sterically demanding QUINOX is likely to operate via a hexacoordinate neutral complex. In both pathways, only one molecule of the catalyst is involved in the rate- and selectivity-determining step, which is supported by both experimental and computational data.

Effects of different substituents on the crystal structures and antimicrobial activities of six Ag(I) quinoline compounds.

The syntheses and single crystal X-ray structures of [Ag(5-nitroquinoline)2]NO3 (1), [Ag(8-nitroquinoline)2]NO3·H2O (2), [Ag(6-methoxy-8-nitroquinoline)(NO3)]n (3), [Ag(3-quinolinecarbonitrile)(NO3)]n (4), [Ag(3-quinolinecarbonitrile)2]NO3 (5), and [Ag(6-quinolinecarboxylic acid)2]NO3 (6) are described. As an alternative to solution chemistry, solid-state grinding could be used to prepare compounds 1 and 3, but the preparation of 4 and 5 in this way failed. The Ag(I) ions in the monomeric compounds 1, 2, 5, and 6 are coordinated to two ligands via the nitrogen atoms of the quinoline rings, thereby forming a distorted linear coordination geometry with Ag-N bond distances of 2.142(2)-2.336(2) Å and N-Ag-N bond angles of 163.62(13)°-172.25(13)°. The 1D coordination polymers 3 and 4 contain Ag(I) centers coordinating one ligand and two bridging nitrate groups, thereby forming a distorted trigonal planar coordination geometry with Ag-N bond distances of 2.2700(14) and 2.224(5) Å, Ag-O bond distances of 2.261(4)-2.536(5) Å, and N-Ag-O bond angles of 115.23(5)°-155.56(5)°. Hirshfeld surface analyses of compounds 1-6 are presented as d(norm) and curvedness maps. The d(norm) maps show different interaction sites around the Ag(I) ions, i.e., Ag···Ag interactions and possible O-H···O, C-H···O, C-H···N, and C-H···C hydrogen bonds. Curvedness maps are a good way of visualizing π-π stacking interactions between molecules. The antimicrobial activities of compounds 1, 2, and 6 were screened against 15 different multidrug-resistant strains of bacteria isolated from diabetic foot ulcers and compared to the antimicrobial activities of the clinically used silver sulfadiazine (SS). Compound 2 showed activity similar to SS against this set of test organisms, being active against all strains and having slightly better average silver efficiency than SS (5 vs 6 µg Ag/mL). Against the standard nonresistant bacterial strains of Staphylococcus aureus , Pseudomonas aeruginosa , Proteus mirabilis , and Streptococcus pyogenes , compound 1 performed better than silver nitrate, with an average MIC of 6 µg Ag/mL versus 18 µg Ag/mL for the reference AgNO3. Electrospray ionization mass spectrometry (ESI-MS) analyses of compounds 3 and 6 in DMSO/MeOH confirm the two-coordinated Ag(+) complexes in solution, and the results of the (1)H NMR titrations of DMSO solutions of 5-nitroquinoline and 8-nitroquinoline with AgNO3 in DMSO suggest that 5-nitroquinoline is more strongly coordinated to the silver ion.

Ca10(Cr(V)O4)6(Cr(VI)O4), a disordered mixed-valence chromium compound exhibiting inversion twinning.

The structure analysis of so-called 9CaO·4CrO(3)·Cr(2)O(3) proved it to be the title compound, decacalcium hexakis[chromate(V)] chromate(VI), with the simultaneous presence of unusual chromium oxidation states. The structure determination was carried out on a crystal that had inversion twinning. The Cr(VI)O(4) tetrahedron is situated on a threefold axis and is disordered over two possible orientations that share three O atoms, while the Cr(V)O(4) tetrahedra are in general positions and are ordered. The charge is balanced by Ca(2+) cations, one of which is located on a threefold axis. The Ca(2+) ions are coordinated by six, seven or eight O atoms. The compound is a significant phase in the CaO-CrO(x) system and its formation reduces the refractoriness of calcium-rich compositions in an oxidizing atmosphere.

Synthesis and structure elucidation of novel fused 1,2,4-triazine derivatives as potent inhibitors targeting CYP1A1 activity.

