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1.
Metab Eng ; 35: 114-120, 2016 May.
Artigo em Inglês | MEDLINE | ID: mdl-26912312

RESUMO

Excellent thermal and operational stabilities of thermophilic enzymes can greatly increase the applicability of biocatalysis in various industrial fields. However, thermophilic enzymes are generally incompatible with thermo-labile substrates, products, and cofactors, since they show the maximal activities at high temperatures. Despite their pivotal roles in a wide range of enzymatic redox reactions, NAD(P)(+) and NAD(P)H exhibit relatively low stabilities at high temperatures, tending to be a major obstacle in the long-term operation of biocatalytic chemical manufacturing with thermophilic enzymes. In this study, we constructed an in vitro artificial metabolic pathway for the salvage synthesis of NAD(+) from its degradation products by the combination of eight thermophilic enzymes. The enzymes were heterologously produced in recombinant Escherichia coli and the heat-treated crude extracts of the recombinant cells were directly used as enzyme solutions. When incubated with experimentally optimized concentrations of the enzymes at 60°C, the NAD(+) concentration could be kept almost constant for 15h.


Assuntos
Escherichia coli , Engenharia Metabólica , NAD , Escherichia coli/genética , Escherichia coli/metabolismo , NAD/biossíntese , NAD/genética
2.
Biotechnol Bioeng ; 112(1): 189-96, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25065559

RESUMO

In vitro reconstitution of an artificial metabolic pathway is an emerging approach for the biocatalytic production of industrial chemicals. However, several enzymes have to be separately prepared (and purified) for the construction of an in vitro metabolic pathway, thereby limiting the practical applicability of this approach. In this study, genes encoding the nine thermophilic enzymes involved in a non-ATP-forming chimeric glycolytic pathway were assembled in an artificial operon and co-expressed in a single recombinant Escherichia coli strain. Gene expression levels of the thermophilic enzymes were controlled by their sequential order in the artificial operon. The specific activities of the recombinant enzymes in the cell-free extract of the multiple-gene-expression E. coli were 5.0-1,370 times higher than those in an enzyme cocktail prepared from a mixture of single-gene-expression strains, in each of which a single one of the nine thermophilic enzymes was overproduced. Heat treatment of a crude extract of the multiple-gene-expression cells led to the denaturation of indigenous proteins and one-step preparation of an in vitro synthetic pathway comprising only a limited number of thermotolerant enzymes. Coupling this in vitro pathway with other thermophilic enzymes including the H2 O-forming NADH oxidase or the malate/lactate dehydrogenase facilitated one-pot conversion of glucose to pyruvate or lactate, respectively.


Assuntos
Proteínas de Bactérias/metabolismo , Enzimas/metabolismo , Escherichia coli/genética , Engenharia Metabólica/métodos , Redes e Vias Metabólicas/genética , Proteínas de Bactérias/química , Proteínas de Bactérias/genética , Estabilidade Enzimática , Enzimas/química , Enzimas/genética , Escherichia coli/metabolismo , Genes Bacterianos/genética , Temperatura Alta
3.
Chem Senses ; 39(2): 91-105, 2014 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-24252998

RESUMO

Generally, odor qualities are evaluated via sensory tests in which predefined criteria are assessed by panelists and stochastically analyzed to reduce human inconsistencies. Because this method requires multiple, well-trained human subjects, a more convenient approach is required to enable predictions of odor qualities. In this article, we propose an approach involving linking internal states of the olfactory system with perceptual characteristics. In the study, the glomerular responses of rats were taken to represent internal olfactory system states. Similarities between the glomerular responses of rats were quantified by correlations between glomerular activity patterns, overlap rate of strongly activated part across glomerular activity patterns, and the similarity between histograms of the strength of activity. These indices were then compared with perceptual similarities measured from human subjects in sensory tests. The results of experiments involving 22 odorants showed medium strength correlations between each index and perceptual similarity. In addition, when the 3 indices were combined using their Euclidean distance, we observed middle to high correlations (r = 0.65-0.79) to human perceptual similarity. We also report the results of our use of a machine learning technique to classify the odorants into a similar and dissimilar category. Although the correct rate of classification varied from 33.3% to 92.9%, these results support the feasibility of linking the glomerular responses of rats to human perception.


