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1.
Analyst ; 149(2): 571-581, 2024 Jan 15.
Artigo em Inglês | MEDLINE | ID: mdl-38099606

RESUMO

B-cell precursor acute lymphoblastic leukemia (BCP-ALL) with chromosome translocations like KMT2A gene rearrangement (KMT2A-r) and BCR-ABL1 fusion gene have been recognized as crucial drivers in both BCP-ALL leukemogenesis and treatment management. Standard diagnostic protocols for proliferative diseases of the hematopoietic system, like KMT2A-r-ALL, are genetically based and strongly molecularly oriented. Therefore, an efficient diagnostic procedure requires not only experienced and multidisciplinary laboratory staff but also considerable instrumentation and material costs. In recent years, a Raman spectroscopy method has been increasingly used to detect subtle chemical changes in individual cells resulting from stress or disease. Therefore, the objective of this study was to identify Raman signatures for the molecular subtypes and to develop a classification method based on the unique spectroscopic profile of in vitro models that represent specific aberrations aimed at KMT2A-r (RS4;11, and SEM) and the BCR-ABL1 fusion gene (SUP-B15, BV-173, and SD-1). Data analysis was based on chemometric methods, i.e. principal component analysis (PCA), partial least squares discriminant analysis (PLS-DA), and support vector machine (SVM). The PCA-based multivariate model was used for pattern recognition of each investigated group of cells while PLS-DA and SVM were used to build models for the discrimination of spectra from the studied BCP-ALL molecular subtypes. The results showed that the studied molecular subtypes of ALL have characteristic spectroscopic profiles reflecting their peculiar biochemical state. The content of lipids (1600 cm-1), nucleic acids (789 cm-1), and haemoproteins (754, 1130, and 1315 cm-1), which are crucial in cell metabolism, was indicated as the main source of differentiation between subtypes. Identification of spectroscopic markers of cells with BCR-ABL1 or KMT2A-r may be useful in pharmacological studies to monitor the effectiveness of chemotherapy and further to understand differences in molecular responses between leukemia primary cells and cell lines.


Assuntos
Leucemia-Linfoma Linfoblástico de Células Precursoras B , Leucemia-Linfoma Linfoblástico de Células Precursoras , Humanos , Leucemia-Linfoma Linfoblástico de Células Precursoras/diagnóstico , Leucemia-Linfoma Linfoblástico de Células Precursoras/genética , Leucemia-Linfoma Linfoblástico de Células Precursoras B/genética , Análise Espectral Raman/métodos
2.
Oecologia ; 192(2): 341-350, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31919694

RESUMO

As acute stress induced by predation risk can generate significant oxidative damage, prey organisms are forced to balance their defence reaction and the cost of activating the cellular defence system. Stress tolerance differs significantly among species; therefore predator pressure indirectly shapes the community structure. To test adaptation abilities of amphipod crustaceans (Dikerogammarus villosus and Gammarus jazdzewskii) we exposed them to acute (35 min.) and chronic (1 or 7 days) predation risk (the Eurasian perch). We measured respiration (related to metabolic rate), cellular defence systems (antioxidant enzyme (catalase) activity and heat shock protein (Hsp70) concentration), and the level of oxidative damage (thiobarbituric acid reactive substances (TBARS) concentration). Both amphipods increased their respiration rate in the presence of predation cues, irrespective of the duration of their pre-exposure to danger. This increase in D. villosus was initiated more quickly (immediately vs. after 10 min. of the test) and lasted for a longer time (20 vs. 10 min.) than in G. jazdzewskii. However, only G. jazdzewskii after a short exposure to predation risk exhibited an increase in its catalase activity, Hsp70 concentration and oxidative damage. No changes in these parameters were exhibited by D. villosus or after a chronic exposure of G. jazdzewskii to predation cues. Our results show that prey organisms are able to reconfigure their physiology to maintain increased metabolic rate under prolonged predator pressure and, at the same time, reduce oxidative damage as well as costs related to anti-oxidant defence.


