PETRA IV: the ultralow-emittance source project at DESY.

The PETRA IV project aims at upgrading the present synchrotron radiation source PETRA III at DESY into an ultralow-emittance source. Being diffraction limited up to X-rays of about 10 keV, PETRA IV will be ideal for three-dimensional X-ray microscopy of biological, chemical and physical processes under realistic conditions at length scales from atomic dimensions to millimetres and time scales down to the sub-nanosecond regime. In this way, it will enable groundbreaking studies in many fields of science and industry, such as health, energy, earth and environment, mobility and information technology. The science case is reviewed and the current state of the conceptual design is summarized, discussing a reference lattice, a hybrid multi-bend achromat with an interleaved sextupole configuration based on the ESRF-EBS design, in more detail as well as alternative lattice concepts.

The synchrotron radiation source PETRA III and its future ultra-low-emittance upgrade PETRA IV.

PETRA III at DESY is one of the brightest synchrotron radiation sources worldwide. It serves a broad international multidisciplinary user community from academia to industry at currently 25 specialised beamlines. With a storage-ring energy of 6 GeV, it provides mainly hard to high-energy X-rays for versatile experiments in a very broad range of scientific fields. It is ideally suited for an upgrade to the ultra-low emittance source PETRA IV, owing to its large circumference of 2304 m. With a targeted storage ring emittance of 20 × 5 pm 2 rad 2 , PETRA IV will reach spectral brightnesses two to three orders of magnitude higher than today. The unique beam parameters will make PETRA IV the ultimate in situ 3D microscope for biological, chemical, and physical processes helping to address key questions in health, energy, mobility, information technology, and earth and environment.

Crystal structure of small protein crambin at 0.48†Šresolution.

With the development of highly brilliant and extremely intense synchrotron X-ray sources, extreme high-resolution limits for biological samples are now becoming attainable. Here, a study is presented that sets the record in crystallographic resolution for a biological macromolecule. The structure of the small protein crambin was determined to 0.48 Šresolution on the PETRA II ring before its conversion to a dedicated synchrotron-radiation source. The results reveal a wealth of details in electron density and demonstrate the possibilities that are potentially offered by a high-energy source. The question now arises as to what the true limits are in terms of what can be seen at such high resolution. From what can be extrapolated from the results using crystals of crambin, this limit would be at approximately 0.40 Å, which approaches that for smaller compounds.

Digital in-line holography with femtosecond VUV radiation provided by the free-electron laser FLASH.

Femtosecond vacuum ultraviolet (VUV) radiation provided by the free-electron laser FLASH was used for digital in-line holographic microscopy and applied to image particles, diatoms and critical point dried fibroblast cells. To realize the classical in-line Gabor geometry, a 1 microm pinhole was used as spatial filter to generate a divergent light cone with excellent pointing stability. At a fundamental wavelength of 8 nm test objects such as particles and diatoms were imaged at a spatial resolution of 620 nm. In order to demonstrate the applicability to biologically relevant systems, critical point dried rat embryonic fibroblast cells were for the first time imaged with free-electron laser radiation.

Three-beam diffraction in an elastically strained crystal plate.

Based on the Takagi-Taupin equations, an analytical expression for the three-beam diffraction profile function in an elastically strained crystal plate is derived. The strain parameters appear in the shape functions governing both triplet-phase dependent and independent terms in the solution. Simulations show that three-beam profiles are significantly influenced. With increasing strain any phase information in the profiles is obscured and subsequently lost.

Three-beam resonant X-ray diffraction in germanium - Laue transmission cases.

Perturbation of the two-beam diffracted power owing to the influence of a third lattice node has been examined for various three-beam cases in a small finite germanium crystal in the vicinity of the K-absorption edge. Although the crystal was slightly imperfect, the main parts of the experimental results are very well described within the framework of the fundamental theory of X-ray diffraction in conjunction with Cromer-Liberman calculations for the resonant scattering terms. Beam divergence and dynamical block size are treated as adjustable parameters in the analysis. Observed changes in the three-beam profile asymmetry are mainly attributed to size and not to resonance effects associated with the triplet phase sum of the involved reflections. Close to the absorption edge there is however some evidence indicating that f' values should be reduced in magnitude compared to the tabulated ones.

The potential of future light sources to explore the structure and function of matter.