Assuntos
Bulbo Olfatório/fisiologia , Percepção Olfatória/fisiologia , Animais , Inteligência Artificial , Cibernética , Desoxiglucose/metabolismo , Humanos , Modelos Neurológicos , Odorantes , Ratos , Olfato/fisiologia , Especificidade da Espécie
4.
Microb Cell Fact ; 13: 149, 2014 Nov 07.
Artigo em Inglês | MEDLINE | ID: mdl-25376163

RESUMO

BACKGROUND: Media containing yeast extracts and other complex raw materials are widely used for the cultivation of microorganisms. However, variations in the specific nutrient composition can occur, due to differences in the complex raw material ingredients and in the production of these components. These lot-to-lot variations can affect growth rate, product yield and product quality in laboratory investigations and biopharmaceutical production processes. In the FDA's Process Analytical Technology (PAT) initiative, the control and assessment of the quality of critical raw materials is one key aspect to maintain product quality and consistency. In this study, the Respiration Activity Monitoring System (RAMOS) was used to evaluate the impact of different yeast extracts and commercial complex auto-induction medium lots on metabolic activity and product yield of four recombinant Escherichia coli variants encoding different enzymes. RESULTS: Under non-induced conditions, the oxygen transfer rate (OTR) of E. coli was not affected by a variation of the supplemented yeast extract lot. The comparison of E. coli cultivations under induced conditions exhibited tremendous differences in OTR profiles and volumetric activity for all investigated yeast extract lots of different suppliers as well as lots of the same supplier independent of the E. coli variant. Cultivation in the commercial auto-induction medium lots revealed the same reproducible variations. In cultivations with parallel offline analysis, the highest volumetric activity was found at different cultivation times. Only by online monitoring of the cultures, a distinct cultivation phase (e.g. glycerol depletion) could be detected and chosen for comparable and reproducible offline analysis of the yield of functional product. CONCLUSIONS: This work proves that cultivations conducted in complex media may be prone to significant variation in final product quality and quantity if the quality of the raw material for medium preparation is not thoroughly checked. In this study, the RAMOS technique enabled a reliable and reproducible screening and phenotyping of complex raw material lots by online measurement of the respiration activity. Consequently, complex raw material lots can efficiently be assessed if the distinct effects on culture behavior and final product quality and quantity are visualized.


Assuntos
Meios de Cultura/análise , Meios de Cultura/química , Escherichia coli/crescimento & desenvolvimento , Controle de Qualidade
5.
Appl Microbiol Biotechnol ; 98(13): 5925-35, 2014 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-24927695

RESUMO

Rhodococcus opacus B-4 cells are adhesive to and even dispersible in water-immiscible hydrocarbons owing to their highly lipophilic nature. In this study, we focused on the high operational stability of thermophilic enzymes and applied them to a biocatalytic conversion in an organic reaction medium using R. opacus B-4 as a lipophilic capsule of enzymes to deliver them into the organic medium. A novel thermo- and organic-solvent-tolerant ene reductase, which can catalyze the enantioselective reduction of ketoisophorone to (6R)-levodione, was isolated from Geobacillus sp. 30, and the gene encoding the enzyme was heterologously expressed in R. opacus B-4. Another thermophilic enzyme which catalyzes NAD(+)-dependent dehydrogenation of cyclohexanol was identified from the gene-expression library of Thermus thermophilus and the gene was coexpressed in R. opacus B-4 for cofactor regeneration. While the recombinant cells were not viable in the mixture due to high reaction temperature, 634 mM of (6R)-levodione could be produced with an enantiopurity of 89.2 % ee by directly mixing the wet cells of the recombinant R. opacus with a mixture of ketoisophorone and cyclohexanol at 50 °C. The conversion rate observed with the heat-killed recombinant cells was considerably higher than that obtained with a cell-free enzyme solution, demonstrating that the accessibility between the substrates and enzymes could be improved by employing R. opacus cells as a lipophilic enzyme capsule. These results imply that a combination of thermophilic enzymes and lipophilic cells can be a promising approach for the biocatalytic production of water-insoluble chemicals.