Assuntos
Anfípodes , Comportamento Predatório , Adaptação Fisiológica , Animais , Sinais (Psicologia)
3.
J Therm Biol ; 89: 102529, 2020 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-32364975

RESUMO

Thermoregulation in patients suffering from multiple sclerosis (MS) is impaired and may result in either increases or decreases in body temperature. We have found that rat experimental autoimmune encephalitis (EAE), being a model of MS, is associated with body temperature disturbances as well. The purpose of the current study was to examine whether the altered body temperature in EAE-induced rats is due to either a deficit in thermoregulation or a controlled change in its set point. Subcutaneous injection of encephalitogenic emulsion into both pads of hind feet of the Lewis rats provoked EAE symptoms. Body temperature (Tb) of 6 rats was measured using biotelemetry system, and ambient temperature (Ta) preferred by 6 rats of another group was analyzed using thermal gradient system. Symptoms of EAE started 11 days postinjection and progressed quickly, culminating in a complete paralysis in rats placed in the gradient, which was associated with behavioural fever (accordingly, selected Ta raised to as much as 32.8 ± 0.5 °C vs 27.2 ± 0.6 °C in control rats). On the other hand, EAE rats, placed at a constant Ta of 24 °C, were able to generate fever (Tb of 37.8 ± 0.1 °C) at the start of the illness and then paralysis compromised fever (most likely due to an impairment of thermogenesis), which, surprisingly, resulted in recovery. We conclude that EAE onset in rats is associated with fever and its behavioural supporting leads to aggravation of the autoimmune neurotoxicity.


Assuntos
Regulação da Temperatura Corporal , Encefalomielite Autoimune Experimental/fisiopatologia , Animais , Masculino , Ratos , Ratos Endogâmicos Lew
4.
Artigo em Inglês | MEDLINE | ID: mdl-29721708

RESUMO

Exposure to electromagnetic field (EMF) induces physiological changes in organism that are observed at different levels-from biochemical processes to behavior. In this study, we evaluated the effect of EMF exposure (50 Hz, 7 mT) on cockroach's response to noxious heat, measured as the latency to escape from high ambient temperature. We also measured the levels of lipid peroxidation and glutathione content as markers of oxidative balance in cockroaches exposed to EMF. Our results showed that exposure to EMF for 24, 72 h and 7 days significantly increases the latency to escape from noxious heat. Malondialdehyde (MDA) levels increased significantly after 24-h EMF exposure and remained elevated up to 7 days of exposure. Glutathione levels significantly declined in cockroaches exposed to EMF for 7 days. These results demonstrate that EMF exposure is a considerable stress factor that affects oxidative state and heat perception in American cockroach.


Assuntos
Campos Eletromagnéticos , Temperatura Alta , Nociceptividade/fisiologia , Periplaneta/fisiologia , Adaptação Fisiológica/fisiologia , Animais , Glutationa/metabolismo , Peroxidação de Lipídeos/fisiologia , Masculino , Malondialdeído/metabolismo , Estresse Oxidativo/fisiologia , Fatores de Tempo
5.
Int J Hyperthermia ; 34(6): 824-833, 2018 09.
Artigo em Inglês | MEDLINE | ID: mdl-28974122

RESUMO

Transcriptional hypoxia-inducible factor-1α (HIF-1α) plays the fundamental role in adaptive processes in response to hypoxia. Specific HIF-1α target genes are involved in glycolysis, erythropoiesis and angiogenesis to promote survival. In our previous study we have demonstrated that naturally low body temperature of newborn rats protects them against damage due to perinatal hypoxia. Therefore, our experiments aimed at checking the effects of body temperature during simulated perinatal anoxia on subsequent changes of expression of HIF-1α and its specific target genes such as vascular endothelial growth factor (VEGF) and erythropoietin (EPO) in the rat brain. Two-day old Wistar rats were divided into three temperature groups: normothermic -33 °C, hyperthermic -37 °C and extremely hyperthermic -39 °C. The temperature was controlled 15 min before start and continued during 10 min of anoxia as well as for 2 h post-anoxia. HIF-1α was analysed by Western blot and immunofluorescence and mRNA levels of HIF-1α and its downstream genes (VEGF, EPO) were quantified by qRT-PCR. Thermal conditions during neonatal anoxia affected the hippocampal and neocortical level of HIF-1α protein. Physiological body temperature of newborn rats led to prominent accumulation of cerebral HIF-1α protein and significant upregulation of VEGF and EPO mRNA. In contrast, anoxia-induced HIF-1α activation at elevated body temperatures was less pronounced. Since HIF-1α and EPO have recently been regarded as promising therapeutical targets against brain lesions due to hypoxia/ischemia, presented data imply that in order to achieve a full effect of neuroprotection, the thermal conditions during and after the insult should be taken into consideration.


