On-Demand Ligand-Base DNA Sensor with Electrochemical Impedance Spectroscopy.

We have developed a DNA sensor that can be finalized to detect a specific target on demand. The electrode surface was modified with 2,7-diamino-1,8-naphthyridine (DANP), a small molecule with nanomolar affinity for the cytosine bulge structure. The electrode was immersed in a solution of synthetic probe-DNA that had a cytosine bulge structure at one end and a complementary sequence to the target DNA at the other end. The strong binding between the cytosine bulge and DANP anchored the probe DNAs to the electrode surface, and the electrode became ready for target DNA sensing. The complementary sequence portion of the probe DNA can be changed as requested, allowing for the detection of a wide variety of targets. Electrochemical impedance spectroscopy (EIS) with the modified electrode detected target DNAs with a high sensitivity. The charge transfer resistance (Rct) extracted from EIS showed a logarithmic relationship with the concentration of target DNA. The limit of detection (LoD) was less than 0.01 µM. By this method, highly sensitive DNA sensors for various target sequences could be easily produced.

Anomalous Enhancement of Electrochemical Charge Transfer by a Ru Complex Ion Intercalator.

We have found that the DNA intercalator [Ru(bpy)2DPPZ]2+ (bpy = 2,2'-bipyridine; DPPZ = dipyrido[3,2-a:2',3'-c]phenazine) causes an anomalous increase in charge transfer in electrochemical impedance spectroscopy (EIS). With a carbonaceous electrode and a 1 mM hexacyanoferrate (1 mM [Fe(CN)6]3- and 1 mM [Fe(CN)6]4-) mediator, we found that adding only 1 µM [Ru(bpy)2DPPZ]2+ greatly enhanced the charge transfer between the electrode and hexacyanoferrate mediator, independently of other electrolytes or buffer components. The effect started with a one millionth amount of hexacyanoferrate. Since [Ru(bpy)2DPPZ]2+ can intercalate with dsDNA, the effect is highly applicable for dsDNA detection or PCR monitoring. With further developments of this method, EIS sensors not requiring specific electrode modifications should be possible.

Electrochemical Impedimetric Real-Time Polymerase Chain Reactions Using Anomalous Charge Transfer Enhancement.

We developed a new electrochemical impedimetric method for the real-time detection of polymerase chain reactions (PCR) based on our recent discovery that the DNA intercalator, [Ru(bpy)2DPPZ]2+, anomalously enhances charge transfer between redox mediators, K4[Fe(CN)6]/K3[Fe(CN)6], and a carbon electrode. Three mM [Fe(CN)6]3-/4- and 5 µM [Ru(bpy)2DPPZ]2+ were added to the PCR solution, and electrochemical impedance spectroscopy (EIS) measurements were performed at each elongation heat cycle. The charge transfer resistance (Rct) was initially low due to the presence of [Ru(bpy)2DPPZ]2+ in the solution. As PCR progressed, amplicon dsDNA was produced exponentially, and intercalated [Ru(bpy)2DPPZ]2+ ions, which could be detected as a steep Rct, increased at specific heat cycles depending on the amount of template DNA. The Rct increase per heat cycle, ΔRct, showed a peak at the same heat cycle as optical detection, proving that PCR can be accurately monitored in real time by impedance measurement. This simple method will enable a cost-effective and portable PCR device.

[70]Fullerenes assist the formation of phospholipid bicelles at low lipid concentrations.

The incorporation of neutral [70]fullerenes (C70) led to bicelle formation in a relatively low lipid concentration range from neutral lipid mixtures (DMPC/DHPC). Furthermore, C70 addition resulted in the formation of large bicelles with a radius of ca. 100 nm, in contrast to C70-free bicelles that were formed from anionic lipid mixtures (DMPC/DHPC/DMPG). The stabilization of these bicelles was attributed to C70 incorporation into the membranes.

Time-resolved observation of chiral-index-selective wrapping on single-walled carbon nanotube with non-aromatic polysilane.

In the present paper, we ascertain two novel findings on chiral-index-selective binding/separating of single-walled carbon nanotubes (SWNTs) with a nonaromatic polymer, poly(dialkylsilane) (PSi). PSi is a typical σ-conjugated polymer, composed of alkyl side chains attached to the silicon (Si)-catenated main chain. First, PSi's with linear alkyl side chains showed significant diameter-selective wrapping for SWNTs with ca. 0.9 nm in diameter, resulting in the selective separation of (7,6) and (9,4) SWNTs. Its driving force was demonstrated to be cooperative CH-π interactions among the alkyl side chains of PSi's and the curved graphene of SWNTs. Second, the dynamic wrapping behavior of PSi's onto SWNTs was elucidated with time-resolved UV spectroscopy. Highly anisotropic UV absorption of PSi along the Si main chain was utilized as a "chromophoric indicator" to monitor the global/local conformations, which enabled us to track kinetic structural changes of PSi's on SWNTs. Consequently, we concluded that upon wrapping, flexible/helical PSi with an average dihedral angle (φ) of 145° and Kuhn's segment length (λ(-1)) of 2.6 nm interconverted to the more stiffer/planar conformation with 170° and λ(-1) of 7.4 nm. Furthermore, through kinetic analyses of the time-course UV spectra, we discovered the fact that PSi's involve three distinct structural changes during wrapping. That is, (i) the very fast adsorption of several segments within dead time of mixing (<30 ms), following (ii) the gradual adsorption of loosely wrapped segments with the half-maximum values (τ(1)) of 31.4 ms, and (iii) the slow rearrangement of the entire chains with τ(2) of 123.1 ms, coupling with elongation of the segment lengths. The present results may be useful for rational design of polymers toward chiral-index-selective binding/separating of desired (n,m) SWNTs.