Assuntos
Cicloexanonas/metabolismo , Expressão Gênica , Geobacillus/enzimologia , Oxirredutases/isolamento & purificação , Oxirredutases/metabolismo , Rhodococcus/metabolismo , Clonagem Molecular , Cicloexanóis/metabolismo , DNA Bacteriano/química , DNA Bacteriano/genética , Geobacillus/genética , Temperatura Alta , Dados de Sequência Molecular , Oxirredutases/genética , Rhodococcus/genética , Análise de Sequência de DNA , Thermus thermophilus/enzimologia , Thermus thermophilus/genética
6.
Metab Eng ; 20: 84-91, 2013 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-24055789

RESUMO

The heat treatment of recombinant mesophiles having heterologous thermotolerant enzymes results in the one-step preparation of highly selective biocatalytic modules. The assembly of these modules enables us to readily construct an artificial metabolic pathway in vitro. In this work, we constructed a non-natural, cofactor-balanced, and oxygen-insensitive pathway for n-butanol production using 16 thermotolerant enzymes. The whole pathway was divided into 7 parts, in each of which NAD(H)-dependent enzymes were assigned to be the last step, and the fluxes through each part were spectrophotometrically determined. This real-time monitoring technique enabled the experimental optimization of enzyme level to achieve a desired production rate. Through the optimized pathway, n-butanol could be produced from glucose with a molar yield of 82% at a rate of 8.2 µmol l(-1) min(-1). Our approach would be widely applicable to the rational optimization of artificial metabolic pathways as well as to the in vitro production of value-added biomolecules.


Assuntos
1-Butanol/metabolismo , Acetobacter/enzimologia , Proteínas de Bactérias/química , Proteínas de Bactérias/metabolismo , Glucose/metabolismo , Thermus thermophilus/enzimologia , 1-Butanol/química , Sistema Livre de Células/química , Sistema Livre de Células/enzimologia
7.
Appl Environ Microbiol ; 79(6): 1996-2001, 2013 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-23335777

RESUMO

The heat treatment of recombinant mesophilic cells having heterologous thermophilic enzymes results in the denaturation of indigenous mesophilic enzymes and the elimination of undesired side reactions; therefore, highly selective whole-cell catalysts comparable to purified enzymes can be readily prepared. However, the thermolysis of host cells leads to the heat-induced leakage of thermophilic enzymes, which are produced as soluble proteins, limiting the exploitation of their excellent stability in repeated and continuous reactions. In this study, Escherichia coli cells having the thermophilic fumarase from Thermus thermophilus (TtFTA) were treated with glutaraldehyde to prevent the heat-induced leakage of the enzyme, and the resulting cells were used as a whole-cell catalyst in repeated and continuous reactions. Interestingly, although electron microscopic observations revealed that the cellular structure of glutaraldehyde-treated E. coli was not apparently changed by the heat treatment, the membrane permeability of the heated cells to relatively small molecules (up to at least 3 kDa) was significantly improved. By applying the glutaraldehyde-treated E. coli having TtFTA to a continuous reactor equipped with a cell-separation membrane filter, the enzymatic hydration of fumarate to malate could be operated for more than 600 min with a molar conversion yield of 60% or higher.


Assuntos
Enzimas/metabolismo , Escherichia coli/genética , Escherichia coli/metabolismo , Fumarato Hidratase/genética , Fumarato Hidratase/metabolismo , Engenharia Metabólica , Thermus thermophilus/enzimologia , Biotecnologia/métodos , Biotransformação , Escherichia coli/efeitos dos fármacos , Escherichia coli/efeitos da radiação , Fixadores/metabolismo , Fumaratos/metabolismo , Glutaral/metabolismo , Temperatura Alta , Malatos/metabolismo , Microscopia Eletrônica , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Thermus thermophilus/genética
8.
Microb Cell Fact ; 12: 91, 2013 Oct 07.
Artigo em Inglês | MEDLINE | ID: mdl-24099461

