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1.
J Chem Phys ; 160(21)2024 Jun 07.
Artigo em Inglês | MEDLINE | ID: mdl-38828812

RESUMO

CNDOL is an a priori, approximate Fockian for molecular wave functions. In this study, we employ several modes of singly excited configuration interaction (CIS) to model molecular excitation properties by using four combinations of the one electron operator terms. Those options are compared to the experimental and theoretical data for a carefully selected set of molecules. The resulting excitons are represented by CIS wave functions that encompass all valence electrons in the system for each excited state energy. The Coulomb-exchange term associated to the calculated excitation energies is rationalized to evaluate theoretical exciton binding energies. This property is shown to be useful for discriminating the charge donation ability of molecular and supermolecular systems. Multielectronic 3D maps of exciton formal charges are showcased, demonstrating the applicability of these approximate wave functions for modeling properties of large molecules and clusters at nanoscales. This modeling proves useful in designing molecular photovoltaic devices. Our methodology holds potential applications in systematic evaluations of such systems and the development of fundamental artificial intelligence databases for predicting related properties.

2.
Chempluschem ; : e202400404, 2024 Sep 05.
Artigo em Inglês | MEDLINE | ID: mdl-39235155

RESUMO

The aggregation of ß-amyloid peptide (Aß) is associated with neurodegenerative diseases such as Alzheimer's disease (AD). Several therapies aimed at reducing the aggregation of this peptide have emerged as potential strategies for the treatment of AD. This paper describes the design and preparation of new hybrid molecules based on steroids, selenosugars, and [60]fullerene as potential inhibitors of Aß oligomerization. These moieties were selected based on their antioxidant properties and possible areas of interaction with the Aß. Cyclopropanations between C60 and malonates bearing different steroid and selenosugar moieties using the Bingel-Hirsch protocol have enabled the synthesis of functionalized molecular hybrids. The obtained derivatives were characterized by physical and spectroscopic techniques. Theoretical calculations for all the selenium compounds were performed using the density functional theory DFT/B3LYP-D3(BJ)/6-311G(2d,p) predicting the most stable conformations of the synthesized derivatives. Relevant geometrical parameters were investigated to relate the stereochemical behavior and the spectroscopic data obtained. The affinity of the compounds for Aß-peptide was estimated by molecular docking simulation, which predicted an increase in affinity and interactions for Aß for the hybrids containing the C60 core. In addition, parameters such as lipophilicity, polar surface area, and dipole moment were calculated to predict their potential interaction with membrane cells.

3.
Phys Chem Chem Phys ; 12(2): 442-52, 2010 Jan 14.
Artigo em Inglês | MEDLINE | ID: mdl-20023822

RESUMO

O(2) adsorption in proton, sodium and copper exchanged chabazite has been studied using periodic and cluster approaches by means of density functional theory. The Grimme's correction has been used to include the dispersion contribution to B3LYP. Two cation locations have been considered: one with the cation at the six-membered ring (MCHA(I)) and the other with the cation at the 8-membered ring (MCHA(IV)). The O(2)-HCHA and O(2)-NaCHA adsorption complexes present a eta(1)-O(2) bent coordination. The adsorption energies, which are due to dispersion, are between -15 and -19 kJ mol(-1), in agreement with the experimental values. On the other hand, the O(2) coordination to CuCHA is through a eta(2)-side-on mode with a square planar coordination around the metal center. This structure favors the Cu d -->pi* O(2) charge transfer which becomes the predominant stabilizing factor. The adsorption of singlet states of O(2) in HCHA and NaCHA, modeled with an ONIOM M12T:48T, is of the same nature as that of the ground state, and only the highest in energy (1)Sigma is significantly more stabilized in MCHA than the triplet state by 14 to 24 kJ mol(-1). The adsorption of singlet O(2) in Cu exchanged zeolites presents a higher electron transfer from Cu(+) to O(2) than that calculated for the triplet species and thus both singlet states are stabilized with respect to the ground state O(2). Generally, singlet oxygen appears more attractive to active zeolite models than those calculated with triplet oxygen, indicating a source of oxidative efficiency for designed structures.

4.
J Mol Graph Model ; 28(8): 746-54, 2010 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-20189855

RESUMO

The behavior of O(2) molecule in models of acid aluminosilicate sites on any kind of material was investigated using reliable QM ab initio calculations. The triplet-singlet energy gap of isolated O(2) was calculated at confident levels of theory with different basis sets as a reference. Models of aluminosilicate active sites interacting with oxygen in their singlet and triplet electronic states were considered for two kinds of O(2) arrangements. Geometry optimizations were performed on both non-corrected and corrected BSSE potential energy surfaces, realizing that good modeling of heavy atom-hydrogen interactions is sensitive to BSSE corrections during these processes. Energies were further evaluated at higher level of theory to test tendencies. Singlet oxygen appears more attractive to active aluminosilicate sites than those calculated with triplet oxygen, indicating a source of oxidative efficiency for designed nanostructures containing such molecular residues. It was clearly seen that aluminosilicate groups, appearing ubiquitously in several materials, could reduce the O(2) triplet-singlets energy gap by at least 10 kJ/mol. Some elegant features of oxygen interactions with such sites were further analyzed by means of the atoms in molecules (AIM) theory.


Assuntos
Silicatos de Alumínio/química , Modelos Químicos , Oxigênio/química , Simulação por Computador , Teoria Quântica , Eletricidade Estática
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