Synthesis and structure elucidation of new series of novel fused 1,2,4-triazine derivatives 3a-3f, 4a-4i and 6a-6b and their inhibitory activities are presented. Molecular structures of the synthesized compounds were confirmed by (1)H NMR, (13)C NMR, MS spectra and elemental analyses. X-ray crystallographic analysis was performed on 2-acetyl-8-(N,N-diacetylamino)-6-(4-methoxybenzyl)-3-(4-methoxy-phenyl)-7-oxo-2,3-dihydro-7H-[1,2,4]triazolo[4,3-b][1,2,4]triazine 3d and 2-acetyl-8-(N-acetylamino)-6-benzyl-3-(4-chlorophenyl)-3-methyl-7-oxo-2,3-dihydro-7H-[1,2,4]triazolo[4,3-b][1,2,4]triazine 4e to secure their structures. The inhibitory effect of these compounds toward the CPY1A1 activity was screened to determine their potential as promising anticancer drugs. Our data showed that compounds 4e, 5a, 5b and 6b possess the highest inhibitory effects among all tested compounds. Furthermore, analysis of triazolotriazine derivatives docking showed that these compounds bind only at the interface of substrate recognition site 2 (SRS2) and (SRS6) at the outer surface of the protein. Amino-acids ASN214, SER216 and ILE462 participate in the binding of these compounds through H-bonds.

X-ray and DFT studies of a mono- and binuclear copper(II) ionic compound containing a Schiff base.

In the structure of trans-bis(ethanol-κO)tetrakis(1H-imidazole-κN(3))copper(II) bis[µ-N-(2-oxidobenzylidene)-D,L-glutamato]-κ(4)O(1),N,O(2'):O(2');κ(4)O(2'):O(1),N,O(2')-bis[(1H-imidazole-κN(3))cuprate(II)], [Cu(C(3)H(4)N(2))(4)(C(2)H(6)O)(2)][Cu(2)(C(15)H(14)N(3)O(5))(2)], both ions are located on centres of inversion. The cation is mononuclear, showing a distorted octahedral coordination, while the anion is a binuclear centrosymmetric dimer with a square-pyramidal copper(II) coordination. An extensive three-dimensional hydrogen-bonding network is formed between the ions. According to B3LYP/6-31G* calculations, the two equivalent components of the anion are in doublet states (spin density located mostly on Cu(II) ions) and are coupled as a triplet, with only marginal preference over an open-shell singlet.

Ethyl 1-ethyl-7-fluoro-4-oxo-1,4-dihydroquinoline-3-carboxylate: X-ray and DFT studies.

The basic building unit in the structure of the title compound, C(14)H(14)FNO(3), is pairs of molecules arranged in an antiparallel fashion, enabling weak C-H···O interactions. Each molecule is additionally involved in π-π interactions with neighbouring molecules. The pairs of molecules formed by the C-H···O hydrogen bonds and π-π interactions form ribbon-like chains running along the c axis. Theoretical calculations based on these pairs showed that, although the main intermolecular interaction is electrostatic, it is almost completely compensated by an exchange-repulsion contribution to the total energy. As a consequence, the dominating force is a dispersion interaction. The F atoms form weak C-F···H-C interactions with the H atoms of the neighbouring ethyl groups, with H···F separations in the range 2.59-2.80 Å.

The coordination polymer poly[(µ3-3-aminocarbonylpyrazine-2-carboxylato-κ3N1:O2:O2')silver(I)].

The title compound, [Ag(C(6)H(4)N(3)O(3))](n) or [Ag(pyzca)](n) (where pyzca is 3-aminocarbonylpyrazine-2-carboxylate), (I), was obtained by silver-catalysed partial hydrolysis of pyrazine-2,3-dicarbonitrile in aqueous solution. The compound has a distorted trigonal-planar coordination geometry around the Ag(I) ion, with each ligand bridging three Ag(I) ions to form a one-dimensional strand of molecules parallel to the b axis. An extensive hydrogen-bond pattern connects these strands to form a three-dimensional network of mog topology.

A new Mo Schiff base complex: methanol[N'-(3-meth-oxy-2-oxidobenzyl-idene)benzohydrazidato]dioxido-molybdenum(VI).