Assuntos
Encéfalo/efeitos dos fármacos , Subunidade alfa do Fator 1 Induzível por Hipóxia/metabolismo , Hipóxia/complicações , Animais , Hipóxia/patologia , Ratos , Ratos Wistar , Temperatura
6.
Proc Biol Sci ; 284(1849)2017 02 22.
Artigo em Inglês | MEDLINE | ID: mdl-28202816

RESUMO

Evolutionary pressures have made foraging behaviours highly efficient in many species. Eye movements during search present a useful instance of foraging behaviour in humans. We tested the efficiency of eye movements during search using homogeneous and heterogeneous arrays of line segments. The search target is visible in the periphery on the homogeneous array, but requires central vision to be detected on the heterogeneous array. For a compound search array that is heterogeneous on one side and homogeneous on the other, eye movements should be directed only to the heterogeneous side. Instead, participants made many fixations on the homogeneous side. By comparing search of compound arrays to an estimate of search performance based on uniform arrays, we isolate two contributions to search inefficiency. First, participants make superfluous fixations, sacrificing speed for a perceived (but not actual) gain in response certainty. Second, participants fixate the homogeneous side even more frequently than predicted by inefficient search of uniform arrays, suggesting they also fail to direct fixations to locations that yield the most new information.


Assuntos
Movimentos Oculares , Visão Ocular , Evolução Biológica , Fixação Ocular , Humanos , Estimulação Luminosa
7.
Postepy Hig Med Dosw (Online) ; 71(0): 380-397, 2017 May 09.
Artigo em Inglês | MEDLINE | ID: mdl-28513462

RESUMO

Metastatic tumours resistant to chemotherapy are the major cause of the clinical failure in the treatment of malignant diseases. It is observed often that drugs active against primary tumours do not exhibit the same efficacy towards metastatic tumour cells having modified signaling pathways. Among cellular factors involved in the development of the metastatic potential of multidrug resistant tumour cells are some oncoproteins, antiapoptotic proteins, mutated suppressor proteins, integrins and CD44 receptor. It was also demonstrated that numerous chemotherapeutics have the effect on the emergence of the metastatic potential and multidrug resistance (MDR) phenomenon of tumour cells. The results of numerous studies suggest that genes involved in the development of MDR and metastatic phenotype of tumour cells are regulated by the same signaling pathways. They lead to the activation of transcription factors e.g. HIF-1α, NF-κB, Ets1 and AP-1 controlling the expression of genes involved in the development of the metastatic potential of multidrug resistant tumour cells. The identification of key cellular factors responsible for the emergence of the metastatic potential of MDR tumour cells could lead to the development of new efficient strategies for the treatment of metastatic tumours resistant to the conventional chemotherapy.


Assuntos
Antineoplásicos/uso terapêutico , Resistencia a Medicamentos Antineoplásicos , Invasividade Neoplásica , Metástase Neoplásica , Neoplasias/patologia , Humanos , Neoplasias/tratamento farmacológico , Transdução de Sinais
8.
Biogerontology ; 17(4): 715-23, 2016 08.
Artigo em Inglês | MEDLINE | ID: mdl-26829940