Structural studies in general, and crystallography in particular, have benefited and still do benefit dramatically from the use of synchrotron radiation. Low-emittance storage rings of the third generation provide focused beams down to the micrometre range that are sufficiently intense for the investigation of weakly scattering crystals down to the size of several micrometres. Even though the coherent fraction of these sources is below 1%, a number of new imaging techniques have been developed to exploit the partially coherent radiation. However, many techniques in nanoscience are limited by this rather small coherent fraction. On the one hand, this restriction limits the ability to study the structure and dynamics of non-crystalline materials by methods that depend on the coherence properties of the beam, like coherent diffractive imaging and X-ray correlation spectroscopy. On the other hand, the flux in an ultra-small diffraction-limited focus is limited as well for the same reason. Meanwhile, new storage rings with more advanced lattice designs are under construction or under consideration, which will have significantly smaller emittances. These sources are targeted towards the diffraction limit in the X-ray regime and will provide roughly one to two orders of magnitude higher spectral brightness and coherence. They will be especially suited to experiments exploiting the coherence properties of the beams and to ultra-small focal spot sizes in the regime of several nanometres. Although the length of individual X-ray pulses at a storage-ring source is of the order of 100 ps, which is sufficiently short to track structural changes of larger groups, faster processes as they occur during vision or photosynthesis, for example, are not accessible in all details under these conditions. Linear accelerator (linac) driven free-electron laser (FEL) sources with extremely short and intense pulses of very high coherence circumvent some of the limitations of present-day storage-ring sources. It has been demonstrated that their individual pulses are short enough to outrun radiation damage for single-pulse exposures. These ultra-short pulses also enable time-resolved studies 1000 times faster than at standard storage-ring sources. Developments are ongoing at various places for a totally new type of X-ray source combining a linac with a storage ring. These energy-recovery linacs promise to provide pulses almost as short as a FEL, with brilliances and multi-user capabilities comparable with a diffraction-limited storage ring. Altogether, these new X-ray source developments will provide smaller and more intense X-ray beams with a considerably higher coherent fraction, enabling a broad spectrum of new techniques for studying the structure of crystalline and non-crystalline states of matter at atomic length scales. In addition, the short X-ray pulses of FELs will enable the study of fast atomic dynamics and non-equilibrium states of matter.

Al22 Br20 ⋠12 THF: The First Polyhedral Aluminum Subhalide-A Step on the Path to a New Modification of Aluminum?

The first polyhedral aluminum subhalide Al22 Br20 ⋅20 L forms in the disproportionation of aluminum(I) bromide solutions. The cluster is built up from an Al12 icosahedron with ten exohedrally bound (formally divalent) Al atoms (see structure). Such a homoatomic framework is unknown for molecular compounds. Even for the element boron this framework is only found as a section from the ß-rhombohedral element modification.

Bicyclic glutamic acid derivatives.

For the second-generation asymmetric synthesis of the trans-tris(homoglutamic) acids via Strecker reaction of chiral ketimines, the cyanide addition as the key stereodifferentiating step produces mixtures of diastereomeric alpha-amino nitrile esters the composition of which is independent of the reaction temperature and the type of the solvent, respectively. The subsequent hydrolysis is exclusively achieved with concentrated H(2)SO(4) yielding diastereomeric mixtures of three secondary alpha-amino alpha-carbamoyl-gamma-esters and two diastereomeric cis-fused angular alpha-carbamoyl gamma-lactams as bicyclic glutamic acid derivatives, gained from in situ stereomer differentiating cyclisation of the secondary cis-alpha-amino alpha-carbamoyl-gamma-esters. Separation was achieved by CC. The pure secondary trans-alpha-amino alpha-carbamoyl-gamma-esters cyclise on heating and treatment with concentrated H(2)SO(4), respectively, to diastereomeric cis-fused angular secondary alpha-amino imides. Their hydrogenolysis led to the enantiomeric cis-fused angular primary alpha-amino imides. The configuration of all compounds was completely established by NMR methods, CD-spectra, and by X-ray analyses of the (alphaR,1R,5R)-1-carbamoyl-2-(1-phenylethyl)-2-azabicyclo[3.3.0]octan-3-one and of the trans-alphaS,1S,2R-2-ethoxycarbonylmethyl-1-(1-phenylethylamino)cyclopentanecarboxamide.

Optical rotation of achiral pentaerythritol.

The optical rotatory power of achiral crystals of achiral pentaerythritol molecules was measured. The maximum rotations were found to be +/-6 degrees /mm. The quantum mechanically computed rotation of pentaerythritol molecules using linear response theory was 6 times larger although the experimental and theoretical tensors were similarly oriented to within 5 degrees .

Low-resolution ab initio phasing of Sarcocystis muris lectin SML-2.

Structural analysis of the lectin SML-2 faced difficulties when applying standard crystallographic phasing methods. The connectivity-based ab initio phasing method allowed the computation of a 16 A resolution Fourier synthesis and the derivation of primary structural information. It was found that SML-2 crystals have three dimers in the asymmetric part of the unit cell linked by a noncrystallographic symmetry close to translation by (0, 0, 1/3). A clear identification of the noncrystallographic twofold axis explains the space-group transformation from the primitive P2(1)2(1)2(1) to the C-centred C222(1) observed during annealing procedures within an N(2) cryostream for cocrystals of SML-2 and galactose. Related packing considerations predict a possible arrangement of SML-2 molecules in a tetragonal unit cell. Multiple noncrystallographic symmetries and crystal forms provide a basis for further image improvements.