In the title benzil-idene Schiff base molybdenum(VI) complex, [Mo(C(15)H(12)N(2)O(3))O(2)(CH(3)OH)], the Mo(VI) ion is coordinated by two oxide O atoms and by two O atoms and one N atom of the tridentate N'-(3-meth-oxy-2-oxidobenzyl-idene)benzo-hydrazidate (L) Schiff base ligand. The methanol O atom completes the distorted octa-hedral configuration of the Mo(VI) atom. Strong O-H⋯N hydrogen bonds form a C(5) chain around a 2(1) screw axis. Weak C-H-O hydrogen bonds are also present.

Synthesis, crystal structure, quantum chemical calculations, DNA interactions, and antimicrobial activity of [Ag(2-amino-3-methylpyridine)(2)]NO(3) and [Ag(pyridine-2-carboxaldoxime)NO(3)].

[Ag(2-amino-3-methylpyridine)(2)]NO(3) (1) and [Ag(pyridine-2-carboxaldoxime)NO(3)] (2) were prepared from corresponding ligands and AgNO(3) in water/ethanol solutions, and the products were characterized by IR, elemental analysis, NMR, and TGA. The X-ray crystal structures of the two compounds show that the geometry around the silver(I) ion is bent for complex 1 with nitrate as an anion and trigonal planar for complex 2 with nitrate coordinated. ESI-MS results of solutions of 2 indicate the independent existence in solution of the [Ag(pyridine-2-carboxaldoxime)](+) ion. The geometries of the complexes are well described by DFT calculations using the ZORA relativistic approach. The compounds were tested against 14 different clinically isolated and four ATCC standard bacteria and yeasts and also compared with 17 commonly used antibiotics. Both 1 and 2 exhibited considerable activity against S. lutea , M. lutea , and S. aureus and against the yeast Candida albicans , while 2-amino-3-methylpyridine is slightly active and pyridine-2-carboxaldoxime shows no antimicrobial activity. In addition, the interaction of these metal complexes with DNA was investigated. Both 1 and 2 bind to DNA and reduce its electrophoretic mobility with different patterns of migration, while the ligands themselves induce no change.

5,5'-Bis(hydroxymethyl)-3,3'-dimethoxybiphenyl-2,2'-diol with a new three-dimensional 3-modal topology of synthons.

The title lignin model compound, C(16)H(18)O(6), resides on a twofold axis parallel with the b axis, with the mid-point of the internal C-C(-x + 1, y, -z + 1/2) bond located on the twofold axis. The exo angles between the methoxy groups and the benzene rings deviate significantly from the expected value of 120° [125.15 (7) and 114.27 (6)°]. A 12-coordinated 3-modal three-dimensional net with a new topology was identified on the synthon level. A comparison of the flexibility of related o,o'-disubstituted biphenyl derivatives and biphenyl is presented, with the angles between the ring planes in substituted biphenyls found to be in the range 40-70°.

Two polymorphs of a lead(II) complex with 8-hydroxy-2-methylquinoline and thiocyanate.

Two distinct polymorphs of bis(mu(2)-methylquinolin-8-olato)-kappa(3)N,O:O;kappa(3)O:N,O-bis[(isothiocyanato-kappaN)lead(II)], [Pb(2)(C(10)H(8)NO)(2)(NCS)(2)], (I), forming dinuclear complexes from a methanolic solution containing lead(II) nitrate, 2-methylquinolin-8-ol (M-Hq) and KSCN, crystallized concomitantly as colourless prisms [form (Ia)] and long thin colourless needles [form (Ib)]. In both cases, the complexes lie across a centre of inversion. The polymorphs differ substantially in their conformation and in their interactions, viz. Pb...S and pi-pi for form (Ia) and Pb...S, Pb...pi and C-H...pi for form (Ib).

Redetermination of Na(3)TaF(8).

The crystal structure of trisodium octafluoridotantalate, Na(3)TaF(8), has been redetermined using diffractometer data collected at 153 K, resulting in more accurate bond distances and angles than obtained from a previous structure determination based on film data. The structure is built from layers running along [101], which are formed by distorted [TaF(8)] antiprisms and [NaF(6)] rectangular bipyramids sharing edges and corners. The individual layers are separated by eight-coordinated Na ions. Two atoms in the asymmetric unit are in special positions: the Ta atom is on a twofold axis in Wyckoff position 4e and one of the Na ions lies on an inversion centre in Wyckoff site 4d.

