Marine eDNA sampling from submerged surfaces with paint rollers.

Environmental DNA (eDNA) analyses of species present in marine environments is the most effective biological diversity measurement tool currently available. eDNA sampling methods are an intrinsically important part of the eDNA biodiversity analysis process. Identification and development of eDNA sampling methods that are as rapid, affordable, versatile and practical as possible will improve rates of detection of marine species. Optimal outcomes of eDNA biodiversity surveys come from studies employing high levels of sampling replication, so any methods that make sampling faster and cheaper will improve scientific outcomes. eDNA sampling methods that can be applied more widely will also enable sampling from a greater range of marine surface micro-habitats, resulting in detection of a wider range of organisms. In this study, we compared diversity detection by several methods for sampling eDNA from submerged marine surfaces: polyurethane foam, nylon swabs, microfibre paint rollers, and sediment scoops. All of the methods produced a diverse range of species identifications, with >250 multicellular species represented by eDNA at the study site. We found that widely-available small paint rollers were an effective, readily available and affordable method for sampling eDNA from underwater marine surfaces. This approach enables the sampling of marine eDNA using extended poles, or potentially by remotely operated vehicles, where surface sampling by hand is impractical.

The functional diversity of fish assemblages in the vicinity of oil and gas pipelines compared to nearby natural reef and soft sediment habitats.

As the offshore hydrocarbon industry matures and decommissioning activities are expected to increase, there is a requirement to assess the environmental consequences of different pipeline decommissioning options. Previous research on fish and other ecological components associated with pipelines has focused on examining species richness, abundance and biomass surrounding structures. The extent to which subsea pipelines mimic or alter ecosystem function compared with nearby natural habitats is unknown. We analyse differences in fish assemblage biological trait composition and the functional diversity at exposed shallow-water subsea pipelines, nearby natural reef and soft sediment habitats, using mini stereo-video remotely operated vehicles (ROV). Habitats significantly differed in assemblage trait composition. The pipeline and reef habitats shared a more similar functional composition and had the presence of key functional groups required for the development and maintenance of healthy coral reef systems. The reef habitat had the greatest functional diversity, followed by the pipeline habitat and soft sediment habitat respectively.

Using environmental DNA to better inform decision making around decommissioning alternatives for offshore oil and gas infrastructure.

Artificial reefs are being utilised globally to aid in natural resource management, conservation, restoration or the creation of unique marine habitats. There is discussion around the optimal construction materials and designs for artificial reefs, the influences these have on biological communities, and the resulting ecological and social benefits. This discussion also includes the ecological value of repurposed marine infrastructure, such as decommissioned oil and gas platforms. Platforms often have an operational life spanning multiple decades, over which time they can develop extensive and unique community assemblages. The creation of artificial reefs by repurposing oil and gas platforms can have ecological, economic and sociological merit. However, with >12,000 platforms requiring decommissioning globally, there is the need for holistic assessment of biological communities associated with these platforms to inform the potential outcomes of different decommissioning options. We use environmental DNA metabarcoding (eDNA) of water, bio-foul and sediment samples to census broad eukaryotic diversity at eight platforms in the Gulf of Thailand (GoT) and five nearby soft sediment habitat locations. We sampled three target depths at sites (shallow, mid, deep) and detected 430 taxa at platforms, with higher diversity in shallow (near-surface) samples (313 taxa), compared to mid (30 m collection depth; 261 taxa) and deep (50 m; 273 taxa). Three percent of taxa were shared among all depths at platforms with distinct assembles at each depth. Introduced species are an ongoing risk for platforms, however the eDNA detected no known introduced species. While the eDNA data provide broad taxon coverage and significant assemblage patterns, ongoing sampling innovation, assay design and local reference material still require development to obtain the maximum benefit of the technique. This study highlights the versatility and scalability of eDNA metabarcoding to holistically census marine infrastructure and inform the management and potential conservation of extant communities.

Complementary molecular and visual sampling of fish on oil and gas platforms provides superior biodiversity characterisation.

Offshore oil and gas platforms have the potential to provide complex refugia for fish and benthic colonisers. We compare two methods of biodiversity assessment for fish and elasmobranchs at seven decommissioned oil and gas platforms as well as five sediment sites, located 5 km from platforms, in the Gulf of Thailand. Using surveys from stereo-video ROV transects, and data from Environmental DNA (eDNA) water-column samples, we detected fish and elasmobranch taxa from 39 families and 66 genera across both platform and sediment sites with eDNA, compared with 18 families and 29 genera by stereo-ROV with platforms yielding significantly greater species richness. This study demonstrates that the combination of stereo-video ROV and eDNA provide effective, non-extractive and complementary methods to enhance data capture. This approach sets new benchmarks for evaluating fish assemblages surrounding platforms and will enhance measurements of biota to inform decisions on the fate of oil/gas infrastructure.

Evidence of fish following towed oil and gas platforms to a reefing site and rapid colonisation.