RESUMO

BACKGROUND: Metabolic engineering has emerged as a practical alternative to conventional chemical conversion particularly in biocommodity production processes. However, this approach is often hampered by as yet unidentified inherent mechanisms of natural metabolism. One of the possible solutions for the elimination of the negative effects of natural regulatory mechanisms on artificially engineered metabolic pathway is to construct an in vitro pathway using a limited number of enzymes. Employment of thermostable enzymes as biocatalytic modules for pathway construction enables the one-step preparation of catalytic units with excellent selectivity and operational stability. Acetyl-CoA is a central precursor involved in the biosynthesis of various metabolites. In this study, an in vitro pathway to convert pyruvate to acetyl-CoA was constructed and applied to N-acetylglutamate production. RESULTS: A bypassed pyruvate decarboxylation pathway, through which pyruvate can be converted to acetyl-CoA, was constructed by using a coupled enzyme system consisting of pyruvate decarboxylase from Acetobacter pasteurianus and the CoA-acylating aldehyde dehydrogenase from Thermus thermophilus. To demonstrate the applicability of the bypassed pathway for chemical production, a cofactor-balanced and CoA-recycling synthetic pathway for N-acetylglutamate production was designed by coupling the bypassed pathway with the glutamate dehydrogenase from T. thermophilus and N-acetylglutamate synthase from Thermotoga maritima. N-Acetylglutamate could be produced from an equimolar mixture of pyruvate and α-ketoglutarate with a molar yield of 55% through the synthetic pathway consisting of a mixture of four recombinant E. coli strains having either one of the thermostable enzymes. The overall recycling number of CoA was calculated to be 27. CONCLUSIONS: Assembly of thermostable enzymes enables the flexible design and construction of an in vitro metabolic pathway specialized for chemical manufacture. We herein report the in vitro construction of a bypassed pathway capable of an almost stoichiometric conversion of pyruvate to acetyl-CoA. This pathway is potentially applicable not only to N-acetylglutamate production but also to the production of a wide range of acetyl-CoA-derived metabolites.


Assuntos
Glutamatos/metabolismo , Engenharia Metabólica/métodos , Ácido Pirúvico/metabolismo , Descarboxilação , Glutamatos/genética , Redes e Vias Metabólicas
9.
Methods ; 56(3): 418-23, 2012 Mar.
Artigo em Inglês | MEDLINE | ID: mdl-22100493

RESUMO

Chromosome identification using Chinese hamster ovary (CHO) genomic bacterial artificial chromosome (BAC) clones has the potential to contribute to the analysis and understanding of chromosomal instability of CHO cell lines and to improve our understanding of chromosome organization during the establishment of recombinant CHO cells. Fluorescence in situ hybridization imaging using BAC clones as probes (BAC-FISH) can provide valuable information for the identification of chromosomes. In this study, we identified chromosomes and analyzed the chromosome rearrangement in CHO cells using BAC-FISH methods.


Assuntos
Aberrações Cromossômicas , Cromossomos Artificiais Bacterianos , Hibridização in Situ Fluorescente/métodos , Animais , Células CHO , Cricetinae , Cricetulus
10.
Appl Microbiol Biotechnol ; 97(16): 7337-44, 2013 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-23604563

RESUMO

Uroporphyrinogen III (urogen III) was produced from 5-aminolevulinic acid (ALA), which is a common precursor of all metabolic tetrapyrroles, using thermostable ALA dehydratase (ALAD), porphobilinogen deaminase (PBGD), and urogen III synthase (UROS) of Thermus thermophilus HB8. The UROS-coding gene (hemD2) of T. thermophilus HB8 was identified by examining the gene product for its ability to produce urogen III in a coupled reaction with ALAD and PBGD. The genes encoding ALAD, PBGD, and UROS were separately expressed in Escherichia coli BL21 (DE3). To inactivate indigenous mesophilic enzymes, the E. coli transformants were heated at 70 °C for 10 min. The bioconversion of ALA to urogen III was performed using a mixture of heat-treated E. coli transformants expressing ALAD, PBGD, and UROS at a cell ratio of 1:1:1. When the total cell concentration was 7.5 g/l, the mixture of heat-treated E. coli transformants could convert about 88 % 10 mM ALA to urogen III at 60 °C after 4 h. Since eight ALA molecules are required for the synthesis of one porphyrin molecule, approximately 1.1 mM (990 mg/l) urogen III was produced from 10 mM ALA. The present technology has great potential to supply urogen III for the biocatalytic production of vitamin B12.


