Pesquisa | BVS Violência e Saúde

1.

Isolating salient variations of interest in single-cell data with contrastiveVI.

Weinberger, Ethan; Lin, Chris; Lee, Su-In.

Nat Methods ; 20(9): 1336-1345, 2023 09.

Artigo em Inglês | MEDLINE | ID: mdl-37550579

2.

GNAQ-Regulated ZO-1 and ZO-2 Act as Tumor Suppressors by Modulating EMT Potential and Tumor-Repressive Microenvironment in Lung Cancer.

Kim, Hyung Seok; Lee, Su In; Choi, Yu Rim; Kim, Jiyun; Eun, Jung Woo; Song, Kyoung Seob; Jeong, Jee-Yeong.

Int J Mol Sci ; 24(10)2023 May 15.

Artigo em Inglês | MEDLINE | ID: mdl-37240145

3.

Adversarial deconfounding autoencoder for learning robust gene expression embeddings.

Dincer, Ayse B; Janizek, Joseph D; Lee, Su-In.

Bioinformatics ; 36(Suppl_2): i573-i582, 2020 12 30.

Artigo em Inglês | MEDLINE | ID: mdl-33381842

4.

AIControl: replacing matched control experiments with machine learning improves ChIP-seq peak identification.

Hiranuma, Naozumi; Lundberg, Scott M; Lee, Su-In.

Nucleic Acids Res ; 47(10): e58, 2019 06 04.

Artigo em Inglês | MEDLINE | ID: mdl-30869146

5.

The clinical potential of counterfactual AI models.

Lee, Su-In; Topol, Eric J.

Lancet ; 403(10428): 717, 2024 Feb 24.

Artigo em Inglês | MEDLINE | ID: mdl-38401957

6.

Dopamine receptor antagonists induce differentiation of PC-3 human prostate cancer cell-derived cancer stem cell-like cells.

Lee, Su In; Roney, Md Saiful Islam; Park, Jong Hyeok; Baek, Ji-Young; Park, Jooyeon; Kim, Sang Kyum; Park, Song-Kyu.

Prostate ; 79(7): 720-731, 2019 05.

Artigo em Inglês | MEDLINE | ID: mdl-30816566

7.

Reproducibility standards for machine learning in the life sciences.

Heil, Benjamin J; Hoffman, Michael M; Markowetz, Florian; Lee, Su-In; Greene, Casey S; Hicks, Stephanie C.

Nat Methods ; 18(10): 1132-1135, 2021 10.

Artigo em Inglês | MEDLINE | ID: mdl-34462593

8.

Identifying Network Perturbation in Cancer.

Grechkin, Maxim; Logsdon, Benjamin A; Gentles, Andrew J; Lee, Su-In.

PLoS Comput Biol ; 12(5): e1004888, 2016 05.

Artigo em Inglês | MEDLINE | ID: mdl-27145341

9.

Sparse expression bases in cancer reveal tumor drivers.

Logsdon, Benjamin A; Gentles, Andrew J; Miller, Chris P; Blau, C Anthony; Becker, Pamela S; Lee, Su-In.

Nucleic Acids Res ; 43(3): 1332-44, 2015 Feb 18.

Artigo em Inglês | MEDLINE | ID: mdl-25583238

10.

A Distributed Network for Intensive Longitudinal Monitoring in Metastatic Triple-Negative Breast Cancer.

Blau, C Anthony; Ramirez, Arturo B; Blau, Sibel; Pritchard, Colin C; Dorschner, Michael O; Schmechel, Stephen C; Martins, Timothy J; Mahen, Elisabeth M; Burton, Kimberly A; Komashko, Vitalina M; Radenbaugh, Amie J; Dougherty, Katy; Thomas, Anju; Miller, Christopher P; Annis, James; Fromm, Jonathan R; Song, Chaozhong; Chang, Elizabeth; Howard, Kellie; Austin, Sharon; Schmidt, Rodney A; Linenberger, Michael L; Becker, Pamela S; Senecal, Francis M; Mecham, Brigham H; Lee, Su-In; Madan, Anup; Ronen, Roy; Dutkowski, Janusz; Heimfeld, Shelly; Wood, Brent L; Stilwell, Jackie L; Kaldjian, Eric P; Haussler, David; Zhu, Jingchun.

