Community Structure of Active Aerobic Methanotrophs in Red Mangrove (Kandelia obovata) Soils Under Different Frequency of Tides.

Methanotrophs are important microbial communities in coastal ecosystems. They reduce CH4 emission in situ, which is influenced by soil conditions. This study aimed to understand the differences in active aerobic methanotrophic communities in mangrove forest soils experiencing different inundation frequency, i.e., in soils from tidal mangroves, distributed at lower elevations, and from dwarf mangroves, distributed at higher elevations. Labeling of pmoA gene of active methanotrophs using DNA-based stable isotope probing (DNA-SIP) revealed that methanotrophic activity was higher in the dwarf mangrove soils than in the tidal mangrove soils, possibly because of the more aerobic soil conditions. Methanotrophs affiliated with the cluster deep-sea-5 belonging to type Ib methanotrophs were the most dominant methanotrophs in the fresh mangrove soils, whereas type II methanotrophs also appeared in the fresh dwarf mangrove soils. Furthermore, Methylobacter and Methylosarcina were the most important active methanotrophs in the dwarf mangrove soils, whereas Methylomonas and Methylosarcina were more active in the tidal mangrove soils. High-throughput sequencing of the 16S ribosomal RNA (rRNA) gene also confirmed similar differences in methanotrophic communities at the different locations. However, several unclassified methanotrophic bacteria were found by 16S rRNA MiSeq sequencing in both fresh and incubated mangrove soils, implying that methanotrophic communities in mangrove forests may significantly differ from the methanotrophic communities documented in previous studies. Overall, this study showed the feasibility of 13CH4 DNA-SIP to study the active methanotrophic communities in mangrove forest soils and revealed differences in the methanotrophic community structure between coastal mangrove forests experiencing different tide frequencies.

Effects of Soil Type and Thermal Boundary on Predicting Temperature Profiles and Groundwater Fluxes.

In the last few years, several articles have studied heat as a groundwater tracer and developed analytical geothermal solutions to predict the subsurface temperature and groundwater fluxes. These solutions can be sorted into steady-state and transient solutions. The steady-state solutions cannot describe the time-varying subsurface temperature, while the transient solutions ignore subsurface thermal boundary effects. Moreover, soil type may be another crucial factor significantly affecting the prediction results. This study compares six existing classical analytical solutions to examine the effects of soil types and subsurface thermal boundaries on simulating temperature-depth profiles and estimating groundwater fluxes. Several synthetic cases are built by considering the common soil types, sand and clay, to demonstrate their effects on predicting the profiles. A field case is used to show the effect of subsurface thermal boundaries on the groundwater flux estimated by an inverse approach. The study results indicate that the soil types have significant influences on simulating the profiles, and the influences grow with time. Some existing solutions may give inaccurate estimations of the field groundwater flux since they merely consider the heat source from the temperature variations on the ground surface but ignore possible thermal boundary effects in the subsurface. These findings will be valuable to those applying heat as a tracer to investigate infiltration.

Microbial community development in tropical constructed wetland soils in Taiwan.

Constructed wetlands are widely used around the world as a low-cost wastewater treatment system that simultaneously provides various ecosystem services. Microorganisms in wetland soils serve as fundamental producers and decomposers that support wetland functions. However, few studies have documented the compositions of soil microorganisms in constructed wetland systems and even fewer have evaluated how soil microorganisms change after a wetland is constructed. In this study, soil samples were collected from four constructed wetlands of different ages and analyzed with a phospholipid fatty acid (PLFA) method to show how soil microbial communities change overtime. The results were that both the bacterial and fungal abundances increased with wetland age, and bacteria comprised about 90% of the soil microbial communities in all ages of constructed wetlands. Although the compositions of microbial communities remained similar among the wetlands, the stress indices showed that microbial stress may be affected by changes in the availability of in situ nutrients, e.g. ammonium, nitrate, soluble organic nitrogen and total dissolved nitrogen.

Compositions of sequestrated soil carbon in constructed wetlands of Taiwan.