Assuntos
Ácido Aminolevulínico/metabolismo , Escherichia coli/metabolismo , Thermus thermophilus/enzimologia , Uroporfirinogênios/metabolismo , Biotecnologia/métodos , Escherichia coli/genética , Temperatura Alta , Hidroximetilbilano Sintase/genética , Engenharia Metabólica/métodos , Redes e Vias Metabólicas/genética , Sintase do Porfobilinogênio/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Thermus thermophilus/genética , Uroporfirinogênio III Sintetase/genética
11.
Appl Microbiol Biotechnol ; 97(13): 5731-41, 2013 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-23615744

RESUMO

The process of establishing high-producing cell lines for the manufacture of therapeutic proteins is usually both time-consuming and laborious due to the low probability of obtaining high-producing clones from a pool of transfected cells and slow cell growth under the strong selective pressure of screening to identify high-producing clones. We present a novel method to rapidly generate more high-producing cells by accelerating transgene amplification. A small interfering RNA (siRNA) expression vector against ataxia telangiectasia and Rad3 related (ATR), a cell cycle checkpoint kinase, was transfected into Chinese hamster ovary (CHO) cells. The influences of ATR downregulation on gene amplification and the productivity were investigated in CHO cells producing green fluorescent protein (GFP) and secreting monoclonal antibody (mAb). The ATR-downregulated cells showed up to a 6-fold higher ratio of GFP-positive cells than that of the control cell pool. Moreover, the downregulated mAb-producing cells had about a 4-fold higher specific production rate and a 3-fold higher volumetric productivity as compared with the mock cells. ATR-downregulated cells showed a much faster increase in transgene copy numbers during the gene amplification process via methotrexate (MTX) treatment in both GFP- and mAb-producing cells. Our results suggest that a pool of high-producing cells can be more rapidly generated by ATR downregulation as compared with conventional gene amplification by MTX treatment. This novel method may be a promising approach to reduce time and labor in the process of cell line development.


Assuntos
Biotecnologia/métodos , Pontos de Checagem do Ciclo Celular , Engenharia Genética , Transgenes , Animais , Células CHO , Proteínas de Ciclo Celular/antagonistas & inibidores , Proteínas de Ciclo Celular/genética , Cricetulus , Expressão Gênica , Inativação Gênica , Genes Reporter , Proteínas de Fluorescência Verde/genética , Proteínas de Fluorescência Verde/metabolismo , Dados de Sequência Molecular , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Análise de Sequência de DNA
12.
Biotechnol Bioeng ; 109(6): 1357-67, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22012683

RESUMO

Chinese hamster ovary (CHO) cells have frequently been used in biotechnology for many years as a mammalian host cell platform for cloning and expressing genes of interest. A detailed physical chromosomal map of the CHO DG44 cell line was constructed by fluorescence in situ hybridization (FISH) imaging using randomly selected 303 BAC clones as hybridization probes (BAC-FISH). The two longest chromosomes were completely paired chromosomes; other chromosomes were partly deleted or rearranged. The end sequences of 624 BAC clones, including 287 mapped BAC clones, were analyzed and 1,119 informative BAC end sequences were obtained. Among 303 mapped BAC clones, 185 clones were used for BAC-FISH analysis of CHO K1 chromosomes and 94 clones for primary Chinese hamster lung cells. Based on this constructed physical map and end sequences, the chromosome rearrangements between CHO DG44, CHO K1, and primary Chinese hamster cells were investigated. Among 20 CHO chromosomes, eight were conserved without large rearrangement in CHO DG44, CHO K1, and primary Chinese hamster cells. This result suggested that these chromosomes were stable and essential in CHO cells and supposedly conserved in other CHO cell lines.


Assuntos
Cromossomos , Cricetulus/genética , Rearranjo Gênico , Mapeamento Físico do Cromossomo , Animais , Células CHO , Cricetinae , Hibridização in Situ Fluorescente
13.
Microb Cell Fact ; 11: 120, 2012 Sep 06.
Artigo em Inglês | MEDLINE | ID: mdl-22950411