RESUMO

Behavioral symptoms of sickness, such as fever and motor activity are a coordinated set of changes that develop during infection. The aim of study was to compare the sickness behaviour (SB) in healthy old and young rats treated with pyrogenic dose of endotoxin and to check their glutathione level. Before experimentation male Wistar rats were selected according to standard body mass, motor activity, and white blood cells count. Intraperitoneal injection of lipopolysaccharide (LPS) from E. coli was used to provoke SB. The level of liver glutathione, interleukin (IL) -6, deep body temperature (Tb) and motor activity were measured. Glutathione level in old and young rats did not differ significantly. In both young and old rats LPS administration provoked fever (the mean value of Tb was 38.06 ± 0.01 °C in old rats, and 38.19 ± 0.06 °C in young rats). LPS injection affected night-time activity in both groups (12 h averages were 1.56 ± 0.40 counts in old LPS-treated rats vs 2.74 ± 0.53 counts in not-treated old rats and 3.44 ± 0.60 counts for young LPS-treated vs 4.28 ± 0.57 counts for young not-treated rats). The injection of LPS provoked an elevation of plasma IL-6 concentration (from values below the lowest detectable standard in not-treated groups of animals to 6322.82 ± 537.00 pg/mL in old LPS-treated rats and 7415.62 ± 451.88 pg/mL in young LPS-treated rats). Based on these data, we conclude that good health of aged rats prevents decrease in the glutathione level. Old rats are still able to develop SB in response to pyrogenic dose of LPS, although its components have changed pattern compared to young animals.


Assuntos
Envelhecimento/metabolismo , Glutationa/metabolismo , Comportamento de Doença/efeitos dos fármacos , Comportamento de Doença/fisiologia , Lipopolissacarídeos/administração & dosagem , Fígado/metabolismo , Envelhecimento/efeitos dos fármacos , Animais , Comportamento Animal , Glutationa/efeitos dos fármacos , Fígado/efeitos dos fármacos , Masculino , Ratos , Ratos Wistar
9.
Int J Hyperthermia ; 32(2): 211-20, 2016.
Artigo em Inglês | MEDLINE | ID: mdl-26794834

RESUMO

Hypoxic-ischaemic brain injury involves increased oxidative stress. In asphyxiated newborns iron deposited in the brain catalyses formation of reactive oxygen species. Glutathione (GSH) and vitamin E are key factors protecting cells against such agents. Our previous investigation has demonstrated that newborn rats, showing physiological low body temperature as well as their hyperthermic counterparts injected with deferoxamine (DF) are protected against iron-mediated, delayed neurotoxicity of perinatal asphyxia. Therefore, we decided to study the effects of body temperature and DF on the antioxidant status of the brain in rats exposed neonatally to critical anoxia. Two-day-old newborn rats were exposed to anoxia in 100% nitrogen atmosphere for 10 min. Rectal temperature was kept at 33 °C (physiological to rat neonates), or elevated to the level typical of healthy adult rats (37 °C), or of febrile adult rats (39 °C). Half of the rats exposed to anoxia under extremely hyperthermic conditions (39 °C) were injected with DF. Cerebral concentrations of malondialdehyde (MDA, lipid peroxidation marker) and the levels of GSH and vitamin E were determined post-mortem, (1) immediately after anoxia, (2) 3 days, (3) 7 days, and (4) 2 weeks after anoxia. There were no post-anoxic changes in MDA, GSH and vitamin E concentrations in newborn rats kept at body temperature of 33 °C. In contrast, perinatal anoxia at elevated body temperatures intensified oxidative stress and depleted the antioxidant pool in a temperature-dependent manner. Both the depletion of antioxidants and lipid peroxidation were prevented by post-anoxic DF injection. The data support the idea that hyperthermia may extend perinatal anoxia-induced brain lesions.


Assuntos
Temperatura Corporal/fisiologia , Encéfalo/metabolismo , Glutationa/metabolismo , Hipóxia/metabolismo , Malondialdeído/metabolismo , Vitamina E/metabolismo , Animais , Animais Recém-Nascidos , Encéfalo/efeitos dos fármacos , Desferroxamina/farmacologia , Feminino , Hipertermia Induzida , Masculino , Ratos , Ratos Wistar
10.
Int J Hyperthermia ; 31(7): 793-9, 2015.
Artigo em Inglês | MEDLINE | ID: mdl-26367316