Chemical-stimuli-controllable circularly polarized luminescence from anion-responsive π-conjugated molecules.

Introduction of a BINOL-boron moiety to dipyrrolyldiketones as precursors of anion-responsive π-conjugated molecules results in the formation of a chiral environment in the form of anion-free receptors and anion-binding complexes. Conformation changes by inversion (flipping) of two pyrrole rings as a result of anion binding can control the chiroptical properties of the anion receptors. In particular, appropriate pyrrole ß-substituents induce distorted receptor π-planes and, as a result, give larger circularly polarized luminescence (CPL), which can be tuned by chemical stimuli (anions). This is the first example of chemical-stimuli-responsive CPL properties.

Angle-controlled arrangement of single-walled carbon nanotubes solubilised by 8-quinolinol metal chelate derivatives on mica.

We solubilised SWNTs of short length using a mechanochemical high-speed vibration milling (HSVM) through formation of complexes between the SWNTs and chelate complexes; the mixture formed a network structure on mica.

Water Solubilization of Fullerene Derivatives by ß-(1,3-1,6)-d-Glucan and Their Photodynamic Activities toward Macrophages.

Anionic and neutral fullerene derivatives were dissolved in water by using ß-(1,3-1,6)-d-glucan (ß-1,3-glucan) as a solubilizing agent. In the water-solubilized complexes, the concentrations of fullerene derivatives were ≈0.30 mm and the average particle sizes were ≈90 nm. The ß-1,3-glucan-complexed fullerene derivative with a carboxylic acid was found to have higher photodynamic activity toward macrophages under visible-light irradiation (λ>610 nm) than other ß-1,3-glucan-complexed fullerene derivatives. This result suggests that carboxylic acid moieties in the complex enhance the binding affinity with ß-1,3-glucan receptors on the surface of macrophages when the ß-1,3-glucan is recognized. In contrast, all ß-1,3-glucan-complexed fullerene derivatives showed no photodynamic activity toward HeLa cells under the same conditions.

Dispersed Gold Nanoparticle Array Produced by Apoferritins Utilizing Biomineralization and Chemical Conversion.

A new method for producing a dispersed gold nanoparticle (Au NP) array to anchor probe DNAs onto a DNA-sensing electrode has been developed. A homogenous gold sulfide (Au2S) core (precursor of Au NP) was biomineralized in the cavity of a mutant apoferritin (K98E) with enhanced negative outer-surface charges. We employed a slow chemical reaction system utilizing a stable cationic gold complex. K98E could attract the gold complex, and Au2S NPs were synthesized. K98E enabled dispersed placement of the synthesized Au2S core onto a cationic 3-aminopropyltriethoxysilane (APTES) layer on a substrate. UV-ozone treatment eliminated the protein shells and APTES layer. X-ray photoelectron spectroscopy confirmed that the Au2S core was reduced to Au NPs under the same treatment. Atomic force microscopy (AFM) clearly showed that the combination of apoferritin versatility, chemical system design, and UV-ozone treatment successfully produced a dispersed Au NP array on the substrate.

Single-walled carbon nanotubes template the one-dimensional ordering of a polythiophene derivative.

We have used a mechanochemical high-speed vibration milling (HSVM) technique to solubilize single-walled carbon nanotubes (SWNTs) in organic solvents through the formation of complexes between the SWNTs and a polythiophene (PT) derivative. This HSVM approach is superior to the conventional sonication method used to solubilize SWNTs in organic solvents. Moreover, we found that in these supramolecular complexes the PT chains were ordered one-dimensionally on the SWNT surfaces in organic solvents. [structure: see text].

Synthesis and Properties of [7]Helicene-like Compounds Fused with a Fluorene Unit.

[7]Helicene-like compounds with a fluorene unit were successfully synthesized using a platinum-catalyzed double cyclization reaction. Crystal structures and photophysical properties of these compounds were also studied. In particular, they were found to exhibit a high fluorescence quantum yield and a relatively large g value (dissymmetric factor) of circularly polarized luminescence (CPL) for small molecules.

