Microbial communities along biogeochemical gradients in a hydrocarbon-contaminated aquifer.

Micro-organisms are known to degrade a wide range of toxic substances. How the environment shapes microbial communities in polluted ecosystems and thus influences degradation capabilities is not yet fully understood. In this study, we investigated microbial communities in a highly complex environment: the capillary fringe and subjacent sediments in a hydrocarbon-contaminated aquifer. Sixty sediment sections were analysed using terminal restriction fragment length polymorphism (T-RFLP) fingerprinting, cloning and sequencing of bacterial and archaeal 16S rRNA genes, complemented by chemical analyses of petroleum hydrocarbons, methane, oxygen and alternative terminal electron acceptors. Multivariate statistics revealed concentrations of contaminants and the position of the water table as significant factors shaping the microbial community composition. Micro-organisms with highest T-RFLP abundances were related to sulphate reducers belonging to the genus Desulfosporosinus, fermenting bacteria of the genera Sedimentibacter and Smithella, and aerobic hydrocarbon degraders of the genus Acidovorax. Furthermore, the acetoclastic methanogens Methanosaeta, and hydrogenotrophic methanogens Methanocella and Methanoregula were detected. Whereas sulphate and sulphate reducers prevail at the contamination source, the detection of methane, fermenting bacteria and methanogenic archaea further downstream points towards syntrophic hydrocarbon degradation.

15N tracing model SimKIM to analyse the NO and N2O production during autotrophic, heterotrophic nitrification, and denitrification in soils.

An adjusted model was developed to analyse measured data of nitrous oxide and nitric oxide fluxes from an arable black earth soil. The existing models for kinetic isotope studies ignore N-trace gas fluxes. The novel model includes both N-gas production by heterotrophic and autotrophic nitrification and N-gas production and consumption by denitrification. Nitrous oxide and nitric oxide production through nitrification was simulated following the 'hole-in-the-pipe' model (4: M.K. Firestone et al. Microbiological basis of NO and N2O production and consumption in soil), N-gas production by denitrification was described with first-order kinetics. The model has been evaluated in a triplicate laboratory experiment, which involved three treatments (glycine, , or -pool labeled) to distinguish the different sources of N2O and NO. Heterotrophic nitrification was negligible, whereas autotrophic nitrification and denitrification occur simultaneously in soils. Nitrification was the main source of NO and N2O in the black earth soil by field capacity (water content: 0.22 g H2O g(-1) soil). The NO release was higher than the N2O release, the N2O/NO ratio was 0.05 in this soil.