Constructed wetlands are an ecological engineering technology that has been widely applied to treat anthropogenic wastewater. Until now, few studies have focused on soil carbon (C) in the constructed treatment wetlands in tropical regions. Therefore, this study provides insight into the changes in soil C composition of tropically constructed wetlands at different ages. Five constructed wetlands were investigated in northern Kaohsiung, Taiwan. Soil C was analyzed at three different depths using an acid-hydrolysable method. The results showed that soil TOC content was highest on the soil surface (0-2 cm) and decreased at greater soil depths (2-5 and 5-10 cm) in all the studied constructed wetlands. There was more soil acid-hydrolysable C in the older constructed wetlands than in the younger ones at all depths. On the contrary, the soil recalcitrant carbon (RP-C) did not vary much across the wetland soils. In addition, the RP-C to TOC ratios were higher in the younger than older constructed wetlands, implying that the soil bioavailable C sources for microbial growth increased with the wetland's age. As a result, the compositions of organotrophic microbes, such as methanogens (mcrA copies), appeared to increase with wetlands' ages (i.e., negatively correlated with RP-C/TOC), while the total microbial abundance (16S rDNA) and abundance of lithotrophic microbes, such as methanotrophs (pmoA copies), were not correlated with RP-C/TOC or AHPI-C/TOC ratios, based on the results of our canonical correspondence analysis. Furthermore, the constructed wetlands accumulated soil RP-C from 2.33 to 0.08 g C m-2 day-1 in the constructed wetlands 1 to 30 years old, respectively.

Niche Differentiation of Active Methane-Oxidizing Bacteria in Estuarine Mangrove Forest Soils in Taiwan.

Mangrove forests are one of the important ecosystems in tropical coasts because of their high primary production, which they sustain by sequestering a substantial amount of CO2 into plant biomass. These forests often experience various levels of inundation and play an important role in CH4 emissions, but the taxonomy of methanotrophs in these systems remains poorly understood. In this study, DNA-based stable isotope probing showed significant niche differentiation in active aerobic methanotrophs in response to niche differentiation in upstream and downstream mangrove soils of the Tamsui estuary in northwestern Taiwan, in which salinity levels differ between winter and summer. Methylobacter and Methylomicrobium-like Type I methanotrophs dominated methane-oxidizing communities in the field conditions and were significantly 13C-labeled in both upstream and downstream sites, while Methylobacter were well adapted to high salinity and low temperature. The Type II methanotroph Methylocystis comprised only 10-15% of all the methane oxidizers in the upstream site but less than 5% at the downstream site under field conditions. 13C-DNA levels in Methylocystis were significantly lower than those in Type I methanotrophs, while phylogenetic analysis further revealed the presence of novel methane oxidizers that are phylogenetically distantly related to Type Ia in fresh and incubated soils at a downstream site. These results suggest that Type I methanotrophs display niche differentiation associated with environmental differences between upstream and downstream mangrove soils.

Improvement in the biochemical and chemical properties of badland soils by thorny bamboo.

Badland soils-which have high silt and clay contents, bulk density, and soil electric conductivity- cover a large area of Southern Taiwan. This study evaluated the amelioration of these poor soils by thorny bamboo, one of the few plant species that grows in badland soils. Soil physiochemical and biological parameters were measured from three thorny bamboo plantations and nearby bare lands. Results show that bamboo increased microbial C and N, soil acid-hydrolysable C, recalcitrant C, and soluble organic C of badland soils. High microbial biomass C to total organic C ratio indicates that soil organic matter was used more efficiently by microbes colonizing bamboo plantations than in bare land soils. High microbial respiration to biomass C ratio in bare land soils confirmed environmentally induced stress. Soil microbes in bare land soils also faced soil organic matter with the high ratio of recalcitrant C to total organic C. The high soil acid-hydrolysable C to total organic C ratio at bamboo plantations supported the hypothesis that decomposition of bamboo litter increased soil C in labile fractions. Overall, thorny bamboo improved soil quality, thus, this study demonstrates that planting thorny bamboo is a successful practice for the amelioration of badland soils.

13C NMR spectroscopy characterization of particle-size fractionated soil organic carbon in subalpine forest and grassland ecosystems.

BACKGROUND: Soil organic carbon (SOC) and carbon (C) functional groups in different particle-size fractions are important indicators of microbial activity and soil decomposition stages under wildfire disturbances. This research investigated a natural Tsuga forest and a nearby fire-induced grassland along a sampling transect in Central Taiwan with the aim to better understand the effect of forest wildfires on the change of SOC in different soil particle scales. Soil samples were separated into six particle sizes and SOC was characterized by solid-state 13C nuclear magnetic resonance spectroscopy in each fraction. RESULTS: The SOC content was higher in forest than grassland soil in the particle-size fraction samples. The O-alkyl-C content (carbohydrate-derived structures) was higher in the grassland than the forest soils, but the alkyl-C content (recalcitrant substances) was higher in forest than grassland soils, for a higher humification degree (alkyl-C/O-alkyl-C ratio) in forest soils for all the soil particle-size fractions. CONCLUSIONS: High humification degree was found in forest soils. The similar aromaticity between forest and grassland soils might be attributed to the fire-induced aromatic-C content in the grassland that offsets the original difference between the forest and grassland. High alkyl-C content and humification degree and low C/N ratios in the fine particle-size fractions implied that undecomposed recalcitrant substances tended to accumulate in the fine fractions of soils.