Pyridyl-cyclodextrin for ultra-hydrosolubilization of [60]fullerene.

An efficient hydrosolubilizing reagent for [60]fullerene (C60) was newly developed with a γ-cyclodextrin (γ-CD) derivative having triazole-methoxypyridyl moieties at its 6-hydroxyl positions (PCD). Through solid-state mechanochemical complexation, PCD forms a hydrosoluble inclusion complex of C60 with a concentration of more than 70 mM. This is approximately 90 times greater than that with non-substituted γ-CD prepared by the same method.

Facile synthetic route to highly luminescent sila[7]helicene.

A facile synthetic route to dimethylsila[7]helicene by using a Lewis acid catalyzed double-cyclization reaction for construction of the twisted two phenanthrene moieties is described. Sila[7]helicene exhibited a high fluorescence quantum yield and a realatively large g value (dissymmetric factor) of circularly polarized luminencence (CPL) for small molecules.

NMR spectroscopic study of the complexation behaviors of deuterated cyclodextrins and [60]fullerene.

Cyclodextrins (CDxs) have been selectively deuterated using a Ru/C-catalyzed H-D exchange reaction in D2O. The structures of the deuterated CDxs barely changed and their (1)H NMR spectra became very simple, which made it possible for the deuterated CDxs to be applied to the analysis of CDx complexes. Furthermore, the deuterated CDxs allowed for the existence of the equilibrium between free and complexed CDx to be confirmed, even at rt.

Advantages and potential of lipid-membrane-incorporating fullerenes prepared by the fullerene-exchange method.

Lipid-membrane-incorporating C(60) and C(70) (LMIC(60) and LMIC(70)) were prepared by the fullerene-exchange reaction from the γ-cyclodextrin cavity to vesicles (we call this method the "exchange method"). An advantage of this method is that the ratios of [C(60)]/[lipids] and [C(70)]/[lipids] can be arbitrarily controlled by adjusting the ratios of the fullerenes and liposome. The maximum ratio (30 mol%) obtained was approximately 14 and 100 times higher than those achieved for LMIC(60) and LMIC(70) , respectively, that were prepared by the classical method, which we call the "premixing method" (dissolving lipids and C(60) or C(70) in chloroform, followed by concentration and extraction with water). Furthermore, the stabilities and photodynamic activities of the LMIC(60) and LMIC(70) solutions prepared by the exchange method were shown to be much higher than those prepared by the premixing method. That is, the exchange method was found to be superior to the premixing method as a preparative method of LMIC(60) and LMIC(70) for applications in photomedical and photomaterials chemistry.

Location of [60]fullerene incorporation in lipid membranes.

We confirmed that most C(60) fullerene units are located in the hydrophobic core of the lipid bilayer membrane in water-soluble lipid membrane incorporated C(60) (LMIC(60)) complexes using differential scanning calorimetry (DSC) and (13)C NMR spectra in the presence of radical labels.

Stiffness- and conformation-dependent polymer wrapping onto single-walled carbon nanotubes.

This work reports the effect of stiffness and conformation of chain-like polymers on wrapping behaviors around single-walled carbon nanotubes (SWNT). As a model of chain-like polymers, three kinds of poly(dialkylsilane) (PSi)s with random-coiled, flexible, and semiflexible main chains were employed. Complexes of PSi and SWNT were prepared using mechanochemical high-speed vibration milling (HSVM). Stiffness-dependent polymer wrapping behaviors were investigated using combinational analyses with a differential scanning calorimeter, transmission electron microscopy, and atomic force microscopy. Furthermore, the conformational behaviors of the PSi's wrapped onto SWNTs were characterized spectroscopically with ordinary UV spectroscopy. Random-coiled and flexible PSi's were successfully wrapped onto small bundles of SWNTs, in which their conformations were changed to fit the surface curvatures of the SWNTs. However, semiflexible PSi could not form a complex with SWNTs, and its conformation remained unchanged even after the same HSVM process. Knowledge gained from this study may lead to a new approach to molecular design of chain-like polymers for efficient wrapping materials for SWNTs.

Solubilization of single-walled carbon nanotubes by supramolecular complexes of barbituric acid and triaminopyrimidines.

In this letter, we report that single-walled carbon nanotubes (SWNTs) can be dissolved in organic solvents through the formation of admixtures with barbituric acid.triaminopyrimidine (BA.TP) complexes using mechanochemical high-speed vibration milling (HSVM) and sonication methods. In contrast, neither BA nor TP alone were capable of solubilizing SWNTs. Moreover, the glutarimide (GI).TP complex was also found to be incapable of solubilizing SWNTs because the two carbonyl groups and one imino group of GI are located on only one side of the molecule such that the GI.TP complex cannot form the desired hydrogen-bonding network. These results strongly suggest that the formation of a hydrogen-bonding network makes possible the formation of multipoint interactions with the surfaces of the SWNTs.