Accurate rocking-curve measurements on protein crystals grown in a homogeneous magnetic field of 2.4 T.

Differences in mosaicity between lysozyme crystals grown inside and outside a homogeneous magnetic field of 2.4 T and with and without agarose gel were investigated by X-ray diffraction rocking-curve measurements. High angular resolution was achieved using an Si(113) four-reflection Bartels monochromator. The results show that (i) all crystals were highly perfect, (ii) the mosaicities were clearly anisotropic and (iii) the mosaicities varied more strongly within each group of crystals (grown under identical conditions) than the average values across groups. In particular, the effect of the magnetic field on crystal mosaicity was found to be very small. Finally, the spatial distribution of mosaic blocks inside a protein crystal was visualized with a novel diffraction technique using a high spatial resolution two-dimensional CCD detector.

Two metalloid Ga22 clusters containing a novel Ga22 core with an icosahedral Ga12 center.

In addition to the two so far known types of metalloid Ga(22) clusters a new type is presented in two compounds containing the anions [Ga(22)Br[N(SiMe(3))(2)](10)Br(10)](3-) (1) and [Ga(22)Br(2)[N(SiMe(3))(2)](10)Br(10)](2-) (2). In both anions 10 Ga atoms of the icosahedral Ga(12) core are directly connected to further Ga atoms. The two remaining Ga atoms (top and bottom) of the Ga(12) icosahedron are bonded to one (1) and two Br atoms (2), respectively. The formation and structure of both compounds containing a slightly different average oxidation number of the Ga atoms is discussed and compared especially with regard to the Ga(84) cluster compound and similar metalloid Al(n) clusters. Finally, the consequences arising from the presence of two very similar but not identical Ga(22) cluster compounds are discussed and special consideration is given to the so far not understood physical properties (metallic conductivity and superconductivity) of the Ga(84) cluster compound.

Investigation of radiation-dose-induced changes in organic light-atom crystals by accurate d-spacing measurements.

Changes in d-spacing have been measured for organic compounds as a function of temperature, wavelength and primary beam intensity using intense synchrotron radiation. The d-spacings of organic and protein crystals were found to increase irreversibly as a function of radiation dose. The activation energy of this thermally activated process was estimated. No evidence for a significant temperature increase of the sample due to exposure to intense X-ray beams could be found experimentally for flux densities up to 4 x 10(12) photons s-1 mm-2.

Preparation and precise structural determination of a second Ga84 cluster compound. A first hint for cluster doping and its fundamental consequences in the field of chemistry and physics of nanoscaled metalloid cluster material.

The Ga(84)R(20)(4-) [R = N(SiMe(3))(2)] species, which represents the largest metalloid cluster entity structurally characterized so far, has been electronically and topologically modified: Via changing the redox potential of the reaction solution, crystals different from those containing the Ga(84)R(20)(4-) anion can be isolated, featuring similar Ga(84)R(20)(3-) entities. An accurate crystal structure analysis via synchrotron radiation is presented, which might be the first step toward an understanding of the metallic conductivity and superconductivity of the Ga(84)R(20)(4-) cluster compound, physical properties which are singular in the field of metalloid clusters so far.

Three-beam interference is a sensitive measure of the efficacy of macromolecular refinement techniques.

Triplet phases recorded from insulin crystals were used to measure the improvement of phases during model refinement and to quantify the contribution made by each step in the refinement. Conventional amplitude data were recorded to 1.5 A resolution from rhombohedral pig insulin crystals using 1.54 A Cu Kalpha radiation. An initial atomic model and starting phases were obtained from a published structure and the atomic model was refined against the amplitude data using CNS. The refined phases were compared with 800 triplet phases that were measured from similar crystals using a three-beam interference technique and 1.1 A wavelength synchrotron radiation. The solvent region was improved further using a novel density-modification procedure. Calculated triplet phases were obtained from the model after each step in the refinement and were compared with the recorded triplet phases. The average difference between the recorded triplet phases and the calculated triplet phases was used as an unbiased measure of the correctness of the model at each stage in the refinement. The average individual phase error was estimated from discrepancies from triplet phases after each refinement step. Conventional atomic refinement of an approximate starting model reduced the average individual phase error from 21.6 to 14.7 degrees. Improvement of the solvent region, including the difference-map flattening procedure, reduced the individual phase error by a further 2.6 degrees. Modeling the discrete disorder of four amino acids accounted for an additional 0.5 degrees improvement and the final individual phase error was 11.6 degrees.