We investigated the composition and abundance of fish assemblages associated with seven offshore oil and gas platform jackets in the Gulf of Thailand before (pre-lift and pre-tow), and immediately after relocation (post-tow and reefed). Jackets were cut, lifted until partly out of the water, and attached to the rear of a heavy lift vessel. They were towed at speeds of 2.7 - 3.3 knots for between 133.9 and 205.4 km before being placed on the seafloor at an artificial reef site. Sixteen species of fish were observed both before and after jacket towing. We believe these species have sought refuge in the complex structures out of the current and have remained with the jackets. Ten species of fish were observed before towing, but not after. A further seven species of fish were only observed after the jackets were relocated onto the seafloor and were assumed to be early colonisers to the structures. The paper provides empirical evidence of a much-discussed paradigm that fish can swim great distances following moved structures, and further evidence of the ability of fish to rapidly colonise reefed structures.

Fish associations with shallow water subsea pipelines compared to surrounding reef and soft sediment habitats.

Offshore decommissioning activities are expected to increase as oil and gas subsea infrastructure becomes obsolete. Decisions on decommissioning alternatives will benefit from quantifying and understanding the marine communities associated with these structures. As a case study, fish assemblages associated with an inshore network of subsea pipelines located on the North West shelf of Western Australia were compared to those in surrounding natural reef and soft sediment habitats using remotely operated vehicles fitted with a stereo-video system (stereo-ROVs). The number of species, the abundance, biomass, feeding guild composition and the economic value of fishes were compared among habitats. The community composition of fish associated with pipelines was distinct from those associated with natural habitats, and was characterised by a greater abundance and/or biomass of fish from higher trophic levels (e.g. piscivores, generalist carnivores and invertivores), including many species considered to be of value to commercial and recreational fishers. Biomass of fish on pipelines was, on average, 20 times greater than soft sediments, and was similar to natural reefs. However, the biomass of species considered important to fisheries recorded on the pipelines was, on average 3.5 times greater than reef and 44.5 times greater than soft sediment habitats. This study demonstrates that fish assemblages on the pipeline infrastructure exhibit high ecological and socioeconomic values.

A comparison of stereo-BRUVs and stereo-ROV techniques for sampling shallow water fish communities on and off pipelines.

We compared and contrasted fish assemblage data sampled by baited remote underwater stereo-video systems (stereo-BRUVs) and stereo-video remotely operated vehicles (stereo-ROVs) from subsea pipelines, reef and soft sediment habitats. Stereo-BRUVs sampled greater fish diversity across all three habitats, with the stereo-ROV sampling ~46% of the same species on pipeline and reef habitats. Larger differences existed in soft sediment habitats, with stereo-BRUVs recording ~65% more species than the stereo-ROV, the majority of which were generalist carnivores. These differences were likely due to the bait used with stereo-BRUVs attracting fish from a large and unknown area. Fish may have also avoided the moving stereo-ROV, an effect possibly magnified in open soft sediment habitats. As a result of these biases, we recommend stereo-ROVs for assessing fish communities on pipelines due to their ability to capture fish in-situ and within a defined sampling area, but caution is needed over soft sediment habitats for ecological comparisons.

A comparison of marine protected areas and alternative approaches to coral-reef management.

Marine protected areas (MPAs) have been widely adopted as the leading tool for coral-reef conservation, but resource users seldom accept them , and many have failed to produce tangible conservation benefits [3]. Few studies have objectively and simultaneously examined the types of MPAs that are most effective in conserving reef resources and the socioeconomic factors responsible for effective conservation [4-6]. We simultaneously explored measures of reef and socioeconomic conservation success at four national parks, four comanaged reserves, and three traditionally managed areas in Indonesia and Papua New Guinea. Underwater visual censuses of key ecological indicators [7, 8] revealed that the average size and biomass of fishes were higher in all areas under traditional management and at one comanaged reserve when compared to nearby unmanaged areas. Socioeconomic assessments [6, 9, 10] revealed that this "effective conservation" was positively related to compliance, visibility of the reserve, and length of time the management had been in place but negatively related to market integration, wealth, and village population size. We suggest that in cases where the resources for enforcement are lacking, management regimes that are designed to meet community goals can achieve greater compliance and subsequent conservation success than regimes designed primarily for biodiversity conservation.

Life history patterns shape energy allocation among fishes on coral reefs.

Although critically important, the link between animal life histories and ecosystem energetics is seldom explored. In the pursuit of ecological simplification, ecosystem properties are typically described by models based on static counts, where organisms are aggregated into trophic- or size-based groups. Consequently, output is often based on an assumption that larger group biomass equals greater energetic contribution. Here, we modelled the individual growth of over 58,000 fishes from 74 genera within a coral reef ecosystem to investigate the role and importance of taxon-specific life histories to the division, spatial distribution and relative contribution of biomass production within 14 coral reef fish families. Rank changes among families in standing biomass to biomass production indicated that small cryptic families (e.g. Gobiidae and Blenniidae) exhibit collective growth potentials equal to or exceeding those of many other common families composed of individuals with body-sizes 1-3 orders of magnitude larger. Remaining at high risk of predation throughout their lives as a consequence of their small size, these cryptic fishes also provide a constant food resource and supply of reproductive energy to coral reefs throughout the year. Enhanced further by the strength and diversity of their trophic relationships within food webs, the highly productive nature of these small cryptic fishes suggests they make a substantial contribution to the flow of energy in coral reef ecosystems via predatory pathways. It appears that life histories leave a strong imprint on ecosystem energy fluxes and illustrate the importance of incorporating taxon-specific features when assigning values to key ecosystem processes.