Detalhe da pesquisa
1.
Psychedelics reopen the social reward learning critical period.
Nature
; 618(7966): 790-798, 2023 Jun.
Artigo
em Inglês
| MEDLINE | ID: mdl-37316665
2.
Two-stage linked component analysis for joint decomposition of multiple biologically related data sets.
Biostatistics
; 23(4): 1200-1217, 2022 10 14.
Artigo
em Inglês
| MEDLINE | ID: mdl-35358296
3.
Comprehensive analysis of a mouse model of spontaneous uveoretinitis using single-cell RNA sequencing.
Proc Natl Acad Sci U S A
; 116(52): 26734-26744, 2019 Dec 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-31843893
4.
Hypoxia tolerance in the Norrin-deficient retina and the chronically hypoxic brain studied at single-cell resolution.
Proc Natl Acad Sci U S A
; 116(18): 9103-9114, 2019 04 30.
Artigo
em Inglês
| MEDLINE | ID: mdl-30988181
5.
Enter the Matrix: Factorization Uncovers Knowledge from Omics.
Trends Genet
; 34(10): 790-805, 2018 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-30143323
6.
projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.
Bioinformatics
; 36(11): 3592-3593, 2020 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-32167521
7.
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer.
Bioinformatics
; 34(11): 1859-1867, 2018 06 01.
Artigo
em Inglês
| MEDLINE | ID: mdl-29342249
8.
CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression data in cancer.
PLoS Comput Biol
; 14(4): e1006935, 2018 06.
Artigo
em Inglês
| MEDLINE | ID: mdl-31002670
9.
PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.
Bioinformatics
; 33(12): 1892-1894, 2017 Jun 15.
Artigo
em Inglês
| MEDLINE | ID: mdl-28174896
10.
in silico transcriptome dissection of neocortical excitatory neurogenesis via joint matrix decomposition and transfer learning.
bioRxiv
; 2024 Feb 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-38464021
11.
Transfer Learning Reveals Cancer-Associated Fibroblasts Are Associated with Epithelial-Mesenchymal Transition and Inflammation in Cancer Cells in Pancreatic Ductal Adenocarcinoma.
Cancer Res
; 84(9): 1517-1533, 2024 May 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-38587552
12.
Transcriptomic forecasting with neural ordinary differential equations.
Patterns (N Y)
; 4(8): 100793, 2023 Aug 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37602211
13.
Pumping the brakes on RNA velocity by understanding and interpreting RNA velocity estimates.
Genome Biol
; 24(1): 246, 2023 10 26.
Artigo
em Inglês
| MEDLINE | ID: mdl-37885016
14.
Converging on a Cure: The Roads to Predictive Immunotherapy.
Cancer Discov
; 13(5): 1053-1057, 2023 05 04.
Artigo
em Inglês
| MEDLINE | ID: mdl-37067199
15.
Transcriptional Control of Neocortical Size and Microcephaly.
bioRxiv
; 2023 Nov 02.
Artigo
em Inglês
| MEDLINE | ID: mdl-37961182
16.
Transcriptional Signatures of Hippocampal Tau Pathology in Primary Age-Related Tauopathy and Alzheimer's Disease.
medRxiv
; 2023 Sep 12.
Artigo
em Inglês
| MEDLINE | ID: mdl-37745408
17.
Morphology-guided transcriptomic analysis of human pancreatic cancer organoids reveals microenvironmental signals that enhance invasion.
J Clin Invest
; 133(8)2023 04 17.
Artigo
em Inglês
| MEDLINE | ID: mdl-36881486
18.
Inferring cellular and molecular processes in single-cell data with non-negative matrix factorization using Python, R and GenePattern Notebook implementations of CoGAPS.
Nat Protoc
; 18(12): 3690-3731, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37989764
19.
Uncovering the spatial landscape of molecular interactions within the tumor microenvironment through latent spaces.
Cell Syst
; 14(4): 285-301.e4, 2023 04 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-37080163
20.
Digitize your Biology! Modeling multicellular systems through interpretable cell behavior.
bioRxiv
; 2023 Nov 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37745323