J Natl Compr Canc Netw ; 14(1): 8-17, 2016 01.

Artigo em Inglês | MEDLINE | ID: mdl-26733551

11.

NgR1 Expressed in P19 Embryonal Carcinoma Cells Differentiated by Retinoic Acid Can Activate STAT3.

Lee, Su In; Yun, Jieun; Baek, Ji-Young; Jeong, Yun-Ji; Kim, Jin-Ah; Kang, Jong Soon; Park, Sun Hong; Kim, Sang Kyum; Park, Song-Kyu.

Korean J Physiol Pharmacol ; 19(2): 105-9, 2015 Mar.

Artigo em Inglês | MEDLINE | ID: mdl-25729271

12.

Genetic Variation of Monilinia fructicola Population in Korea.

Lee, Su In; Lee, Hwa-Jung; Kwak, Youn-Sig.

Plant Pathol J ; 40(2): 205-217, 2024 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-38606449

13.

A deep profile of gene expression across 18 human cancers.

Qiu, Wei; Dincer, Ayse B; Janizek, Joseph D; Celik, Safiye; Pittet, Mikael; Naxerova, Kamila; Lee, Su-In.

bioRxiv ; 2024 Mar 17.

Artigo em Inglês | MEDLINE | ID: mdl-38559197

14.

Transparent medical image AI via an image-text foundation model grounded in medical literature.

Kim, Chanwoo; Gadgil, Soham U; DeGrave, Alex J; Omiye, Jesutofunmi A; Cai, Zhuo Ran; Daneshjou, Roxana; Lee, Su-In.

Nat Med ; 30(4): 1154-1165, 2024 Apr.

Artigo em Inglês | MEDLINE | ID: mdl-38627560

15.

Engagement of CD300c by a novel monoclonal antibody induces the differentiation of monocytes to M1 macrophages.

Lee, Su In; Kim, Haneul; Lim, Chang Ki; Kim, Jae Dong; Heo, Jeong Seok; Jung, Joongoo; Kim, Chan; Chon, Hong Jae; Jeon, Jae-Won.

Immunobiology ; 229(1): 152780, 2024 Jan.

Artigo em Inglês | MEDLINE | ID: mdl-38159528

16.

A systematic approach to multifactorial cardiovascular disease: causal analysis.

Schwartz, Stephen M; Schwartz, Hillel T; Horvath, Steven; Schadt, Eric; Lee, Su-In.

Arterioscler Thromb Vasc Biol ; 32(12): 2821-35, 2012 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-23087359

17.

Unraveling the Role of Cytochrome P450 as a Key Regulator Lantipeptide Production in Streptomyces globisporus.

Kim, Da-Ran; Lee, Su In; Kwak, Youn-Sig.

Plant Pathol J ; 39(6): 566-574, 2023 Dec.

Artigo em Inglês | MEDLINE | ID: mdl-38081316

18.

ExplaiNAble BioLogical Age (ENABL Age): an artificial intelligence framework for interpretable biological age.

Qiu, Wei; Chen, Hugh; Kaeberlein, Matt; Lee, Su-In.

Lancet Healthy Longev ; 4(12): e711-e723, 2023 12.

Artigo em Inglês | MEDLINE | ID: mdl-37944549

19.

Predictive and robust gene selection for spatial transcriptomics.

Covert, Ian; Gala, Rohan; Wang, Tim; Svoboda, Karel; Sümbül, Uygar; Lee, Su-In.

Nat Commun ; 14(1): 2091, 2023 04 12.

Artigo em Inglês | MEDLINE | ID: mdl-37045821

20.

Dissection of medical AI reasoning processes via physician and generative-AI collaboration.

DeGrave, Alex J; Cai, Zhuo Ran; Janizek, Joseph D; Daneshjou, Roxana; Lee, Su-In.

medRxiv ; 2023 May 16.

Artigo em Inglês | MEDLINE | ID: mdl-37292705

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