2-{[(3-Fluorophenyl)amino]methylidene}-3-oxobutanenitrile and 5-{[(3-fluorophenyl)amino]methylidene}-2,2-dimethyl-1,3-dioxane-4,6-dione: X-ray and DFT studies.

In the crystal structures of the title compounds, C(11)H(9)FN(2)O, (I), and C(13)H(12)FNO(4), (II), the molecules are joined pairwise via different hydrogen bonds and the constituent pairs are crosslinked by weak C-H...O hydrogen bonds. The basic structural motif in (I), which is partially disordered, comprises pairs of molecules arranged in an antiparallel fashion which enables C-H...N[triple bond]C interactions. The pairs of molecules are crosslinked by two weak C-H...O hydrogen bonds. The constituent pair in (II) is formed by intramolecular bifurcated C-H...O/O' and combined inter- and intramolecular N-H...O hydrogen bonds. In both structures, F atoms form weak C-F...H-C interactions with the H atoms of the two neighbouring methyl groups, the H...F separations being 2.59/2.80 and 2.63/2.71 A in (I) and (II), respectively. The bond orders in the molecules, estimated using the natural bond orbitals (NBO) formalism, correlate with the changes in bond lengths. Deviations from the ideal molecular geometry are explained by the concept of non-equivalent hybrid orbitals. The existence of possible conformers of (I) and (II) is analysed by molecular calculations at the B3LYP/6-31+G** level of theory.

Hexaaqua-zinc(II) bis-[tris-(3-carb-oxy-pyridine-2-carboxyl-ato)zincate(II)].

The title compound, [Zn(H(2)O)(6)][Zn(C(7)H(4)NO(4))(3)](2), consists of two [Zn(py-2,3-dcH)(3)](-) anions (py-2,3-dcH is 3-carboxy-pyridine-2-carboxylate) and one [Zn(H(2)O)(6)](2+) cation. The anion is a six-coordinate complex located on a threefold rotation axis with a slightly distorted octa-hedral geometry around Zn(2+) ion. The cation is also six-coordinate with an octa-hedral geometry around the Zn atom, located at a axis. Non-covalent inter-actions such as π-π stacking [centroid-centroid distance = 3.828 (4)Å] and O-H⋯O hydrogen bonds play important roles in stabilizing the supra-molecular structure.

2,3:4,6-Di-O-isopropylidene-alpha-L-sorbofuranose and 2,3-O-isopropylidene-alpha-L-sorbofuranose.

In the title compounds, C(12)H(20)O(6), (I), and C(9)H(16)O(6), (II), the five-membered furanose ring adopts a (4)T(3) conformation and the five-membered 1,3-dioxolane ring adopts an E(3) conformation. The six-membered 1,3-dioxane ring in (I) adopts an almost ideal (O)C(3) conformation. The hydrogen-bonding patterns for these compounds differ substantially: (I) features just one intramolecular O-H...O hydrogen bond [O...O = 2.933 (3) A], whereas (II) exhibits, apart from the corresponding intramolecular O-H...O hydrogen bond [O...O = 2.7638 (13) A], two intermolecular bonds of this type [O...O = 2.7708 (13) and 2.7730 (12) A]. This study illustrates both the similarity between the conformations of furanose, 1,3-dioxolane and 1,3-dioxane rings in analogous isopropylidene-substituted carbohydrate structures and the only negligible influence of the presence of a 1,3-dioxane ring on the conformations of furanose and 1,3-dioxolane rings. In addition, in comparison with reported analogs, replacement of the -CH(2)OH group at the C1-furanose position by another group can considerably affect the conformation of the 1,3-dioxolane ring.

Bis(1,3,5-triazine-2,4,6-triamine-kappaN(1))silver(I) nitrate.

The title compound, [Ag(C(3)H(6)N(6))(2)]NO(3), has an alternating two-dimensional bilayer structure supported by extensive hydrogen bonds. The [Ag(melamine)(2)](+) cationic monomers (melamine is 1,3,5-triazine-2,4,6-triamine) are connected via N-H...N hydrogen bonds to form two-dimensional sheets. Nitrate groups are sandwiched between two sheets through N-H...O hydrogen bonds. An almost perfectly linear coordination geometry is found for the Ag(I) ions. The triazine ligands are slightly distorted due to pi-pi interactions.