RESUMO

BACKGROUND: The integration of biotechnology into chemical manufacturing has been recognized as a key technology to build a sustainable society. However, the practical applications of biocatalytic chemical conversions are often restricted due to their complexities involving the unpredictability of product yield and the troublesome controls in fermentation processes. One of the possible strategies to overcome these limitations is to eliminate the use of living microorganisms and to use only enzymes involved in the metabolic pathway. Use of recombinant mesophiles producing thermophilic enzymes at high temperature results in denaturation of indigenous proteins and elimination of undesired side reactions; consequently, highly selective and stable biocatalytic modules can be readily prepared. By rationally combining those modules together, artificial synthetic pathways specialized for chemical manufacturing could be designed and constructed. RESULTS: A chimeric Embden-Meyerhof (EM) pathway with balanced consumption and regeneration of ATP and ADP was constructed by using nine recombinant E. coli strains overproducing either one of the seven glycolytic enzymes of Thermus thermophilus, the cofactor-independent phosphoglycerate mutase of Pyrococcus horikoshii, or the non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase of Thermococcus kodakarensis. By coupling this pathway with the Thermus malate/lactate dehydrogenase, a stoichiometric amount of lactate was produced from glucose with an overall ATP turnover number of 31. CONCLUSIONS: In this study, a novel and simple technology for flexible design of a bespoke metabolic pathway was developed. The concept has been testified via a non-ATP-forming chimeric EM pathway. We designated this technology as "synthetic metabolic engineering". Our technology is, in principle, applicable to all thermophilic enzymes as long as they can be functionally expressed in the host, and thus would be potentially applicable to the biocatalytic manufacture of any chemicals or materials on demand.


Assuntos
Engenharia Metabólica , Trifosfato de Adenosina/metabolismo , Escherichia coli/metabolismo , Glucose/metabolismo , Gliceraldeído-3-Fosfato Desidrogenases/genética , Gliceraldeído-3-Fosfato Desidrogenases/metabolismo , Concentração de Íons de Hidrogênio , Ácido Láctico/metabolismo , Malato Desidrogenase/genética , Malato Desidrogenase/metabolismo , Fosfoglicerato Mutase/genética , Fosfoglicerato Mutase/metabolismo , Pyrococcus/enzimologia , Temperatura , Thermococcus/enzimologia , Thermus thermophilus/enzimologia
14.
Appl Microbiol Biotechnol ; 93(2): 555-63, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-21814805

RESUMO

Nowadays, majority of vanillin supplied to the world market is chemically synthesized from a petroleum-based raw material, raising a concern among the consumers regarding the product safety. In this study, an organic solvent-tolerant Brevibacillus agri 13 previously reported for a strong predilectic property was utilized as a whole-cell biocatalyst for bioproduction of vanillin from isoeugenol (IG). B. agri 13 is the first biocatalyst reported for bioproduction of vanillin at a temperature as high as 45°C. Both pH and temperature were found to affect vanillin production significantly. An extreme level of organic solvent tolerance of B. agri 13 allowed us to utilize it in a biphasic system using organic solvents generally considered as highly toxic to most bacteria. With an addition of butyl acetate at 30% (v/v) as an organic second phase, toxicity of IG exerted onto the biocatalyst was reduced dramatically while faster and more efficient vanillin production was obtained (1.7 g/L after 48 h with 27.8% molar conversion).


Assuntos
Benzaldeídos/metabolismo , Biotecnologia/métodos , Brevibacillus/metabolismo , Acetatos/metabolismo , Tolerância a Medicamentos , Eugenol/análogos & derivados , Eugenol/metabolismo , Eugenol/toxicidade , Concentração de Íons de Hidrogênio , Solventes/metabolismo , Solventes/toxicidade , Temperatura
15.
Appl Microbiol Biotechnol ; 94(1): 69-80, 2012 Apr.
Artigo em Inglês | MEDLINE | ID: mdl-22205442

RESUMO

Improvement of glycosylation is one of the most important topics in the industrial production of therapeutic antibodies. We have focused on terminal sialylation with alpha-2,6 linkage, which is crucial for anti-inflammatory activity. In the present study, we have successfully cloned cDNA of beta-galactosyl alpha-2,6 sialyltransferase (ST6Gal I) derived from Chinese hamster ovary (CHO) cells regardless of reports that stated this was not endogenously expressed in CHO cells. After expressing cloned ST6Gal I in Escherichia coli, the transferase activity was confirmed by HPLC and lectin binding assay. Then, we applied ST6Gal I to alpha-2,6 sialylation of the recombinant antibody; the ST6Gal I expression vector was transfected into the CHO cell line producing a bispecific antibody. The N-glycosylation pattern of the antibody was estimated by HPLC and sialidase digestion. About 70% of the total N-linked oligosaccharide was alpha-2,6 sialylated in the transfected cell line whereas no sialylation was observed in the non-transfected cell line. The improvement of sialylation would be of practical importance for the industrial production of therapeutic antibodies.