RESUMO

PURPOSE: Glutathione constitutes the first line of the cellular defence mechanism against oxidative stress, and according to published data it is required by a number of factors that are involved in fever mechanism. The aim of the present study was to investigate whether or not glutathione deficiency can modulate a course of the fever induced by endotoxin (LPS). MATERIAL AND METHODS: Intraperitoneal injection of LPS from Escherichia coli was used to provoke fever in Wistar rats. The level of liver glutathione was decreased by administration of phorone (Pho). Deep body temperature (Tb) in free running rats was recorded using a biotelemetry system. The concentration of TNF-α was estimated. Next, the supplementation of TNF-α was done using recombinant rat TNF-α. RESULTS: Animals with decreased glutathione level responded with diminished fever after LPS injection (average Tb in Pho/LPS-treated and oil/LPS-treated animals were 36.90° ± 0.10 °C and 37.80° ± 0.15 °C, respectively). This response was accompanied by a significant attenuation of LPS-induced increase in TNF-α concentration (in the Pho/LPS-treated group it was 10.68 pg/mL ± 2.24, vs. 113.35 pg/mL ± 13.93 in oil/LPS-treated rats). Supplementation with TNF-α partially restored fever. CONCLUSION: Based on these data, we conclude that glutathione deficiency modifies the LPS-induced fever, in a TNF-α related manner.


Assuntos
Febre/fisiopatologia , Glutationa/deficiência , Lipopolissacarídeos/toxicidade , Animais , Temperatura Corporal , Febre/etiologia , Glutationa/metabolismo , Cetonas/farmacologia , Fígado/metabolismo , Ratos , Fator de Necrose Tumoral alfa/sangue
11.
Cortex ; 171: 178-193, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-38007862

RESUMO

Performance in visual search tasks is frequently summarised by "search slopes" - the additional cost in reaction time for each additional distractor. While search tasks with a shallow search slopes are termed efficient (pop-out, parallel, feature), there is no clear dichotomy between efficient and inefficient (serial, conjunction) search. Indeed, a range of search slopes are observed in empirical data. The Target Contrast Signal (TCS) Theory is a rare example of quantitative model that attempts to predict search slopes for efficient visual search. One study using the TCS framework has shown that the search slope in a double-feature search (where the target differs in both colour and shape from the distractors) can be estimated from the slopes of the associated single-feature searches. This estimation is done using a contrast combination model, and a collinear contrast integration model was shown to outperform other options. In our work, we extend TCS to a Bayesian multi-level framework. We investigate modelling using normal and shifted-lognormal distributions, and show that the latter allows for a better fit to previously published data. We run a new fully within-subjects experiment to attempt to replicate the key original findings, and show that overall, TCS does a good job of predicting the data. However, we do not replicate the finding that the collinear combination model outperforms the other contrast combination models, instead finding that it may be difficult to conclusively distinguish between them.


Assuntos
Atenção , Percepção Visual , Humanos , Teorema de Bayes , Tempo de Reação
12.
J Exp Psychol Gen ; 153(2): 495-510, 2024 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-38059965

RESUMO

We compare eye movement strategies across a range of different stimulus sets to test the prediction that eye movements are guided by expected information gain. When searching for a simple target that has been defined based on orientation, interindividual variability is high, and a large proportion of eye movements are directed to locations where peripheral vision would have been sufficient to determine whether the target was present there or not. In contrast, when searching for a target defined based on identity, eye movements are similar across individuals and highly efficient, being directed almost exclusively to the locations where central vision is most needed. The results suggest that for most people, the way they search for a simple feature (orientation) is not directly representative of the way they search for objects based on their identity. More generally, the results highlight that because humans are adaptable, contradictory theories can be accurate descriptions of search in particular contexts and individuals. For a complete and accurate account of human search behavior to be achieved, the conditions that shift us from one mode of behavior to another need to be part of our models. (PsycInfo Database Record (c) 2024 APA, all rights reserved).