Assuntos
Anticorpos Biespecíficos/metabolismo , Anticorpos Monoclonais Humanizados/metabolismo , Expressão Gênica , Imunoglobulina G/metabolismo , Ovário/enzimologia , Sialiltransferases/genética , Animais , Anticorpos Biespecíficos/genética , Anticorpos Monoclonais Humanizados/genética , Células CHO , Cricetinae/genética , Escherichia coli/genética , Escherichia coli/metabolismo , Feminino , Humanos , Imunoglobulina G/genética , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Sialiltransferases/metabolismo , Regulação para Cima , beta-D-Galactosídeo alfa 2-6-Sialiltransferase
16.
Appl Microbiol Biotechnol ; 95(2): 357-67, 2012 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-22555910

RESUMO

Oxygenases-based Escherichia coli whole-cell biocatalyst can be applied for catalysis of various commercially interesting reactions that are difficult to achieve with traditional chemical catalysts. However, substrates and products of interest are often toxic to E. coli, causing a disruption of cell membrane. Therefore, organic solvent-tolerant bacteria became an important tool for heterologous expression of such oxygenases. In this study, the organic solvent-tolerant Bacillus subtilis 3C5N was developed as a whole-cell biocatalyst for epoxidation of a toxic terminal alkene, 1-hexene. Comparing to other hosts tested, high level of tolerance towards 1-hexene and a moderately hydrophobic cell surface of B. subtilis 3C5N were suggested to contribute to its higher 1,2-epoxyhexane production. A systematic optimization of reaction conditions such as biocatalyst and substrate concentration resulted in a 3.3-fold increase in the specific rate. Co-expression of glucose dehydrogenase could partly restored NADPH-regenerating ability of the biocatalyst (up to 38 % of the wild type), resulting in approximately 53 % increase in specific rate representing approximately 22-fold increase in product concentration comparing to that obtained prior to an optimization.


Assuntos
Bacillus subtilis/enzimologia , Bacillus subtilis/metabolismo , Sistema Enzimático do Citocromo P-450/metabolismo , Compostos de Epóxi/metabolismo , Glucose 1-Desidrogenase/metabolismo , Hexanos/metabolismo , Bacillus subtilis/genética , Sistema Enzimático do Citocromo P-450/genética , DNA Bacteriano/química , DNA Bacteriano/genética , DNA Ribossômico/química , DNA Ribossômico/genética , Glucose 1-Desidrogenase/genética , Dados de Sequência Molecular , NADP/metabolismo , RNA Ribossômico 16S/genética , Análise de Sequência de DNA
17.
Biosci Biotechnol Biochem ; 76(9): 1758-64, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23006580

RESUMO

The replication region of the 111-kb circular plasmid pKNR from Rhodococcus opacus B-4 was identified. A PCR-based deletion analysis using the λ Red recombination technique followed by restriction digestion and PCR-amplification analyses revealed that a 2.5-kb fragment covering one putative open reading frame (ORF) was involved in the replication of pKNR. The product of this ORF showed significant similarity to a functionally unknown protein encoded in the replication region of the 70-kb circular plasmid of Clavibacter michiganensis and to ones in other bacterial large circular plasmids. These observations suggest that the product of the identified ORF and its orthologs can serve as novel replication proteins for large circular bacterial plasmids.


Assuntos
Sequência de Bases , Replicação do DNA , DNA Bacteriano/genética , Plasmídeos/genética , Rhodococcus/genética , Deleção de Sequência , Escherichia coli/genética , Interações Hidrofóbicas e Hidrofílicas , Dados de Sequência Molecular , Fases de Leitura Aberta , Plasmídeos/química , Recombinação Genética , Mapeamento por Restrição
18.
Chem Senses ; 36(5): 413-24, 2011 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-21343242

RESUMO

This paper proposes a neural network model for prediction of olfactory glomerular activity aimed at future application to the evaluation of odor qualities. The model's input is the structure of an odorant molecule expressed as a labeled graph, and it employs the graph kernel method to quantify structural similarities between odorants and the function of olfactory receptor neurons. An artificial neural network then converts odorant molecules into glomerular activity expressed in Gaussian mixture functions. The authors also propose a learning algorithm that allows adjustment of the parameters included in the model using a learning data set composed of pairs of odorants and measured glomerular activity patterns. We observed that the defined similarity between odorant structure has correlation of 0.3-0.9 with that of glomerular activity. Glomerular activity prediction simulation showed a certain level of prediction ability where the predicted glomerular activity patterns also correlate the measured ones with middle to high correlation in average for data sets containing 363 odorants.