Assuntos
Movimentos Oculares , Percepção Visual , Humanos , Visão Ocular
13.
R Soc Open Sci ; 11(4): 191816, 2024 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-38660602

RESUMO

How do we decide where to search for a target? Optimal search relies on first considering the relative informational value of different locations and then executing eye movements to the best options. However, many participants consistently move their eyes to locations that can be easily ascertained to neither contain the target nor provide new information about the target's location. Here, we asked whether this suboptimal search behaviour represents a specific example of a general tendency towards precrastination: starting sub-goals of a task before they are needed, and in so doing, spending longer time on doing the task than is necessary. To test this hypothesis, we asked 200 participants to do two tasks: retrieve two heavy buckets (one close and one far) and search for a line segment. Precrastination is defined as consistently picking up the closer bucket first, versus the more efficient strategy of picking up the farther bucket first. Search efficiency is the proportion of fixations directed to more cluttered regions of the search array. Based on the pilot data, we predicted an association of precrastination with inefficient search strategies. Personality inventories were also administered to identify stable characteristics associated with these strategies. In the final dataset, there was no clear association between search strategy and precrastination, nor did these correlate strongly with any of the personality measures collected. This article received in-principle acceptance (IPA) at Royal Society Open Science on 29 January 2020. The accepted Stage 1 version of the manuscript, not including results and discussion, may be found at https://osf.io/p2sjx. This preregistration was performed prior to data collection and analysis.

14.
Spectrochim Acta A Mol Biomol Spectrosc ; 309: 123795, 2024 Mar 15.
Artigo em Inglês | MEDLINE | ID: mdl-38184880

RESUMO

Diffuse large B-cell lymphoma (DLBCL), the most common non-Hodgkin's lymphoma in adults, is a genetically and metabolically heterogeneous group of aggressive malignancies. The complexity of their molecular composition and the variability in clinical presentation make clinical diagnosis and treatment selection a serious challenge. The challenge is therefore to quickly and correctly classify DLBCL cells. In this work, we show that Raman imaging is a tool with high diagnostic potential, providing unique information about the biochemical components of tumor cells and their metabolism. We present models of classification of lymphoma cells based on their Raman spectra. The models automatically and efficiently identify DLBCL cells and assign them to a given cell-of-origin (COO) subtype (activated B cell-like (ABC) or germinal center B cell-like (GCB)) or, respectively, to a comprehensive cluster classification (CCC) subtype (OxPhos/non-OxPhos). In addition, we describe each lymphoma subtype by its unique spectral profile, linking it to biochemical, genetic, or metabolic features.


Assuntos
Linfoma Difuso de Grandes Células B , Adulto , Humanos , Linfoma Difuso de Grandes Células B/diagnóstico , Linfoma Difuso de Grandes Células B/genética , Linfoma Difuso de Grandes Células B/tratamento farmacológico , Centro Germinativo/patologia
15.
Spectrochim Acta A Mol Biomol Spectrosc ; 314: 124173, 2024 Jun 05.
Artigo em Inglês | MEDLINE | ID: mdl-38520957

RESUMO

Acute lymphoblastic leukemia (ALL) and acute myeloid leukemia (AML) are the two most common hematologic malignancies, challenging to treat and associated with high recurrence and mortality rates. This work aims to identify specific Raman biomarkers of ALL cells with the KMT2A gene rearrangement (KMT2A-r), representing a highly aggressive subtype of childhood leukemia with a poor prognosis. The proposed approach combines the sensitivity and specificity of Raman spectroscopy with machine learning and allows us to distinguish not only myelo- and lymphoblasts but also discriminate B-cell precursor (BCP) ALL with KMT2A-r from other blasts of BCP-ALL. We have found that KMT2A-r ALL cells fixed with 0.5% glutaraldehyde exhibit a unique spectroscopic profile that enables us to identify this subtype from other leukemias and normal cells. Therefore, a rapid and label-free method was developed to identify ALL blasts with KMT2A-r based on the ratio of the two Raman bands assigned to phenylalanine - 1040 and 1008 cm-1. This is the first time that a particular group of leukemic cells has been identified in a label-free way. The identified biomarker can be used as a screening method in diagnostic laboratories or non-reference medical centers.