Assuntos
Redes Neurais de Computação , Odorantes , Receptores Odorantes/metabolismo , Monoterpenos Acíclicos , Algoritmos , Simulação por Computador , Estrutura Molecular , Terpenos/metabolismo
19.
Appl Microbiol Biotechnol ; 87(2): 647-55, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20224941

RESUMO

Systematic screening of single-gene knockout collection of Escherichia coli BW25113 (the Keio collection) was performed to select mutants that could enhance the deethylation of 7-ethoxycoumarin catalyzed by CYP154A1. After 96-well plate high-throughput screening followed by test tube assays, four mutants (Delta cpxA, Delta gcvR, Delta glnL, and an unknown-gene-deleted one (Delta uk)) were able to increase the CYP154A1 activity by approximately 1.4-1.7 times compared with that of the control strain. When new mutants were constructed by disrupting individually the cpxA, gcvR, glnL, and uk genes in E. coli BW25113, three of them (Delta cpxA, Delta gcvR, and Delta glnL) showed high levels of CYP154A1 activity. However, the uk-disruptant failed to enhance the CYP154A1 activity, suggesting that the high CYP154A1 activity of the Delta uk mutant in the Keio collection was due to a spontaneous mutation in the chromosome. In-frame deletion mutants of Delta cpxA, Delta gcvR, and Delta glnL also exhibited high enzyme activity, and complementation of these mutations could decrease CYP154A1 activity. These results indicated that the enhancement of the enzyme activity was not caused by polar effects on their neighbor genes. To our knowledge, this is the first report on a genome-wide screening of the genes for deletion to improve the activity of a recombinant whole-cell biocatalyst.


Assuntos
Sistema Enzimático do Citocromo P-450/metabolismo , Proteínas de Escherichia coli/metabolismo , Escherichia coli/genética , Mutação , Cumarínicos/metabolismo , Sistema Enzimático do Citocromo P-450/genética , Enzimas , Escherichia coli/enzimologia , Escherichia coli/metabolismo , Proteínas de Escherichia coli/genética , Técnicas de Inativação de Genes
20.
Appl Microbiol Biotechnol ; 85(3): 535-42, 2010 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-19652963

RESUMO

The glycosylation pattern of a humanized anti-EGFRxanti-CD3 bispecific single-chain diabody with an Fc portion (hEx3-scDb-Fc) produced by recombinant Chinese hamster ovary cells was evaluated and compared with those of a recombinant humanized anti-IL-8 antibody (IgG1) and human serum IgG. N-Linked oligosaccharide structures were estimated by two-dimensional high-performance liquid chromatography and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. No sialylation was observed with purified hEx3-scDb-Fc and the anti-IL-8 antibody. From the analysis of neutral oligosaccharides, approximately more than 90% of the N-linked oligosaccharides of hEx3-scDb-Fc and the anti-IL-8 antibody were alpha-1,6-fucosylated. The galactosylated biantennary oligosaccharides comprise over 40% of the total N-linked oligosaccharides in both hEx3-scDb-Fc and the anti-IL-8 antibody. The fully galactosylated biantennary oligosaccharides from hEx3-scDb-Fc and the anti-IL-8 antibody accounted for only 10% of the N-linked; however, more than 20% of the N-linked oligosaccharides were fully galactosylated biantennary oligosaccharides in human serum IgG. The glycosylation pattern of hEx3-scDb-Fc was quite similar to that of the anti-IL-8 antibody.


Assuntos
Anticorpos Biespecíficos/metabolismo , Imunoglobulina G/metabolismo , Proteínas Recombinantes/metabolismo , Animais , Células CHO , Cromatografia Líquida de Alta Pressão , Cricetinae , Cricetulus , Glicosilação , Humanos , Espectrometria de Massas por Ionização e Dessorção a Laser Assistida por Matriz
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