Assuntos
Leucemia Mieloide Aguda , Proteína de Leucina Linfoide-Mieloide , Humanos , Proteína de Leucina Linfoide-Mieloide/genética , Análise Espectral Raman , Leucemia Mieloide Aguda/diagnóstico , Leucemia Mieloide Aguda/genética , Leucemia Mieloide Aguda/patologia , Biomarcadores , Células-Tronco Hematopoéticas
16.
Biochim Biophys Acta Mol Cell Biol Lipids ; 1869(5): 159496, 2024 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-38649008

RESUMO

This work aims to understand better the mechanism of cellular processes accompanying the activation of human T cells and to develop a novel, fast, label-free approach to identify molecular biomarkers for this process. The standard methodology for confirming the activation state of T cells is based on flow cytometry and using antibodies recognizing activation markers. The method provide high specificity detection but may be susceptible to background staining or non-specific secondary antibody reactions. Here, we evaluated the potential of Raman-based molecular imaging in distinguishing non-activated and activated human T cells. Confocal Raman microscopy was performed on T cells followed by chemometrics to obtain comprehensive molecular information, while Stimulated Raman Scattering imaging was used to quickly provide high-resolution images of selected cellular components of activated and non-activated cells. For the first time, carotenoids, lipids, and proteins were shown to be important biomarkers of T-cell activation. We found that T-cell activation was accompanied by lipid accumulation and loss of carotenoid content. Our findings on the biochemical, morphological, and structural changes associated with activated mature T cells provide insights into the molecular changes that occur during therapeutic manipulation of the immune response. The methodology for identifying activated T cells is based on a novel imaging method and supervised and unsupervised chemometrics. It unambiguously identifies specific and unique molecular changes without the need for staining, fixation, or any other sample preparation.


Assuntos
Biomarcadores , Carotenoides , Metabolismo dos Lipídeos , Ativação Linfocitária , Análise Espectral Raman , Linfócitos T , Humanos , Carotenoides/metabolismo , Ativação Linfocitária/imunologia , Linfócitos T/metabolismo , Linfócitos T/imunologia , Análise Espectral Raman/métodos , Biomarcadores/metabolismo , Proteínas/metabolismo
17.
Biology (Basel) ; 12(10)2023 Sep 30.
Artigo em Inglês | MEDLINE | ID: mdl-37887008

RESUMO

This review discusses the transformative potential of integrating multi-omics data and artificial intelligence (AI) in advancing horticultural research, specifically plant phenotyping. The traditional methods of plant phenotyping, while valuable, are limited in their ability to capture the complexity of plant biology. The advent of (meta-)genomics, (meta-)transcriptomics, proteomics, and metabolomics has provided an opportunity for a more comprehensive analysis. AI and machine learning (ML) techniques can effectively handle the complexity and volume of multi-omics data, providing meaningful interpretations and predictions. Reflecting the multidisciplinary nature of this area of research, in this review, readers will find a collection of state-of-the-art solutions that are key to the integration of multi-omics data and AI for phenotyping experiments in horticulture, including experimental design considerations with several technical and non-technical challenges, which are discussed along with potential solutions. The future prospects of this integration include precision horticulture, predictive breeding, improved disease and stress response management, sustainable crop management, and exploration of plant biodiversity. The integration of multi-omics and AI holds immense promise for revolutionizing horticultural research and applications, heralding a new era in plant phenotyping.

18.
Spectrochim Acta A Mol Biomol Spectrosc ; 292: 122408, 2023 May 05.
Artigo em Inglês | MEDLINE | ID: mdl-36812801

RESUMO

Leukemias are a remarkably diverse group of malignancies originating from abnormal progenitor cells in the bone marrow. Leukemia subtypes are classified according to the cell type that has undergone neoplastic transformation using demanding and time-consuming methods. Alternative is Raman imaging that can be used both for living and fixed cells. However, considering the diversity of leukemic cell types and normal leukocytes, and the availability of different sample preparation protocols, the main objective of this work was to verify them for leukemia and normal blood cell samples for Raman imaging. The effect of glutaraldehyde (GA) fixation in a concentration gradient (0.1 %, 0.5 %, and 2.5 % GA) on the molecular structure of T-cell acute lymphoblastic leukemia (T-ALL) and peripheral blood mononuclear cells (PBMCs) was verified. Changes in the secondary structure of proteins within cells were indicated as the main effect of fixation, as shown by an increase in band intensity at 1041 cm-1, characteristic for in-plane δ(CH) deformation in phenylalanine (Phe). Different sensitivity of mononuclear and leukemic cells to fixation was observed. While the 0.1 % concentration of GA was too low to preserve the cell structure for an extended period of time, a GA concentration of 0.5 % seemed optimal for both normal and malignant cells. Chemical changes in PBMCs samples stored for 11 days were also investigated, which manifested in numerous modifications in the secondary structure of proteins and the content of nucleic acids. The impact of cell preculturing for 72 h after unbanking was verified, and there was no significant effect on the molecular structure of cells fixed with 0.5 % GA. In summary, the developed protocol for the preparation of samples for Raman imaging allows for the effective differentiation of fixed normal leukocytes from malignant T lymphoblasts.


Assuntos
Leucemia , Leucócitos Mononucleares , Humanos , Leucócitos , Leucemia/metabolismo , Diferenciação Celular
19.
Atten Percept Psychophys ; 84(6): 1874-1885, 2022 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-35819714

RESUMO

Some spatial layouts may suit our visual search habits better than others. We compared eye movements during search across three spatial configurations. Participants searched for a line segment oriented 45∘ to the right. Variation in the orientation of distractor line segments determines the extent to which this target would be visible in peripheral vision: a target among homogeneous distractors is highly visible, while a target among heterogeneous distractors requires central vision. When the search array is split into homogeneous and heterogeneous left and right halves, a large proportion of fixations are "wasted" on the homogeneous half, leading to slower search times. We compared this pattern to two new configurations. In the first, the array was split into upper and lower halves. During a passive viewing baseline condition, we observed biases to look both at the top half and also at the hetergeneous region first. Both of these biases were weaker during active search, despite the fact that the heterogeneous bias would have led to improvements in efficiency if it had been retained. In the second experiment, patches of more or less heterogeneous line segments were scattered across the search space. This configuration allows for more natural, spatially distributed scanpaths. Participants were more efficient and less variable relative to the left/right configuration. The results are consistent with the idea that visual search is associated with a distributed sequence of fixations, guided only loosely by the potential visibility of the target in different regions of the scene.


Assuntos
Movimentos Oculares , Reconhecimento Visual de Modelos , Hábitos , Humanos , Visão Ocular
20.
Oxid Med Cell Longev ; 2022: 1031211, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35746959

RESUMO

Studies reported evidence for opposite effects of extremely low-frequency electromagnetic field (EMF): harmful, including the oxidative stress induction, and beneficial, such as the activation of antioxidant defense. People's exposure to EMF is often repeated or prolonged, and it is important to consider the cumulative effect of such kind of exposure on the organism. If changes evoked by repeated exposure to EMF are permanent, responsiveness to other stress factors can be modified. The aims of our study were (1) to evaluate changes in the levels of oxidative stress and antioxidant defense markers in the prefrontal cortex of adult rats after repeated exposure to 1 and 7 mT EMF and (2) to assess whether repeated EMF exposure can modify oxidative/antioxidative status in response to other stress factors. Rats were exposed to EMF 1 h/day for 7 days, one, twice, or three times. After each exposure, 8-isoprostanes, protein carbonyl groups, and the total antioxidant capacity were assessed. Part of the animals, after EMF treatment, was exposed to another stress factor-open field. Results showed that repeated exposure changed the oxidative/antioxidative status depending on the intensity of the EMF and the number of exposures. 1 mT EMF created weak changes in the oxidative status in the brain; however, 7 mT EMF moved the balance to a clearly higher level. The changes in the oxidative status after 1 mT EMF were enough to reduce, and after 7 mT EMF to intensify oxidative processes in response to the next stress. We concluded that the organism might adapt to "weak" EMF, while "strong" EMF exceeds the adaptive capacity of the organism and sensitizes it to subsequent stress, and thus may modulate vulnerability to diseases. Our results also provide new insights into the possible therapeutic properties of the magnetic field, as 1 mT EMF appears to have a potentially protective impact on the brain.


Assuntos
Antioxidantes , Campos Eletromagnéticos , Animais , Antioxidantes/farmacologia , Encéfalo/metabolismo , Campos Eletromagnéticos/efeitos adversos , Humanos , Oxirredução , Estresse Oxidativo , Ratos
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